Package evaluation to test Bactos on Julia 1.14.0-DEV.65 (b05afe0f25*) started at 2025-11-12T05:52:11.238 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.46s ################################################################################ # Installation # Installing Bactos... Resolving package versions... Installed MKL_jll ───────────────────────────── v2025.2.0+0 Installed FastPower ─────────────────────────── v1.2.0 Installed InlineStrings ─────────────────────── v1.4.5 Installed OrderedCollections ────────────────── v1.8.1 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed NearestNeighbors ──────────────────── v0.4.22 Installed CommonWorldInvalidations ──────────── v1.0.0 Installed SpatialIndexing ───────────────────── v0.1.6 Installed OrdinaryDiffEqRosenbrock ──────────── v1.18.1 Installed OrdinaryDiffEqExponentialRK ───────── v1.8.0 Installed EnzymeCore ────────────────────────── v0.8.16 Installed SimpleWeightedGraphs ──────────────── v1.5.0 Installed NonlinearSolveSpectralMethods ─────── v1.6.0 Installed PreallocationTools ────────────────── v0.4.34 Installed CpuId ─────────────────────────────── v0.3.1 Installed OrdinaryDiffEqFIRK ────────────────── v1.16.0 Installed SentinelArrays ────────────────────── v1.4.8 Installed NaNMath ───────────────────────────── v1.1.3 Installed Distances ─────────────────────────── v0.10.12 Installed StaticArrayInterface ──────────────── v1.8.0 Installed FileIO ────────────────────────────── v1.17.1 Installed QuadGK ────────────────────────────── v2.11.2 Installed FiniteDifferences ─────────────────── v0.12.33 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed OrdinaryDiffEqQPRK ────────────────── v1.4.0 Installed NonlinearSolveBase ────────────────── v2.2.0 Installed EnumX ─────────────────────────────── v1.0.5 Installed FastBroadcast ─────────────────────── v0.3.5 Installed NLSolversBase ─────────────────────── v7.10.0 Installed Tables ────────────────────────────── v1.12.1 Installed LinearSolve ───────────────────────── v3.46.1 Installed BracketingNonlinearSolve ──────────── v1.6.0 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.6.0 Installed Reexport ──────────────────────────── v1.2.2 Installed DiffEqBase ────────────────────────── v6.191.0 Installed InverseFunctions ──────────────────── v0.1.17 Installed Jieko ─────────────────────────────── v0.2.1 Installed Preferences ───────────────────────── v1.5.0 Installed Missings ──────────────────────────── v1.2.0 Installed Static ────────────────────────────── v1.3.1 Installed TableTraits ───────────────────────── v1.0.1 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed OrdinaryDiffEqNordsieck ───────────── v1.4.0 Installed MaybeInplace ──────────────────────── v0.1.4 Installed SortingAlgorithms ─────────────────── v1.2.2 Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.5.0 Installed Crayons ───────────────────────────── v4.1.1 Installed NonlinearSolve ────────────────────── v4.12.0 Installed OrdinaryDiffEqLinear ──────────────── v1.6.0 Installed UnPack ────────────────────────────── v1.0.2 Installed ADTypes ───────────────────────────── v1.18.0 Installed RecursiveArrayTools ───────────────── v3.39.0 Installed Inflate ───────────────────────────── v0.1.5 Installed MacroTools ────────────────────────── v0.5.16 Installed GenericSchur ──────────────────────── v0.5.6 Installed DataStructures ────────────────────── v0.18.22 Installed URIs ──────────────────────────────── v1.6.1 Installed DiffResults ───────────────────────── v1.1.0 Installed ManualMemory ──────────────────────── v0.1.8 Installed Quaternions ───────────────────────── v0.7.6 Installed FillArrays ────────────────────────── v1.15.0 Installed SparseMatrixColorings ─────────────── v0.4.23 Installed ArnoldiMethod ─────────────────────── v0.4.0 Installed oneTBB_jll ────────────────────────── v2022.0.0+1 