Package evaluation to test BioMakie on Julia 1.14.0-DEV.65 (b05afe0f25*) started at 2025-11-12T07:45:16.488 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.52s ################################################################################ # Installation # Installing BioMakie... Resolving package versions... Installed libaom_jll ────────────────── v3.13.1+0 Installed libass_jll ────────────────── v0.17.4+0 Installed Libuuid_jll ───────────────── v2.41.2+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed ImageIO ───────────────────── v0.6.9 Installed CommonWorldInvalidations ──── v1.0.0 Installed MosaicViews ───────────────── v0.3.4 Installed PolygonOps ────────────────── v0.1.2 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed Xorg_libXinerama_jll ──────── v1.1.6+0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed Extents ───────────────────── v0.1.6 Installed OrderedCollections ────────── v1.8.1 Installed NearestNeighbors ──────────── v0.4.22 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed TensorCast ────────────────── v0.4.9 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed TransmuteDims ─────────────── v0.1.17 Installed Colorfy ───────────────────── v1.1.2 Installed ChainRules ────────────────── v1.72.6 Installed FileIO ────────────────────── v1.17.1 Installed Giflib_jll ────────────────── v5.2.3+0 Installed Distances ─────────────────── v0.10.12 Installed StaticArrayInterface ──────── v1.8.0 Installed NaNMath ───────────────────── v1.1.3 Installed QuadGK ────────────────────── v2.11.2 Installed libinchi_jll ──────────────── v1.6.0+0 Installed PairwiseListMatrices ──────── v0.11.1 Installed Graphics ──────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Opus_jll ──────────────────── v1.5.2+0 Installed AdaptivePredicates ────────── v1.2.0 Installed PackageExtensionCompat ────── v1.0.2 Installed ScopedValues ──────────────── v1.5.0 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed WoodburyMatrices ──────────── v1.0.0 Installed Tables ────────────────────── v1.12.1 Installed Ogg_jll ───────────────────── v1.3.6+0 Installed EnumX ─────────────────────── v1.0.5 Installed Reexport ──────────────────── v1.2.2 Installed LZO_jll ───────────────────── v2.10.3+0 Installed Hyperscript ───────────────── v0.0.5 Installed InverseFunctions ──────────── v0.1.17 Installed Preferences ───────────────── v1.5.0 Installed BioAlignments ─────────────── v3.1.0 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Missings ──────────────────── v1.2.0 Installed Static ────────────────────── v1.3.1 Installed TableTraits ───────────────── v1.0.1 Installed Imath_jll ─────────────────── v3.1.11+0 Installed GLMakie ───────────────────── v0.11.11 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed SortingAlgorithms ─────────── v1.2.2 Installed LaTeXStrings ──────────────── v1.4.0 Installed MappedArrays ──────────────── v0.4.2 Installed RangeArrays ───────────────── v0.3.2 Installed Grisu ─────────────────────── v1.0.2 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed Format ────────────────────── v1.3.7 Installed CRlibm ────────────────────── v1.0.2 Installed Inflate ───────────────────── v0.1.5 Installed MacroTools ────────────────── v0.5.16 Installed Indexing ──────────────────── v1.1.1 Installed ColorBrewer ───────────────── v0.4.2 Installed DataStructures ────────────── v0.18.22 Installed URIs ──────────────────────── v1.6.1 Installed DiffResults ───────────────── v1.1.0 Installed Quaternions ───────────────── v0.7.6 Installed StridedViews ──────────────── v0.4.1 Installed AbstractTrees ─────────────── v0.4.5 Installed Packing ───────────────────── v0.5.1 Installed FillArrays ────────────────── v1.15.0 Installed LazyModules ───────────────── v0.3.1 Installed OpenEXR_jll ───────────────── v3.2.4+0 Installed MakieCore ─────────────────── v0.9.5 Installed oneTBB_jll ────────────────── v2022.0.0+1 Installed DelimitedFiles ────────────── v1.9.1 Installed ArnoldiMethod ─────────────── v0.4.0 Installed Cairo ─────────────────────── v1.1.1 Installed StatsBase ─────────────────── v0.34.8 Installed UnicodeFun ────────────────── v0.4.1 Installed x264_jll ──────────────────── v10164.0.1+0 Installed CodecZlib ─────────────────── v0.7.8 Installed Observables ───────────────── v0.5.5 Installed Zygote ────────────────────── v0.7.10 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed DataValueInterfaces ───────── v1.0.0 Installed CEnum ─────────────────────── v0.5.0 Installed ArrayInterface ────────────── v7.22.0 Installed