Package evaluation to test ClimaAtmos on Julia 1.14.0-DEV.50 (b60d1db399*) started at 2025-11-10T00:48:51.116 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.34s ################################################################################ # Installation # Installing ClimaAtmos... Resolving package versions... Installed ClimaAtmos ─ v0.31.8 Updating `~/.julia/environments/v1.14/Project.toml` [b2c96348] + ClimaAtmos v0.31.8 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [c7e460c6] + ArgParse v1.2.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.0 [86bc3604] + AtmosphericProfilesLibrary v0.1.7 [a9b6321e] + Atomix v1.1.2 [13072b0f] + AxisAlgorithms v1.1.0 [aae01518] + BandedMatrices v1.10.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.9.1 [179af706] + CFTime v0.2.4 [2a0fbf3d] + CPUSummary v0.2.7 [d360d2e6] + ChainRulesCore v1.26.0 [b2c96348] + ClimaAtmos v0.31.8 [3a4d1b5c] + ClimaComms v0.6.10 [d414da3d] + ClimaCore v0.14.41 [1ecacbb8] + ClimaDiagnostics v0.2.15 [dd0f122e] + ClimaInterpolations v0.1.0 [5c42b081] + ClimaParams v1.0.3 [595c0a79] + ClimaTimeSteppers v0.8.5 [b3f4f4ca] + ClimaUtilities v0.1.27 [fb6a15b2] + CloseOpenIntervals v0.1.13 [6a9e3e04] + CloudMicrophysics v0.29.0 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [1fbeeb36] + CommonDataModel v0.4.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [7445602f] + CubedSphere v0.3.4 ⌅ [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 ⌃ [2b5f629d] + DiffEqBase v6.183.2 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [3c3547ce] + DiskArrays v0.4.18 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.15 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.2.0 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.2.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [d54b0c1a] + GaussQuadrature v0.5.8 [88fa7841] + GilbertCurves v0.1.0 [f67ccb44] + HDF5 v0.17.2 [615f187c] + IfElse v0.1.1 [e98cc03f] + Insolation v0.10.2 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.12 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [63c18a36] + KernelAbstractions v0.9.39 [ba0b0d4f] + Krylov v0.10.2 ⌅ [0b1a1467] + KrylovKit v0.8.3 [8ac3fa9e] + LRUCache v1.6.2 [10f19ff3] + LayoutPointers v0.1.17 [9dccce8e] + LazyBroadcast v1.0.0 [5c8ed15e] + LinearOperators v2.11.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [c3c07f87] + MultiBroadcastFusion v0.3.3 [85f8d34a] + NCDatasets v0.14.10 [5da4648a] + NVTX v1.0.1 [77ba4419] + NaNMath v1.1.3 [0d71be07] + NullBroadcasts v0.1.0 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [a01a1ee8] + RRTMGP v0.21.6 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.39.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7181ea78] + RootSolvers v1.0.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [94e857df] + SIMDTypes v0.1.0 ⌅ [0bca4576] + SciMLBase v2.112.0 [c0aeaf25] + SciMLOperators v1.10.0 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [0a514795] + SparseMatrixColorings v0.4.23 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [7792a7ef] + StrideArraysCore v0.5.8 [69024149] + StringEncodings v0.3.7 [49b00bb7] + SurfaceFluxes v0.13.1 [2efcf032] + SymbolicIndexingInterface v0.3.46 [6aa5eb33] + TaylorSeries v0.20.9 [b718987f] + TextWrap v1.0.2 [b60c26fb] + Thermodynamics v0.15.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [0fe1646c] + UnrolledUtilities v0.1.9 [013be700] + UnsafeAtomics v0.3.0 ⌅ [409d34a3] + VectorInterface v0.4.9 [efce3f68] + WoodburyMatrices v1.0.0 [ddb6d928] + YAML v0.4.15 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] + NVTX_jll v3.2.2+0 [7243133f] + NetCDF_jll v401.900.300+0 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.1+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 11.78s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 2947.2 ms ✓ ClimaInterpolations 7043.5 ms ✓ TaylorSeries 3838.6 ms ✓ RRTMGP 3544.4 ms ✓ CommonDataModel 1732.5 ms ✓ KrylovKit → KrylovKitChainRulesCoreExt 3518.9 ms ✓ RecursiveArrayTools 3007.6 ms ✓ AtmosphericProfilesLibrary 4046.8 ms ✓ BlockArrays → BlockArraysBandedMatricesExt 9091.8 ms ✓ CloudMicrophysics 2377.6 ms ✓ TaylorSeries → TaylorSeriesSAExt 2962.5 ms ✓ CubedSphere 858.4 ms ✓ RRTMGP → CreateParametersExt 15111.8 ms ✓ NCDatasets 1731.