Installed CodecZlib ─────────────────────────── v0.7.8 Installed SciMLJacobianOperators ────────────── v0.1.11 Installed ExprTools ─────────────────────────── v0.1.10 Installed ArrayInterface ────────────────────── v7.22.0 Installed StatsBase ─────────────────────────── v0.34.8 Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0 Installed DataValueInterfaces ───────────────── v1.0.0 Installed Richardson ────────────────────────── v1.4.2 Installed CommonSubexpressions ──────────────── v0.3.1 Installed LoggingExtras ─────────────────────── v1.2.0 Installed LayoutPointers ────────────────────── v0.1.17 Installed ConcreteStructs ───────────────────── v0.2.3 Installed RealDot ───────────────────────────── v0.1.0 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed QuickHeaps ────────────────────────── v0.1.2 Installed IrrationalConstants ───────────────── v0.2.6 Installed HTTP ──────────────────────────────── v1.10.19 Installed BitFlags ──────────────────────────── v0.1.9 Installed SimpleTraits ──────────────────────── v0.9.5 Installed OrdinaryDiffEqRKN ─────────────────── v1.5.0 Installed ArrayLayouts ──────────────────────── v1.12.0 Installed Bactos ────────────────────────────── v0.0.1 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.6.0 Installed OrdinaryDiffEqExtrapolation ───────── v1.9.0 Installed MetaGraphs ────────────────────────── v0.7.2 Installed Scratch ───────────────────────────── v1.3.0 Installed Setfield ──────────────────────────── v1.1.2 Installed Agents ────────────────────────────── v5.17.2 Installed SimpleBufferStream ────────────────── v1.2.0 Installed OrdinaryDiffEqPRK ─────────────────── v1.4.0 Installed NonlinearSolveQuasiNewton ─────────── v1.11.0 Installed PooledArrays ──────────────────────── v1.4.3 Installed WorkerUtilities ───────────────────── v1.6.1 Installed PDMats ────────────────────────────── v0.11.36 Installed Moshi ─────────────────────────────── v0.3.7 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.5.0 Installed CompositionsBase ──────────────────── v0.1.2 Installed CommonSolve ───────────────────────── v0.2.4 Installed DocStringExtensions ───────────────── v0.9.5 Installed ForwardDiff ───────────────────────── v1.2.2 Installed DifferentiationInterface ──────────── v0.7.11 Installed Rmath_jll ─────────────────────────── v0.5.1+0 Installed LightXML ──────────────────────────── v0.9.3 Installed SimpleUnPack ──────────────────────── v1.1.0 Installed AliasTables ───────────────────────── v1.1.3 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed OrdinaryDiffEqStabilizedRK ────────── v1.4.0 Installed ConcurrentUtilities ───────────────── v2.5.0 Installed LineSearch ────────────────────────── v0.1.4 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed RecipesBase ───────────────────────── v1.3.4 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed Krylov ────────────────────────────── v0.10.2 Installed DataAPI ───────────────────────────── v1.16.0 Installed InvertedIndices ───────────────────── v1.3.1 Installed OrdinaryDiffEqBDF ─────────────────── v1.10.1 Installed OrdinaryDiffEqSymplecticRK ────────── v1.7.0 Installed SciMLOperators ────────────────────── v1.10.0 Installed SciMLStructures ───────────────────── v1.7.0 Installed StaticArraysCore ──────────────────── v1.4.4 Installed SciMLPublic ───────────────────────── v1.0.0 Installed OrdinaryDiffEqLowStorageRK ────────── v1.7.0 Installed StringManipulation ────────────────── v0.4.1 Installed FastGaussQuadrature ───────────────── v1.1.0 Installed StaticArrays ──────────────────────── v1.9.15 Installed OrdinaryDiffEq ────────────────────── v6.103.0 Installed OrdinaryDiffEqDifferentiation ─────── v1.16.1 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.15.0 Installed Requires ──────────────────────────── v1.3.1 Installed LogExpFunctions ───────────────────── v0.3.29 Installed FunctionWrappers ──────────────────── v1.1.3 Installed DiffRules ─────────────────────────── v1.15.1 Installed JSON ──────────────────────────────── v0.21.4 Installed OrdinaryDiffEqCore ────────────────── v1.36.0 Installed Parsers ───────────────────────────── v2.8.3 Installed SciMLBase ─────────────────────────── v2.124.0 Installed CSV ───────────────────────────────── v0.10.15 Installed NonlinearSolveFirstOrder ──────────── v1.10.0 Installed LightOSM ──────────────────────────── v0.2.11 Installed PrettyTables ──────────────────────── v3.1.0 Installed FiniteDiff ────────────────────────── v2.29.0 Installed Rmath ─────────────────────────────── v0.9.0 Installed Distributions ─────────────────────── v0.25.122 Installed OrdinaryDiffEqExplicitRK ──────────── v1.4.0 Installed FastClosures ──────────────────────── v0.3.2 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed StatsFuns ─────────────────────────── v1.5.2 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.7.0 Installed OrdinaryDiffEqFeagin ──────────────── v1.4.0 Installed Polyester ─────────────────────────── v0.7.18 Installed WeakRefStrings ────────────────────── v1.4.2 Installed TestItems ─────────────────────────── v0.1.1 Installed JLLWrappers ───────────────────────── v1.7.1 Installed OrdinaryDiffEqSSPRK ───────────────── v1.7.0 Installed ArrayTools ────────────────────────── v0.2.7 Installed OrdinaryDiffEqPDIRK ───────────────── v1.6.0 Installed DataFrames ────────────────────────── v1.8.1 Installed ThreadingUtilities ────────────────── v0.5.5 Installed OrdinaryDiffEqDefault ─────────────── v1.8.0 Installed OrdinaryDiffEqSDIRK ───────────────── v1.7.0 Installed FilePathsBase ─────────────────────── v0.9.24 Installed Accessors ─────────────────────────── v0.1.42 Installed Graphs ────────────────────────────── v1.13.1 Installed OrdinaryDiffEqVerner ──────────────── v1.6.0 Installed JLD2 ──────────────────────────────── v0.4.55 Installed Adapt ─────────────────────────────── v4.4.0 Installed RuntimeGeneratedFunctions ─────────── v0.5.16 Installed ExponentialUtilities ──────────────── v1.27.0 Installed HypergeometricFunctions ───────────── v0.3.28 Installed ConstructionBase ──────────────────── v1.6.0 Installed SymbolicIndexingInterface ─────────── v0.3.46 Installed ExceptionUnwrapping ───────────────── v0.1.11 Installed TranscodingStreams ────────────────── v0.11.3 Installed Compat ────────────────────────────── v4.18.1 Installed StrideArraysCore ──────────────────── v0.5.8 Installed Statistics ────────────────────────── v1.11.1 Installed CellListMap ───────────────────────── v0.8.32 Installed LazyArrays ────────────────────────── v2.9.0 Installed ExproniconLite ────────────────────── v0.10.14 Installed PrecompileTools ───────────────────── v1.3.3 Installed StatsAPI ──────────────────────────── v1.7.1 Installed ProgressMeter ─────────────────────── v1.11.0 Installed MbedTLS ───────────────────────────── v1.1.9 Installed CPUSummary ────────────────────────── v0.2.7 Installed OpenSSL ───────────────────────────── v1.6.0 Installed StaticGraphs ──────────────────────── v0.3.1 Installed TimerOutputs ──────────────────────── v0.5.29 Installed ChainRulesCore ────────────────────── v1.26.0 Installed Parameters ────────────────────────── v0.12.3 Installed XML2_jll ──────────────────────────── v2.15.1+0 Installed IfElse ────────────────────────────── v0.1.1 Installed PtrArrays ─────────────────────────── v1.3.0 Installed MuladdMacro ───────────────────────── v0.2.4 Installed SciMLLogging ──────────────────────── v1.5.0 Installed SimpleNonlinearSolve ──────────────── v2.9.0 Installed SpecialFunctions ──────────────────── v2.6.1 Installed Libiconv_jll ──────────────────────── v1.18.0+0 Installed MbedTLS_jll ───────────────────────── v2.28.10+0 Installed OrdinaryDiffEqTsit5 ───────────────── v1.5.0 Installed OrdinaryDiffEqFunctionMap ─────────── v1.5.0 Installed Rotations ─────────────────────────── v1.7.1 Installed LineSearches ──────────────────────── v7.4.0 Installed PolyesterWeave ────────────────────── v0.2.2 Installing 5 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact XML2 2.2 MiB Installed artifact Libiconv 1.9 MiB Installed artifact MbedTLS 2.2 MiB Updating `~/.julia/environments/v1.14/Project.toml` [d33a0dba] + Bactos v0.0.