CommonSubexpressions ──────── v0.3.1 Installed Libffi_jll ────────────────── v3.4.7+0 Installed TransformsBase ────────────── v1.6.0 Installed LoggingExtras ─────────────── v1.2.0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed RealDot ───────────────────── v0.1.0 Installed IrrationalConstants ───────── v0.2.6 Installed MathTeXEngine ─────────────── v0.6.7 Installed libdecor_jll ──────────────── v0.2.2+0 Installed GPUArraysCore ─────────────── v0.2.0 Installed coordgenlibs_jll ──────────── v3.0.2+0 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed libpng_jll ────────────────── v1.6.50+0 Installed Contour ───────────────────── v0.6.3 Installed isoband_jll ───────────────── v0.2.3+0 Installed SimpleTraits ──────────────── v0.9.5 Installed ColorVectorSpace ──────────── v0.11.0 Installed DataValues ────────────────── v0.4.13 Installed ImageMetadata ─────────────── v0.9.10 Installed RoundingEmulator ──────────── v0.2.1 Installed HTTP ──────────────────────── v1.10.19 Installed StableRNGs ────────────────── v1.0.4 Installed ImageShow ─────────────────── v0.3.8 Installed Interpolations ────────────── v0.15.1 Installed BitFlags ──────────────────── v0.1.9 Installed libfdk_aac_jll ────────────── v2.0.4+0 Installed libsixel_jll ──────────────── v1.10.5+0 Installed libwebp_jll ───────────────── v1.6.0+0 Installed FASTX ─────────────────────── v2.1.7 Installed Scratch ───────────────────── v1.3.0 Installed FFMPEG_jll ────────────────── v6.1.3+0 Installed SimpleBufferStream ────────── v1.2.0 Installed ShaderAbstractions ────────── v0.5.0 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed GZip ──────────────────────── v0.6.2 Installed PDMats ────────────────────── v0.11.36 Installed CoordRefSystems ───────────── v0.18.10 Installed ImageCore ─────────────────── v0.10.5 Installed NamedArrays ───────────────── v0.10.5 Installed AxisArrays ────────────────── v0.4.8 Installed DocStringExtensions ───────── v0.9.5 Installed IntervalTrees ─────────────── v1.1.0 Installed PNGFiles ──────────────────── v0.4.4 Installed BioSequences ──────────────── v3.5.0 Installed JpegTurbo ─────────────────── v0.1.6 Installed CircularArrays ────────────── v1.4.0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed ForwardDiff ───────────────── v1.2.2 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0 Installed FreeType ──────────────────── v4.1.1 Installed LightXML ──────────────────── v0.9.3 Installed PkgVersion ────────────────── v0.3.3 Installed RelocatableFolders ────────── v1.0.1 Installed StackViews ────────────────── v0.1.2 Installed StringViews ───────────────── v1.3.5 Installed KernelDensity ─────────────── v0.6.10 Installed TiledIteration ────────────── v0.5.0 Installed AliasTables ───────────────── v1.1.3 Installed ColorSchemes ──────────────── v3.31.0 Installed GLFW ──────────────────────── v3.4.5 Installed SplitApplyCombine ─────────── v1.2.3 Installed ConcurrentUtilities ───────── v2.5.0 Installed SparseInverseSubset ───────── v0.1.2 Installed HashArrayMappedTries ──────── v0.2.0 Installed Combinatorics ─────────────── v1.0.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed RecipesBase ───────────────── v1.3.4 Installed SIMD ──────────────────────── v3.7.2 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed MeshIO ────────────────────── v0.5.3 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed Netpbm ────────────────────── v1.1.1 Installed Wayland_jll ───────────────── v1.24.0+0 Installed Twiddle ───────────────────── v1.1.2 Installed ImageAxes ─────────────────── v0.6.12 Installed Colors ────────────────────── v0.13.1 Installed StaticArrays ──────────────── v1.9.15 Installed StaticArraysCore ──────────── v1.4.4 Installed MolecularGraph ────────────── v0.18.0 Installed Xorg_libxkbfile_jll ───────── v1.1.3+0 Installed AbstractFFTs ──────────────── v1.5.0 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed AxisAlgorithms ────────────── v1.1.0 Installed QOI ───────────────────────── v1.0.1 Installed SciMLPublic ───────────────── v1.0.0 Installed ColorTypes ────────────────── v0.12.1 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed Requires ──────────────────── v1.3.1 Installed Glib_jll ──────────────────── v2.86.0+0 Installed BaseDirs ──────────────────── v1.3.2 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed JSON ──────────────────────── v0.21.4 Installed FreeTypeAbstraction ───────── v0.10.8 Installed Parsers ───────────────────── v2.8.3 Installed Distributions ─────────────── v0.25.122 Installed AutoHashEquals ────────────── v2.2.0 Installed Rmath ─────────────────────── v0.9.0 Installed BioGenerics ───────────────── v0.1.5 Installed FilePaths ─────────────────── v0.8.3 Installed StatsFuns ─────────────────── v1.5.2 Installed Unitful ───────────────────── v1.25.1 Installed GridLayoutBase ────────────── v0.11.2 Installed IRTools ───────────────────── v0.4.15 Installed OpenEXR ───────────────────── v0.3.3 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed SignedDistanceFields ──────── v0.4.0 Installed ZygoteRules ───────────────── v0.2.7 Installed JLLWrappers ───────────────── v1.7.1 Installed XZ_jll ────────────────────── v5.8.1+0 Installed x265_jll ──────────────────── v4.1.0+0 Installed GeometryBasics ────────────── v0.5.10 Installed ExactPredicates ───────────── v2.2.9 Installed StructTypes ───────────────── v1.11.0 Installed Pango_jll ─────────────────── v1.56.4+0 Installed Graphs ────────────────────── v1.13.1 Installed IterTools ─────────────────── v1.10.0 Installed Lazy ──────────────────────── v0.15.1 Installed TiffImages ────────────────── v0.11.6 Installed Dictionaries ──────────────── v0.4.5 Installed ModernGL ──────────────────── v1.1.8 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed FilePathsBase ─────────────── v0.9.24 Installed JpegTurbo_jll ─────────────── v3.1.3+0 Installed MIToS ─────────────────────── v3.2.3 Installed Dbus_jll ──────────────────── v1.16.2+0 Installed PaddedViews ───────────────── v0.5.12 Installed Adapt ─────────────────────── v4.4.0 Installed BioStructures ─────────────── v4.7.0 Installed Libmount_jll ──────────────── v2.41.2+0 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed TriplotBase ───────────────── v0.1.0 Installed Meshes ────────────────────── v0.53.30 Installed ExceptionUnwrapping ───────── v0.1.11 Installed Sixel ─────────────────────── v0.1.5 Installed TranscodingStreams ────────── v0.11.3 Installed Compat ────────────────────── v4.18.1 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed PlotUtils ─────────────────── v1.4.4 Installed TensorCore ────────────────── v0.1.1 Installed EarCut_jll ────────────────── v2.2.4+0 Installed Statistics ────────────────── v1.11.1 Installed ImageBase ─────────────────── v0.1.7 Installed StatsAPI ──────────────────── v1.7.1 Installed PrecompileTools ───────────── v1.3.3 Installed StringEncodings ───────────── v0.3.7 Installed StructArrays ──────────────── v0.7.2 Installed OffsetArrays ──────────────── v1.17.0 Installed MbedTLS ───────────────────── v1.1.9 Installed ProgressMeter ─────────────── v1.11.0 Installed OpenSSL ───────────────────── v1.6.0 Installed WebP ──────────────────────── v0.1.3 Installed BioSymbols ────────────────── v5.2.0 Installed TableTraitsUtils ──────────── v1.0.2 Installed BioMakie ──────────────────── v0.4.4 Installed Animations ────────────────── v0.4.2 Installed Makie ─────────────────────── v0.22.10 Installed xkbcommon_jll ─────────────── v1.9.2+0 Installed TupleTools ────────────────── v1.6.0 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed Ratios ────────────────────── v0.4.5 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed ChainRulesCore ────────────── v1.26.0 Installed GLFW_jll ──────────────────── v3.4.0+2 Installed JSON3 ─────────────────────── v1.14.3 Installed YAML ──────────────────────── v0.4.16 Installed LAME_jll ──────────────────── v3.100.3+0 Installed libvorbis_jll ─────────────── v1.3.8+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed IfElse ────────────────────── v0.1.1 Installed Isoband ───────────────────── v0.1.1 Installed PtrArrays ─────────────────── v1.3.0 Installed XML2_jll ──────────────────── v2.15.1+0 Installed FixedPointNumbers ─────────── v0.8.5 Installed IntervalSets ──────────────── v0.7.12 Installed Showoff ───────────────────── v1.0.3 Installed IntervalArithmetic ────────── v1.0.1 Installed SpecialFunctions ──────────── v2.6.1 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed FFTW ──────────────────────── v1.10.0 Installed FastaIO ───────────────────── v1.1.0 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed Rotations ─────────────────── v1.7.1 Installed LazyStack ─────────────────── v0.1.3 Installed MbedTLS_jll ───────────────── v2.28.10+0 Installed Automa ────────────────────── v1.1.0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed Xorg_libXrandr_jll ────────── v1.5.5+0 Installed IndirectArrays ────────────── v1.0.0 Installed Strided ───────────────────── v2.3.2 Installed Bessels ───────────────────── v0.2.8 Installed DelaunayTriangulation ─────── v1.6.5 