Package evaluation to test AAindex on Julia 1.14.0-DEV.65 (b05afe0f25*) started at 2025-11-11T20:17:38.776 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.29s ################################################################################ # Installation # Installing AAindex... Resolving package versions... Installed CodecZlib ─────────────────── v0.7.8 Installed ConcurrentUtilities ───────── v2.5.0 Installed FilePathsBase ─────────────── v0.9.24 Installed URIs ──────────────────────── v1.6.1 Installed InlineStrings ─────────────── v1.4.5 Installed DataDeps ──────────────────── v0.7.13 Installed ExceptionUnwrapping ───────── v0.1.11 Installed DataStructures ────────────── v0.19.3 Installed Compat ────────────────────── v4.18.1 Installed OrderedCollections ────────── v1.8.1 Installed TranscodingStreams ────────── v0.11.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed Statistics ────────────────── v1.11.1 Installed DataValueInterfaces ───────── v1.0.0 Installed InvertedIndices ───────────── v1.3.1 Installed PrecompileTools ───────────── v1.3.3 Installed OpenSSL ───────────────────── v1.6.0 Installed MbedTLS ───────────────────── v1.1.9 Installed Twiddle ───────────────────── v1.1.2 Installed LoggingExtras ─────────────── v1.2.0 Installed SentinelArrays ────────────── v1.4.8 Installed StaticArrays ──────────────── v1.9.15 Installed StaticArraysCore ──────────── v1.4.4 Installed BioSymbols ────────────────── v5.2.0 Installed HTTP ──────────────────────── v1.10.19 Installed BitFlags ──────────────────── v0.1.9 Installed StringManipulation ────────── v0.4.1 Installed Tables ────────────────────── v1.12.1 Installed Parsers ───────────────────── v2.8.3 Installed Scratch ───────────────────── v1.3.0 Installed Reexport ──────────────────── v1.2.2 Installed PrettyTables ──────────────── v3.1.0 Installed SimpleBufferStream ────────── v1.2.0 Installed Preferences ───────────────── v1.5.0 Installed WeakRefStrings ────────────── v1.4.2 Installed Missings ──────────────────── v1.2.0 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed DataFrames ────────────────── v1.8.1 Installed MbedTLS_jll ───────────────── v2.28.10+0 Installed Crayons ───────────────────── v4.1.1 Installed PooledArrays ──────────────── v1.4.3 Installed CSV ───────────────────────── v0.10.15 Installed SortingAlgorithms ─────────── v1.2.2 Installed LaTeXStrings ──────────────── v1.4.0 Installed BioSequences ──────────────── v3.5.0 Installed AAindex ───────────────────── v0.3.0 Installed WorkerUtilities ───────────── v1.6.1 Installing 1 artifacts Installed artifact MbedTLS 2.2 MiB Updating `~/.julia/environments/v1.14/Project.toml` [1cd36ffe] + AAindex v0.3.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [1cd36ffe] + AAindex v0.3.0 [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [cd3eb016] + HTTP v1.10.19 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [e6f89c97] + LoggingExtras v1.2.0 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [4d8831e6] + OpenSSL v1.6.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [189a3867] + Reexport v1.2.2 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [5c2747f8] + URIs v1.6.1 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [c8ffd9c3] + MbedTLS_jll v2.28.10+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 9.7s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 6033.6 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 1862.4 ms ✓ InlineStrings 820.0 ms ✓ Reexport 1161.7 ms ✓ Statistics 1083.1 ms ✓ DataAPI 983.9 ms ✓ DataValueInterfaces 1290.8 ms ✓ StaticArraysCore 1376.8 ms ✓ URIs 1498.9 ms ✓ OrderedCollections 929.4 ms ✓ InvertedIndices 1051.3 ms ✓ Twiddle 921.1 ms ✓ BitFlags 2346.3 ms ✓ ConcurrentUtilities 1123.5 ms ✓ WorkerUtilities 1448.1 ms ✓ TranscodingStreams 858.3 ms ✓ SimpleBufferStream 792.8 ms ✓ IteratorInterfaceExtensions 886.1 ms ✓ LaTeXStrings 2270.2 ms ✓ Crayons 3453.0 ms ✓ SentinelArrays 1163.9 ms ✓ Scratch 1674.4 ms ✓ LoggingExtras 1396.6 ms ✓ Compat 1498.4 ms ✓ Preferences 1613.6 ms ✓ ExceptionUnwrapping 1576.2 ms ✓ Missings 1230.7 ms ✓ PooledArrays 3936.3 ms ✓ DataStructures 4166.9 ms ✓ OpenSSL 984.8 ms ✓ CodecZlib 780.7 ms ✓ TableTraits 879.0 ms ✓ Compat → CompatLinearAlgebraExt 1204.2 ms ✓ JLLWrappers 930.7 ms ✓ PrecompileTools 1093.4 ms ✓ SortingAlgorithms 1806.9 ms ✓ Tables 2173.7 ms ✓ FilePathsBase 1448.8 ms ✓ MbedTLS_jll 2701.6 ms ✓ BioSymbols 14837.6 ms ✓ StaticArrays 3259.9 ms ✓ StringManipulation 17995.9 ms ✓ Parsers 2895.0 ms ✓ FilePathsBase → FilePathsBaseTestExt 1065.9 ms ✓ FilePathsBase → FilePathsBaseMmapExt 2756.2 ms ✓ MbedTLS 10908.4 ms ✓ BioSequences 1730.6 ms ✓ StaticArrays → StaticArraysStatisticsExt 45071.4 ms ✓ PrettyTables 982.9 ms ✓ InlineStrings → ParsersExt 28014.0 ms ✓ HTTP 102057.7 ms ✓ DataFrames 2673.1 ms ✓ WeakRefStrings 6357.1 ms ✓ DataDeps 34976.2 ms ✓ CSV 16528.2 ms ✓ AAindex 54 dependencies successfully precompiled in 351 seconds. 21 already precompiled. Precompilation completed after 366.42s ################################################################################ # Testing # Testing AAindex Status `/tmp/jl_NTh0Qb/Project.toml` [1cd36ffe] AAindex v0.3.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_NTh0Qb/Manifest.toml` [1cd36ffe] AAindex v0.3.0 [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [cd3eb016] HTTP v1.10.19 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [b964fa9f] LaTeXStrings v1.4.0 [e6f89c97] LoggingExtras v1.2.0 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [4d8831e6] OpenSSL v1.6.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.0 [189a3867] Reexport v1.2.2 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [5c2747f8] URIs v1.6.1 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [c8ffd9c3] MbedTLS_jll v2.28.10+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [3f19e933] p7zip_jll v17.7.0+0 Testing Running tests... [ Info: Testing index [ Info: Testing parse [ Info: Testing data [ Info: Testing search Test Summary: | Pass Total Time AAindex | 26 26 17.3s Testing AAindex tests passed Testing completed after 163.99s PkgEval succeeded after 593.48s