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 ⌅ [46ada45e] + Agents v5.17.2 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.0 ⌅ [1dc0ca97] + ArrayTools v0.2.7 [d33a0dba] + Bactos v0.0.1 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.6.0 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 ⌅ [69e1c6dd] + CellListMap v0.8.32 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.191.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.11 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.16 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [a4df4552] + FastPower v1.2.0 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [26cc04aa] + FiniteDifferences v0.12.33 [f6369f11] + ForwardDiff v1.2.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.6 [86223c79] + Graphs v1.13.1 [cd3eb016] + HTTP v1.10.19 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.55 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [ba0b0d4f] + Krylov v0.10.2 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.9.0 ⌅ [d1922b25] + LightOSM v0.2.11 [9c8b4983] + LightXML v0.9.3 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [7ed4a6bd] + LinearSolve v3.46.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [739be429] + MbedTLS v1.1.9 ⌅ [626554b9] + MetaGraphs v0.7.2 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [8913a72c] + NonlinearSolve v4.12.0 [be0214bd] + NonlinearSolveBase v2.2.0 [5959db7a] + NonlinearSolveFirstOrder v1.10.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.11.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 [4d8831e6] + OpenSSL v1.6.0 [bac558e1] + OrderedCollections v1.8.1 [1dea7af3] + OrdinaryDiffEq v6.103.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 [6ad6398a] + OrdinaryDiffEqBDF v1.10.1 [bbf590c4] + OrdinaryDiffEqCore v1.36.0 [50262376] + OrdinaryDiffEqDefault v1.8.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.16.1 [9286f039] + OrdinaryDiffEqExplicitRK v1.4.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.8.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.9.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.16.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.5.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.7.0 [521117fe] + OrdinaryDiffEqLinear v1.6.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.6.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.7.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.15.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.4.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.6.0 [5b33eab2] + OrdinaryDiffEqPRK v1.4.0 [04162be5] + OrdinaryDiffEqQPRK v1.4.0 [af6ede74] + OrdinaryDiffEqRKN v1.5.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.18.1 [2d112036] + OrdinaryDiffEqSDIRK v1.7.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.7.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.6.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.4.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.7.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.5.0 [79d7bb75] + OrdinaryDiffEqVerner v1.6.0 [90014a1f] + PDMats v0.11.36 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [94ee1d12] + Quaternions v0.7.6 ⌅ [30b38841] + QuickHeaps v0.1.2 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.39.