Installing 70 artifacts Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Libffi 44.2 KiB Installed artifact LERC 272.9 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact FreeType2 1.5 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Ogg 250.3 KiB Installed artifact x265 1.4 MiB Installed artifact Libtiff 2.3 MiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact libdecor 44.1 KiB Installed artifact XZ 1.5 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact FriBidi 78.9 KiB Installed artifact CRlibm 169.5 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact x264 2.1 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Rmath 121.9 KiB Installed artifact libsixel 177.3 KiB Installed artifact libaom 6.4 MiB Installed artifact libinchi 933.4 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact coordgenlibs 303.6 KiB Installed artifact Expat 283.3 KiB Installed artifact libass 427.8 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Bzip2 503.5 KiB Installed artifact LAME 292.5 KiB Installed artifact OpenEXR 1.9 MiB Installed artifact Pixman 372.2 KiB Installed artifact Imath 182.8 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Cairo 2.2 MiB Installed artifact EarCut 80.5 KiB Installed artifact Wayland 390.6 KiB Installed artifact libwebp 2.6 MiB Installed artifact GLFW 180.1 KiB Installed artifact isoband 25.7 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Dbus 489.8 KiB Installed artifact Graphite2 120.2 KiB Installed artifact LZO 208.9 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact xkbcommon 263.7 KiB Installed artifact libvorbis 271.0 KiB Installed artifact FFTW 2.2 MiB Installed artifact Giflib 154.6 KiB Installed artifact Opus 925.5 KiB Installed artifact XML2 2.2 MiB Installed artifact libpng 328.4 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact FFMPEG 11.0 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Glib 7.7 MiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Libuuid 3.7 MiB Installed artifact Pango 1.1 MiB Installed artifact Libmount 6.5 MiB Installed artifact Xorg_libX11 13.9 MiB Updating `~/.julia/environments/v1.14/Project.toml` [7de43156] + BioMakie v0.4.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [15f4f7f2] + AutoHashEquals v2.2.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.3.2 [0e736298] + Bessels v0.2.8 [00701ae9] + BioAlignments v3.1.0 [47718e42] + BioGenerics v0.1.5 [7de43156] + BioMakie v0.4.4 [7e6ae17a] + BioSequences v3.5.0 [de9282ab] + BioStructures v4.7.0 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [159f3aea] + Cairo v1.1.1 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [7a955b69] + CircularArrays v1.4.0 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [03fe91ce] + Colorfy v1.1.2 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 ⌅ [b46f11dc] + CoordRefSystems v0.18.10 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [e7dc6d0d] + DataValues v0.4.13 [927a84f5] + DelaunayTriangulation v1.6.5 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.9 [460bff9d] + ExceptionUnwrapping v0.1.11 [411431e0] + Extents v0.1.6 [c2308a5c] + FASTX v2.1.7 [7a1cc6ca] + FFTW v1.10.0 [a0c94c4b] + FastaIO v1.1.0 [5789e2e9] + FileIO v1.17.1 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.2.2 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 [f7f18e0c] + GLFW v3.4.5 ⌅ [e9467ef8] + GLMakie v0.11.11 [46192b85] + GPUArraysCore v0.2.0 [92fee26a] + GZip v0.6.2 [5c1252a2] + GeometryBasics v0.5.10 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.13.1 [3955a311] + GridLayoutBase v0.11.2 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [47d2ed2b] + Hyperscript v0.0.5 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [4e3cecfd] + ImageShow v0.3.8 [313cdc1a] + Indexing v1.1.1 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 ⌅ [a98d9a8b] + Interpolations v0.15.1 [d1acc4aa] + IntervalArithmetic v1.0.1 [8197267c] + IntervalSets v0.7.12 [524e6230] + IntervalTrees v1.1.0 [3587e190] + InverseFunctions v0.1.17 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[ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 35.58s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4525.0 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4549.9 ms ✓ MacroTools 777.5 ms ✓ Reexport 904.1 ms ✓ MappedArrays 874.9 ms ✓ TensorCore 1132.5 ms ✓ ConstructionBase 2126.4 ms ✓ IrrationalConstants 794.1 ms ✓ DataValueInterfaces 857.6 ms ✓ StatsAPI 2626.7 ms ✓ Format 1051.4 ms ✓ Observables 828.4 ms ✓ Twiddle 924.7 ms ✓ RoundingEmulator 825.6 ms ✓ PolygonOps 1129.2 ms ✓ IterTools 1025.8 ms ✓ IntervalSets 826.7 ms ✓ CEnum 801.7 ms ✓ Indexing 2040.1 ms ✓ Combinatorics 1086.6 ms ✓ StringViews 978.1 ms ✓ Inflate 886.3 ms ✓ Contour 1024.0 ms ✓ TupleTools 1234.9 ms ✓ TranscodingStreams 861.4 ms ✓ LaTeXStrings 1139.0 ms ✓ Statistics 988.3 ms ✓ StaticArraysCore 918.3 ms ✓ StableRNGs 2905.1 ms ✓ AdaptivePredicates 769.9 ms ✓ IfElse 956.0 ms ✓ AutoHashEquals 800.4 ms ✓ PtrArrays 838.0 ms ✓ SimpleBufferStream 1284.7 ms ✓ Grisu 957.3 ms ✓ DataAPI 894.2 ms ✓ SciMLPublic 792.9 ms ✓ RealDot 792.9 ms ✓ CommonWorldInvalidations 1211.3 ms ✓ URIs 882.4 ms ✓ InvertedIndices 953.5 ms ✓ LazyModules 930.9 ms ✓ InverseFunctions 871.3 ms ✓ BitFlags 1116.0 ms ✓ AbstractTrees 1235.8 ms ✓ AbstractFFTs 1118.9 ms ✓ EnumX 2423.2 ms ✓ FillArrays 960.0 ms ✓ TriplotBase 861.8 ms ✓ IndirectArrays 2802.3 ms ✓ Bessels 1036.5 ms ✓ Extents 890.9 ms ✓ RangeArrays 1320.5 ms ✓ OrderedCollections 4167.4 ms ✓ ModernGL 900.7 ms ✓ HashArrayMappedTries 1267.9 ms ✓ DocStringExtensions 5320.2 ms ✓ BaseDirs 1173.2 ms ✓ IntervalTrees 1679.8 ms ✓ OffsetArrays 783.4 ms ✓ IteratorInterfaceExtensions 798.3 ms ✓ PackageExtensionCompat 991.3 ms ✓ DelimitedFiles 998.4 ms ✓ NaNMath 1224.2 ms ✓ Requires 2018.4 ms ✓ ConcurrentUtilities 1265.3 ms ✓ SuiteSparse 1429.7 ms ✓ WoodburyMatrices 1168.8 ms ✓ GZip 905.1 ms ✓ Scratch 35671.9 ms ✓ Unitful 1669.5 ms ✓ StructTypes 1077.8 ms ✓ LoggingExtras 1858.4 ms ✓ ProgressMeter 3820.8 ms ✓ UnicodeFun 1554.6 ms ✓ Compat 1179.7 ms ✓ Preferences 1199.0 ms ✓ Hyperscript 1649.5 ms ✓ ExceptionUnwrapping 4950.5 ms ✓ PkgVersion 5952.1 ms ✓ Lazy 1746.7 ms ✓ CommonSubexpressions 4135.3 ms ✓ IRTools 3540.0 ms ✓ SimpleTraits 953.1 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 4826.1 ms ✓ DataValues 799.5 ms ✓ IntervalSets → IntervalSetsRandomExt 786.0 ms ✓ IntervalSets → IntervalSetsPrintfExt 757.2 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1991.5 ms ✓ Dictionaries 943.7 ms ✓ BioGenerics 974.9 ms ✓ CodecZlib 838.1 ms ✓ SignedDistanceFields 1290.7 ms ✓ Statistics → SparseArraysExt 4197.0 ms ✓ FixedPointNumbers 1566.9 ms ✓ Distances 762.4 ms ✓ IntervalSets → IntervalSetsStatisticsExt 838.5 ms ✓ DiffResults 952.1 ms ✓ AliasTables 861.8 ms ✓ Showoff 952.0 ms ✓ Missings 1035.5 ms ✓ Quaternions 836.6 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1712.8 ms ✓ InverseFunctions → InverseFunctionsTestExt 4163.7 ms ✓ OpenSSL 851.9 ms ✓ TransformsBase 4474.0 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1500.9 ms ✓ FillArrays → FillArraysSparseArraysExt 953.9 ms ✓ FillArrays → FillArraysStatisticsExt 883.4 ms ✓ ScopedValues 1633.4 ms ✓ LogExpFunctions 952.5 ms ✓ PaddedViews 864.4 ms ✓ CircularArrays 889.7 ms ✓ StackViews 805.6 ms ✓ TableTraits 959.9 ms ✓ StridedViews 871.1 ms ✓ Ratios 952.1 ms ✓ Adapt 9127.4 ms ✓ FileIO 1789.2 ms ✓ PDMats 1278.9 ms ✓ SparseInverseSubset 1350.1 ms ✓ AxisAlgorithms 1100.0 ms ✓ FastaIO 1068.5 ms ✓ RelocatableFolders 2002.0 ms ✓ Unitful → ConstructionBaseUnitfulExt 2222.6 ms ✓ Unitful → PrintfExt 2065.1 ms ✓ Unitful → InverseFunctionsUnitfulExt 827.9 ms ✓ Compat → CompatLinearAlgebraExt 875.4 ms ✓ PrecompileTools 1152.5 ms ✓ JLLWrappers 1610.1 ms ✓ AxisArrays 1404.8 ms ✓ SplitApplyCombine 2968.7 ms ✓ NamedArrays 2883.1 ms ✓ ColorTypes 1125.9 ms ✓ Distances → DistancesSparseArraysExt 847.7 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 996.3 ms ✓ MosaicViews 1747.8 ms ✓ Tables 1904.6 ms ✓ TableTraitsUtils 762.4 ms ✓ StridedViews → StridedViewsPtrArraysExt 1215.0 ms ✓ Strided 894.0 ms ✓ Ratios → RatiosFixedPointNumbersExt 1152.2 ms ✓ ArrayInterface 1342.9 ms ✓ Adapt → AdaptSparseArraysExt 1171.2 ms ✓ GPUArraysCore 806.3 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1454.2 ms ✓ FillArrays → FillArraysPDMatsExt 2838.2 ms ✓ ChainRulesCore 2330.4 ms ✓ FilePathsBase 4186.3 ms ✓ DataStructures 2503.3 ms ✓ BioSymbols 18389.6 ms ✓ SIMD 14293.0 ms ✓ StaticArrays 2876.1 ms ✓ RecipesBase 17289.6 ms ✓ Parsers 6480.1 ms ✓ Static 1400.6 ms ✓ Libffi_jll 1372.2 ms ✓ LZO_jll 1393.4 ms ✓ EarCut_jll 1354.3 ms ✓ Bzip2_jll 1541.0 ms ✓ OpenBLASConsistentFPCSR_jll 1412.4 ms ✓ isoband_jll 1402.2 ms ✓ libinchi_jll 1494.8 ms ✓ XZ_jll 1466.3 ms ✓ Rmath_jll 1403.0 ms ✓ OpenSpecFun_jll 1417.8 ms ✓ Xorg_xtrans_jll 1460.5 ms ✓ Opus_jll 5456.2 ms ✓ IntelOpenMP_jll 1374.7 ms ✓ x265_jll 1393.9 ms ✓ libpng_jll 1410.6 ms ✓ CRlibm_jll 5144.1 ms ✓ oneTBB_jll 1399.9 ms ✓ coordgenlibs_jll 1419.9 ms ✓ Imath_jll 1163.8 ms ✓ EpollShim_jll 1404.0 ms ✓ Libmount_jll 1409.4 ms ✓ libfdk_aac_jll 1405.9 