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [708f8203] + Richardson v1.4.2 [79098fc4] + Rmath v0.9.0 [6038ab10] + Rotations v1.7.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.124.0 [19f34311] + SciMLJacobianOperators v0.1.11 [a6db7da4] + SciMLLogging v1.5.0 [c0aeaf25] + SciMLOperators v1.10.0 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [727e6d20] + SimpleNonlinearSolve v2.9.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.23 [d4ead438] + SpatialIndexing v0.1.6 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [4c8beaf5] + StaticGraphs v0.3.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [7792a7ef] + StrideArraysCore v0.5.8 [892a3eda] + StringManipulation v0.4.1 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [1c621080] + TestItems v0.1.1 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.10+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [02c8fc9c] + XML2_jll v2.15.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 16.4s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4834.4 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4871.3 ms ✓ MacroTools 1846.2 ms ✓ InlineStrings 909.3 ms ✓ Reexport 1181.1 ms ✓ ConstructionBase 2237.8 ms ✓ IrrationalConstants 870.9 ms ✓ DataValueInterfaces 905.5 ms ✓ StatsAPI 1067.0 ms ✓ Inflate 823.2 ms ✓ CommonSolve 1426.8 ms ✓ TranscodingStreams 1008.3 ms ✓ LaTeXStrings 930.0 ms ✓ TestItems 1648.4 ms ✓ Statistics 1215.4 ms ✓ Richardson 1164.4 ms ✓ StaticArraysCore 1419.6 ms ✓ EnzymeCore 922.2 ms ✓ IfElse 943.8 ms ✓ PtrArrays 942.5 ms ✓ SimpleBufferStream 1087.9 ms ✓ ManualMemory 998.7 ms ✓ DataAPI 943.8 ms ✓ SciMLPublic 3914.6 ms ✓ ExproniconLite 843.0 ms ✓ RealDot 919.2 ms ✓ CommonWorldInvalidations 1385.1 ms ✓ URIs 904.3 ms ✓ FastPower 971.0 ms ✓ InvertedIndices 1008.4 ms ✓ InverseFunctions 1440.6 ms ✓ ArrayTools 964.1 ms ✓ CompositionsBase 1009.5 ms ✓ BitFlags 901.9 ms ✓ SimpleUnPack 858.8 ms ✓ MuladdMacro 980.6 ms ✓ EnumX 1161.8 ms ✓ WorkerUtilities 2661.9 ms ✓ FillArrays 927.1 ms ✓ ExprTools 840.1 ms ✓ UnPack 1990.6 ms ✓ SpatialIndexing 850.9 ms ✓ ConcreteStructs 1299.6 ms ✓ OrderedCollections 1664.5 ms ✓ FunctionWrappers 1500.6 ms ✓ ADTypes 1283.6 ms ✓ DocStringExtensions 951.4 ms ✓ FastClosures 801.4 ms ✓ SIMDTypes 924.5 ms ✓ IteratorInterfaceExtensions 2473.9 ms ✓ Crayons 15299.8 ms ✓ Krylov 2652.9 ms ✓ GenericSchur 1103.1 ms ✓ NaNMath 1267.6 ms ✓ Requires 2295.8 ms ✓ ConcurrentUtilities 1290.4 ms ✓ SuiteSparse 2024.4 ms ✓ CpuId 1056.5 ms ✓ Scratch 3545.5 ms ✓ SentinelArrays 1726.8 ms ✓ LoggingExtras 1960.2 ms ✓ ProgressMeter 1206.2 ms ✓ Compat 1345.9 ms ✓ Preferences 1647.0 ms ✓ ExceptionUnwrapping 1866.2 ms ✓ CommonSubexpressions 3592.1 ms ✓ SimpleTraits 856.0 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 970.5 ms ✓ CodecZlib 1295.1 ms ✓ Statistics → SparseArraysExt 1562.4 ms ✓ Distances 1000.8 ms ✓ DiffResults 1125.2 ms ✓ AliasTables 1905.6 ms ✓ ThreadingUtilities 1068.2 ms ✓ Missings 1128.4 ms ✓ PooledArrays 3682.3 ms ✓ Jieko 1221.4 ms ✓ Quaternions 971.2 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1867.3 ms ✓ InverseFunctions → InverseFunctionsTestExt 844.0 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 4154.7 ms ✓ OpenSSL 1524.6 ms ✓ FillArrays → FillArraysSparseArraysExt 983.6 ms ✓ FillArrays → FillArraysStatisticsExt 3748.4 ms ✓ TimerOutputs 1022.7 ms ✓ RuntimeGeneratedFunctions 1061.2 ms ✓ Parameters 858.5 ms ✓ FunctionWrappersWrappers 820.1 ms ✓ ADTypes → ADTypesConstructionBaseExt 2046.9 ms ✓ DifferentiationInterface 861.7 ms ✓ ADTypes → ADTypesEnzymeCoreExt 1733.5 ms ✓ LogExpFunctions 789.2 ms ✓ TableTraits 1059.7 ms ✓ Adapt 9898.1 ms ✓ FileIO 1860.5 ms ✓ PDMats 869.2 ms ✓ Compat → CompatLinearAlgebraExt 941.3 ms ✓ PrecompileTools 1212.8 ms ✓ JLLWrappers 1685.6 ms ✓ TruncatedStacktraces 1546.3 ms ✓ SciMLLogging 3239.3 ms ✓ Setfield 1293.7 ms ✓ Distances → DistancesSparseArraysExt 18468.0 ms ✓ Moshi 5633.3 ms ✓ Accessors 1407.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 920.5 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1901.7 ms ✓ Tables 1536.7 ms ✓ ArrayInterface 1569.1 ms ✓ Adapt → AdaptSparseArraysExt 1711.6 ms ✓ GPUArraysCore 855.5 ms ✓ EnzymeCore → AdaptExt 1533.5 ms ✓ FillArrays → FillArraysPDMatsExt 2941.4 ms ✓ ChainRulesCore 2277.0 ms ✓ FilePathsBase 4206.9 ms ✓ DataStructures 3493.5 ms ✓ StringManipulation 15206.2 ms ✓ StaticArrays 3152.7 ms ✓ RecipesBase 18334.7 ms ✓ Parsers 6706.7 ms ✓ Static 13305.2 ms ✓ SparseMatrixColorings 48733.3 ms ✓ JLD2 1461.7 ms ✓ Rmath_jll 1474.6 ms ✓ OpenSpecFun_jll 5456.7 ms ✓ IntelOpenMP_jll 5455.0 ms ✓ oneTBB_jll 1491.3 ms ✓ Libiconv_jll 1512.2 ms ✓ MbedTLS_jll 1845.0 ms ✓ Accessors → TestExt 2591.7 ms ✓ Accessors → LinearAlgebraExt 784.4 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 2421.8 ms ✓ MaybeInplace 1265.9 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 898.3 ms ✓ SciMLStructures 2033.2 ms ✓ PreallocationTools 868.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 816.4 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1311.8 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 830.0 ms ✓ ADTypes → ADTypesChainRulesCoreExt 896.0 ms ✓ Distances → DistancesChainRulesCoreExt 887.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 3221.0 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 843.9 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2574.4 ms ✓ FilePathsBase → FilePathsBaseTestExt 971.7 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1534.1 ms ✓ SortingAlgorithms 2715.7 ms ✓ QuadGK 1735.5 ms ✓ QuickHeaps 37607.4 ms ✓ PrettyTables 3670.6 ms ✓ ArnoldiMethod 1329.0 ms ✓ StaticArrays → StaticArraysStatisticsExt 1402.5 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1371.5 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 23296.5 ms ✓ ArrayLayouts 5353.2 ms ✓ Rotations 1479.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1451.9 ms ✓ Adapt → AdaptStaticArraysExt 1537.6 ms ✓ Accessors → StaticArraysExt 4110.0 ms ✓ JSON 985.5 ms ✓ InlineStrings → ParsersExt 962.0 ms ✓ BitTwiddlingConvenienceFunctions 2622.5 ms ✓ CPUSummary 15843.6 ms ✓ StaticArrayInterface 1663.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 1484.0 ms ✓ Rmath 5040.2 ms ✓ SpecialFunctions  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 10032.2 ms ✓ MKL_jll 1414.7 ms ✓ XML2_jll 1931.2 ms ✓ MbedTLS 4558.5 ms ✓ SciMLOperators 1312.7 ms ✓ FiniteDiff 3552.9 ms ✓ SymbolicIndexingInterface 1247.5 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 44226.4 ms ✓ ExponentialUtilities 4921.6 ms ✓ StatsBase 93539.5 ms ✓ DataFrames 4083.3 ms ✓ NearestNeighbors 8822.5 ms ✓ Graphs 2959.8 ms ✓ FiniteDifferences ERROR: LoadError: cannot declare CellListMap.copy_output exported; it is already declared public Stacktrace:  [1] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [2] top-level scope  @ ~/.julia/packages/CellListMap/6MkUi/src/CellListMap.jl:49  [3] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3151  [5] top-level scope  @ stdin:5  [6] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2997  [8] include_string  @ ./loading.jl:3007 [inlined]  [9] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [10] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/CellListMap/6MkUi/src/ParticleSystem.jl:5 in expression starting at /home/pkgeval/.julia/packages/CellListMap/6MkUi/src/CellListMap.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 690.71s ################################################################################ # Testing # Testing Bactos Status `/tmp/jl_1WA4T8/Project.toml` ⌅ [46ada45e] Agents v5.17.2 [d33a0dba] Bactos v0.0.1 ⌅ [69e1c6dd] CellListMap v0.8.32 [31c24e10] Distributions v0.25.122 [26cc04aa] FiniteDifferences v0.12.33 [1dea7af3] OrdinaryDiffEq v6.103.0 [6038ab10] Rotations v1.7.1 [90137ffa] StaticArrays v1.9.15 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_1WA4T8/Manifest.toml` [47edcb42] ADTypes v1.18.