ms ✓ Libuuid_jll 1454.5 ms ✓ FriBidi_jll 1484.2 ms ✓ LERC_jll 1429.3 ms ✓ Xorg_libXau_jll 1328.7 ms ✓ Ogg_jll 1357.1 ms ✓ FFTW_jll 1345.7 ms ✓ LAME_jll 1210.9 ms ✓ Graphite2_jll 1137.0 ms ✓ x264_jll 1178.9 ms ✓ LLVMOpenMP_jll 1203.3 ms ✓ Libiconv_jll 1364.3 ms ✓ MbedTLS_jll 1471.7 ms ✓ libaom_jll 1302.2 ms ✓ Xorg_libXdmcp_jll 1411.7 ms ✓ Giflib_jll 1446.7 ms ✓ Expat_jll 1440.5 ms ✓ JpegTurbo_jll 1332.1 ms ✓ ColorTypes → StyledStringsExt 9162.7 ms ✓ Colors 3994.7 ms ✓ ColorVectorSpace 1495.4 ms ✓ StructArrays 744.1 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1178.8 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 786.0 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1484.3 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1116.9 ms ✓ LazyStack 2462.1 ms ✓ ZygoteRules 892.5 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 920.6 ms ✓ Distances → DistancesChainRulesCoreExt 3054.5 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1305.4 ms ✓ TransmuteDims 846.3 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2890.5 ms ✓ FilePathsBase → FilePathsBaseTestExt 913.8 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1242.2 ms ✓ FilePaths 1555.3 ms ✓ SortingAlgorithms 2899.2 ms ✓ QuadGK 9688.3 ms ✓ BioSequences 23155.1 ms ✓ Automa 3867.2 ms ✓ ArnoldiMethod 1343.8 ms ✓ StaticArrays → StaticArraysStatisticsExt 1401.2 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1461.5 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 5113.4 ms ✓ Rotations 1345.3 ms ✓ Adapt → AdaptStaticArraysExt 1265.3 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 2335.9 ms ✓ PairwiseListMatrices 14011.1 ms ✓ BioStructures 14860.4 ms ✓ JSON3 4164.9 ms ✓ JSON 16232.0 ms ✓ StaticArrayInterface 26647.6 ms ✓ GeometryBasics 1393.0 ms ✓ FreeType2_jll 902.0 ms ✓ Isoband 1517.9 ms ✓ Rmath 5260.9 ms ✓ SpecialFunctions 1181.1 ms ✓ CRlibm  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 10462.1 ms ✓ MKL_jll 1414.4 ms ✓ OpenEXR_jll 1396.4 ms ✓ libvorbis_jll 1530.4 ms ✓ Pixman_jll 1069.4 ms ✓ StringEncodings 1410.3 ms ✓ XML2_jll 1465.1 ms ✓ GettextRuntime_jll 2085.9 ms ✓ MbedTLS 1518.9 ms ✓ Xorg_libxcb_jll 1423.4 ms ✓ Dbus_jll 1483.6 ms ✓ Wayland_jll 1506.0 ms ✓ Libtiff_jll 1464.5 ms ✓ libsixel_jll 5845.6 ms ✓ QOI 59266.9 ms ✓ TiffImages 1454.3 ms ✓ Animations 1451.1 ms ✓ Graphics 34150.2 ms ✓ ImageCore 9506.8 ms ✓ ColorSchemes 1330.5 ms ✓ StructArrays → StructArraysSparseArraysExt 862.8 ms ✓ StructArrays → StructArraysLinearAlgebraExt 851.3 ms ✓ StructArrays → StructArraysAdaptExt 1633.3 ms ✓ StructArrays → StructArraysStaticArraysExt 5142.9 ms ✓ StatsBase 3673.7 ms ✓ BioAlignments 23191.2 ms ✓ FASTX 4333.7 ms ✓ NearestNeighbors 9961.7 ms ✓ Graphs 1951.1 ms ✓ Rotations → RotationsRecipesBaseExt 4276.9 ms ✓ Interpolations 20344.3 ms ✓ TensorCast 1559.1 ms ✓ BioStructures → BioStructuresBioSequencesExt 3504.9 ms ✓ ColorBrewer 1066.9 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1725.0 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 3725.9 ms ✓ Packing 12729.5 ms ✓ GridLayoutBase 10482.4 ms ✓ MakieCore 10429.4 ms ✓ MeshIO 6406.9 ms ✓ ShaderAbstractions 1733.8 ms ✓ FreeType 1486.1 ms ✓ Fontconfig_jll 4036.7 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2487.8 ms ✓ HypergeometricFunctions 1294.3 ms ✓ DiffRules 1367.5 ms ✓ ColorVectorSpace → SpecialFunctionsExt 5366.1 ms ✓ IntervalArithmetic 7594.3 ms ✓ FFTW 6122.1 ms ✓ OpenEXR 2733.9 ms ✓ YAML 1089.3 ms ✓ LightXML 1527.6 ms ✓ Glib_jll 28384.3 ms ✓ HTTP 1590.7 ms ✓ Xorg_libX11_jll 4593.3 ms ✓ ImageBase 7928.6 ms ✓ PNGFiles 13090.9 ms ✓ Sixel 9948.9 ms ✓ JpegTurbo 2458.8 ms ✓ Colorfy 18796.0 ms ✓ PlotUtils 13058.5 ms ✓ ChainRules 1948.4 ms ✓ PDMats → StatsBaseExt 2626.7 ms ✓ FASTX → BioSequencesExt 3771.4 ms ✓ Interpolations → InterpolationsUnitfulExt 1916.1 ms ✓ BioStructures → BioStructuresBioAlignmentsExt 1270.9 ms ✓ TiledIteration 8783.7 ms ✓ FreeTypeAbstraction 3045.4 ms ✓ StatsFuns 7037.0 ms ✓ ForwardDiff 1649.7 ms ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 1450.4 ms ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt 1367.3 ms ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 1038.7 ms ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt 1002.0 ms ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt ERROR: LoadError: Inconsistent dictionary sizes Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] NamedArray  @ ~/.julia/packages/NamedArrays/f1tMK/src/namedarraytypes.jl:71 [inlined]  [3] NamedArray  @ ~/.julia/packages/NamedArrays/f1tMK/src/constructors.jl:43 [inlined]  [4] macro expansion  @ ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:249 [inlined]  [5] MIToS.Information.ContingencyTable{Float64, 2, MIToS.MSA.UngappedAlphabet}(alphabet::MIToS.MSA.UngappedAlphabet)  @ MIToS.Information ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:235  [6] ContingencyTable  @ ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:260 [inlined]  [7] MIToS.Information.ContingencyTable(matrix::Matrix{Float64}, alphabet::MIToS.MSA.UngappedAlphabet)  @ MIToS.Information ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:266  [8] top-level scope  @ ~/.julia/packages/MIToS/zY3IT/src/Information/BLOSUM62.jl:35  [9] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [10] top-level scope  @ ~/.julia/packages/MIToS/zY3IT/src/Information/Information.jl:113  [11] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [12] top-level scope  @ ~/.julia/packages/MIToS/zY3IT/src/MIToS.jl:7  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3151  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2997  [18] include_string  @ ./loading.jl:3007 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/Information/BLOSUM62.jl:35 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/Information/Information.jl:1 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/MIToS.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 1028.42s ################################################################################ # Testing # Testing BioMakie Status `/tmp/jl_cRyIyh/Project.toml` [7de43156] BioMakie v0.4.4 [de9282ab] BioStructures v4.7.0 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 ⌅ [e9467ef8] GLMakie v0.11.11 [a09fc81d] ImageCore v0.10.5 ⌃ [51bafb47] MIToS v3.2.3 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_cRyIyh/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [15f4f7f2] AutoHashEquals v2.2.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [0e736298] Bessels v0.2.8 [00701ae9] BioAlignments v3.1.0 [47718e42] BioGenerics v0.1.5 [7de43156] BioMakie v0.4.4 [7e6ae17a] BioSequences v3.5.0 [de9282ab] BioStructures v4.7.0 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [7a955b69] CircularArrays v1.4.0 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [03fe91ce] Colorfy v1.1.2 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 ⌅ [b46f11dc] CoordRefSystems v0.18.10 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [e7dc6d0d] DataValues v0.4.13 [927a84f5] DelaunayTriangulation v1.6.5 [8bb1440f] DelimitedFiles v1.9.1 [85a47980] Dictionaries v0.4.5 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.9 [460bff9d] ExceptionUnwrapping v0.1.11 [411431e0] Extents v0.1.6 [c2308a5c] FASTX v2.1.7 [7a1cc6ca] FFTW v1.10.0 [a0c94c4b] FastaIO v1.1.0 [5789e2e9] FileIO v1.17.1 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.2.2 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [f7f18e0c] GLFW v3.4.5 ⌅ [e9467ef8] GLMakie v0.11.11 [46192b85] GPUArraysCore v0.2.0 [92fee26a] GZip v0.6.2 [5c1252a2] GeometryBasics v0.5.10 [a2bd30eb] Graphics v1.1.3 [86223c79] Graphs v1.13.1 [3955a311] GridLayoutBase v0.11.2 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [47d2ed2b] Hyperscript v0.0.5 [7869d1d1] IRTools v0.4.15 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [4e3cecfd] ImageShow v0.3.8 [313cdc1a] Indexing v1.1.1 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 ⌅ [a98d9a8b] Interpolations v0.15.1 [d1acc4aa] IntervalArithmetic v1.0.1 [8197267c] IntervalSets v0.7.12 [524e6230] IntervalTrees v1.1.0 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.10 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [8cdb02fc] LazyModules v0.3.1 [1fad7336] LazyStack v0.1.3 [9c8b4983] LightXML v0.9.3 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 ⌃ [51bafb47] MIToS v3.2.3 [1914dd2f] MacroTools v0.5.16 ⌅ [ee78f7c6] Makie v0.22.10 ⌅ [20f20a25] MakieCore v0.9.5 [dbb5928d] MappedArrays v0.4.2 [0a4f8689] MathTeXEngine v0.6.7 [739be429] MbedTLS v1.1.9 [7269a6da] MeshIO v0.5.3 ⌅ [eacbb407] Meshes v0.53.30 [e1d29d7a] Missings v1.2.0 [66fc600b] ModernGL v1.1.8 ⌅ [6c89ec66] MolecularGraph v0.18.0 [e94cdb99] MosaicViews v0.3.4 [77ba4419] NaNMath v1.1.3 [86f7a689] NamedArrays v0.10.5 [b8a86587] NearestNeighbors v0.4.22 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [4d8831e6] OpenSSL v1.6.