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 ⌅ [46ada45e] Agents v5.17.2 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.0 ⌅ [1dc0ca97] ArrayTools v0.2.7 [d33a0dba] Bactos v0.0.1 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.6.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 ⌅ [69e1c6dd] CellListMap v0.8.32 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.191.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.11 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.16 [460bff9d] ExceptionUnwrapping v0.1.11 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.2.0 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.2.2 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.6 [86223c79] Graphs v1.13.1 [cd3eb016] HTTP v1.10.19 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.55 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [ba0b0d4f] Krylov v0.10.2 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.9.0 ⌅ [d1922b25] LightOSM v0.2.11 [9c8b4983] LightXML v0.9.3 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.4.0 [7ed4a6bd] LinearSolve v3.46.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.9 ⌅ [626554b9] MetaGraphs v0.7.2 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.22 [8913a72c] NonlinearSolve v4.12.0 [be0214bd] NonlinearSolveBase v2.2.0 [5959db7a] NonlinearSolveFirstOrder v1.10.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.11.0 [26075421] NonlinearSolveSpectralMethods v1.6.0 [4d8831e6] OpenSSL v1.6.0 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.103.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 [6ad6398a] OrdinaryDiffEqBDF v1.10.1 [bbf590c4] OrdinaryDiffEqCore v1.36.0 [50262376] OrdinaryDiffEqDefault v1.8.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.16.1 [9286f039] OrdinaryDiffEqExplicitRK v1.4.0 [e0540318] OrdinaryDiffEqExponentialRK v1.8.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.9.0 [5960d6e9] OrdinaryDiffEqFIRK v1.16.0 [101fe9f7] OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.5.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.7.0 [521117fe] OrdinaryDiffEqLinear v1.6.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.6.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.7.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.15.0 [c9986a66] OrdinaryDiffEqNordsieck v1.4.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.6.0 [5b33eab2] OrdinaryDiffEqPRK v1.4.0 [04162be5] OrdinaryDiffEqQPRK v1.4.0 [af6ede74] OrdinaryDiffEqRKN v1.5.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.18.1 [2d112036] OrdinaryDiffEqSDIRK v1.7.0 [669c94d9] OrdinaryDiffEqSSPRK v1.7.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.6.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.4.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.7.0 [b1df2697] OrdinaryDiffEqTsit5 v1.5.0 [79d7bb75] OrdinaryDiffEqVerner v1.6.0 [90014a1f] PDMats v0.11.36 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [94ee1d12] Quaternions v0.7.6 ⌅ [30b38841] QuickHeaps v0.1.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.39.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.9.0 [6038ab10] Rotations v1.7.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.124.0 [19f34311] SciMLJacobianOperators v0.1.11 [a6db7da4] SciMLLogging v1.5.0 [c0aeaf25] SciMLOperators v1.10.0 [431bcebd] SciMLPublic v1.0.0 [53ae85a6] SciMLStructures v1.7.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [777ac1f9] SimpleBufferStream v1.2.0 [727e6d20] SimpleNonlinearSolve v2.9.0 [699a6c99] SimpleTraits v0.9.5 [ce78b400] SimpleUnPack v1.1.0 [47aef6b3] SimpleWeightedGraphs v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [0a514795] SparseMatrixColorings v0.4.23 [d4ead438] SpatialIndexing v0.1.6 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [4c8beaf5] StaticGraphs v0.3.