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [f57f5aa1] PNGFiles v0.4.4 [65ce6f38] PackageExtensionCompat v1.0.2 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [f9da4da7] PairwiseListMatrices v0.11.1 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.4 [647866c9] PolygonOps v0.1.2 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.1 [1fd47b50] QuadGK v2.11.2 [94ee1d12] Quaternions v0.7.6 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [6038ab10] Rotations v1.7.1 [5eaf0fd0] RoundingEmulator v0.2.1 [fdea26ae] SIMD v3.7.2 [431bcebd] SciMLPublic v1.0.0 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [65257c39] ShaderAbstractions v0.5.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [45858cf5] Sixel v0.1.5 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [03a91e81] SplitApplyCombine v1.2.3 [860ef19b] StableRNGs v1.0.4 [cae243ae] StackViews v0.1.2 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [5e0ebb24] Strided v2.3.2 [4db3bf67] StridedViews v0.4.1 [69024149] StringEncodings v0.3.7 [354b36f9] StringViews v1.3.5 [09ab397b] StructArrays v0.7.2 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [382cd787] TableTraitsUtils v1.0.2 [bd369af6] Tables v1.12.1 [02d47bb6] TensorCast v0.4.9 [62fd8b95] TensorCore v0.1.1 [731e570b] TiffImages v0.11.6 [06e1c1a7] TiledIteration v0.5.0 [3bb67fe8] TranscodingStreams v0.11.3 [28dd2a49] TransformsBase v1.6.0 [24ddb15e] TransmuteDims v0.1.17 [981d1d27] TriplotBase v0.1.0 [9d95972d] TupleTools v1.6.0 [7200193e] Twiddle v1.1.2 [5c2747f8] URIs v1.6.1 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.25.1 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.0.0 [ddb6d928] YAML v0.4.16 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.5+0 [ee1fde0b] Dbus_jll v1.16.2+0 [5ae413db] EarCut_jll v2.2.4+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 ⌅ [b22a6f82] FFMPEG_jll v6.1.3+0 [f5851436] FFTW_jll v3.3.11+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [0656b61e] GLFW_jll v3.4.0+2 [b0724c58] GettextRuntime_jll v0.22.4+0 [59f7168a] Giflib_jll v5.2.3+0 [7746bdde] Glib_jll v2.86.0+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [905a6f67] Imath_jll v3.1.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.3+0 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [856f044c] MKL_jll v2025.2.0+0 [c8ffd9c3] MbedTLS_jll v2.28.10+0 [e7412a2a] Ogg_jll v1.3.6+0 [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] OpenEXR_jll v3.2.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.5.2+0 [36c8627f] Pango_jll v1.56.4+0 ⌅ [30392449] Pixman_jll 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SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: Inconsistent dictionary sizes Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] NamedArray  @ ~/.julia/packages/NamedArrays/f1tMK/src/namedarraytypes.jl:71 [inlined]  [3] NamedArray  @ ~/.julia/packages/NamedArrays/f1tMK/src/constructors.jl:43 [inlined]  [4] macro expansion  @ ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:249 [inlined]  [5] MIToS.Information.ContingencyTable{Float64, 2, MIToS.MSA.UngappedAlphabet}(alphabet::MIToS.MSA.UngappedAlphabet)  @ MIToS.Information ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:235  [6] ContingencyTable  @ ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:260 [inlined]  [7] MIToS.Information.ContingencyTable(matrix::Matrix{Float64}, alphabet::MIToS.MSA.UngappedAlphabet)  @ MIToS.Information ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:266  [8] top-level scope  @ ~/.julia/packages/MIToS/zY3IT/src/Information/BLOSUM62.jl:35  [9] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [10] top-level scope  @ ~/.julia/packages/MIToS/zY3IT/src/Information/Information.jl:113  [11] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [12] top-level scope  @ ~/.julia/packages/MIToS/zY3IT/src/MIToS.jl:7  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3151  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2997  [18] include_string  @ ./loading.jl:3007 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/Information/BLOSUM62.jl:35 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/Information/Information.jl:1 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/MIToS.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ MIToS │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: MIToS Failed to precompile MIToS [51bafb47-8a16-5ded-8b04-24ef4eede0b5] to "/home/pkgeval/.julia/compiled/v1.14/MIToS/jl_9XGQ4U" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/BioMakie/8NfoU/test/runtests.jl:1 Testing failed after 25.84s ERROR: LoadError: Package BioMakie errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1136.11s: package fails to precompile