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [7792a7ef] StrideArraysCore v0.5.8 [892a3eda] StringManipulation v0.4.1 [2efcf032] SymbolicIndexingInterface v0.3.46 [3783bdb8] 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v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: cannot declare CellListMap.copy_output exported; it is already declared public Stacktrace:  [1] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [2] top-level scope  @ ~/.julia/packages/CellListMap/6MkUi/src/CellListMap.jl:49  [3] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3151  [5] top-level scope  @ stdin:5  [6] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2997  [8] include_string  @ ./loading.jl:3007 [inlined]  [9] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [10] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/CellListMap/6MkUi/src/ParticleSystem.jl:5 in expression starting at /home/pkgeval/.julia/packages/CellListMap/6MkUi/src/CellListMap.jl:1 in expression starting at stdin:5 WARNING: Detected access to binding `Models.Bird` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `Models.SchellingAgent` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `Models.PoorSoul` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `Models.Zombie` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. 1 dependency had output during precompilation: ┌ Agents │ [Output was shown above] └ Update message: Agents v5.15 Welcome to this new update of Agents.jl! Noteworthy changes: - Agents.jl moved to Julia 1.9+, and now exports visualization and interactive applications automatically once Makie (or Makie backends such as GLMakie) come into scope, using the new package extension system. The only downside of this is that now to visualize ABMs on open street maps, the package OSMMakie.jl must be explicitly loaded as well. InteractiveDynamics.jl is now obsolete. - Several performance improvements all across the board. - DEI-motivated name change for all names that remove agents: - `genocide! -> remove_all!` - `kill_agent! -> remove_agent!` - `UnkillableABM -> UnremovableABM` - We have created an objective fully automated framework for comparing open source agent based modelling software. It shows that Agents.jl is much faster than competing alternatives (MASON, NetLogo, Mesa). See the online documentation for more! ERROR: LoadError: cannot declare CellListMap.copy_output exported; it is already declared public Stacktrace:  [1] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [2] top-level scope  @ ~/.julia/packages/CellListMap/6MkUi/src/CellListMap.jl:49  [3] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3151  [5] top-level scope  @ stdin:5  [6] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2997  [8] include_string  @ ./loading.jl:3007 [inlined]  [9] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [10] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/CellListMap/6MkUi/src/ParticleSystem.jl:5 in expression starting at /home/pkgeval/.julia/packages/CellListMap/6MkUi/src/CellListMap.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ CellListMap │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: CellListMap Failed to precompile CellListMap [69e1c6dd-3888-40e6-b3c8-31ac5f578864] to "/home/pkgeval/.julia/compiled/v1.14/CellListMap/jl_0Dixcu" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/Bactos/tHnWL/src/Bactos.jl:1 in expression starting at /home/pkgeval/.julia/packages/Bactos/tHnWL/test/runtests.jl:1 Testing failed after 266.5s ERROR: LoadError: Package Bactos errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1011.42s: package fails to precompile