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 2279.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 2771.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsKernelAbstractionsExt 1581.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 23660.1 ms ✓ SciMLBase 2377.3 ms ✓ TaylorSeries → TaylorSeriesRATExt 6461.3 ms ✓ ClimaUtilities → ClimaUtilitiesNCDatasetsExt 6395.2 ms ✓ RRTMGP → RRTMGPNCDatasetsExt 5611.5 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 3677.1 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 6792.7 ms ✓ DiffEqBase 23799.4 ms ✓ ClimaCore 3936.7 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 4094.1 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 4154.3 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 12647.9 ms ✓ ClimaCore → KrylovExt 12540.0 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreExt 13095.4 ms ✓ ClimaTimeSteppers 33526.6 ms ✓ ClimaDiagnostics 12931.0 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreInterpolationsExt 15.6 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreNCDatasetsExt 42447.9 ms ✓ ClimaAtmos 34 dependencies successfully precompiled in 297 seconds. 236 already precompiled. Precompilation completed after 299.07s ################################################################################ # Testing # Testing ClimaAtmos Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_uLZ5xg/Project.toml` [4c88cf16] + Aqua v0.8.14 [a14bc488] + ArtifactWrappers v0.2.0 ⌅ [13f3f980] + CairoMakie v0.11.11 [e0c89595] + ClimaReproducibilityTests v0.1.1 [31c24e10] + Distributions v0.25.122 [442a2c76] + FastGaussQuadrature v1.1.0 [033835bb] + JLD2 v0.6.2 ⌅ [682c06a0] + JSON v0.21.4 ⌅ [08abe8d2] + PrettyTables v2.4.0 [1bc83da4] + SafeTestsets v0.1.0 [2913bbd2] + StatsBase v0.34.7 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_uLZ5xg/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [4c88cf16] + Aqua v0.8.14 [a14bc488] + ArtifactWrappers v0.2.0 [67c07d97] + Automa v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.3.2 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [159f3aea] + Cairo v1.1.1 ⌅ [13f3f980] + CairoMakie v0.11.11 [0b6fb165] + ChunkCodecCore v1.0.0 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [e0c89595] + ClimaReproducibilityTests v0.1.1 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 ⌅ [3da002f7] ↓ ColorTypes v0.12.1 ⇒ v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] ↓ Colors v0.13.1 ⇒ v0.12.11 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [927a84f5] + DelaunayTriangulation v1.6.5 [31c24e10] + Distributions v0.25.122 [429591f6] + ExactPredicates v2.2.9 [411431e0] + Extents v0.1.6 [7a1cc6ca] + FFTW v1.10.0 [442a2c76] + FastGaussQuadrature v1.1.0 [5789e2e9] + FileIO v1.17.1 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1fa38f19] + Format v1.3.7 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 [68eda718] + GeoFormatTypes v0.4.5 ⌃ [cf35fbd7] + GeoInterface v1.4.1 ⌅ [5c1252a2] + GeometryBasics v0.4.11 [a2bd30eb] + Graphics v1.1.3 ⌅ [3955a311] + GridLayoutBase v0.10.2 [42e2da0e] + Grisu v1.0.2 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [d1acc4aa] + IntervalArithmetic v1.0.1 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [033835bb] + JLD2 v0.6.2 ⌅ [682c06a0] + JSON v0.21.4 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.10 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 ⌅ [ee78f7c6] + Makie v0.20.10 ⌅ [20f20a25] + MakieCore v0.7.3 [dbb5928d] + MappedArrays v0.4.2 ⌅ [0a4f8689] + MathTeXEngine v0.5.7 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [f09324ee] + Netpbm v1.1.1 [510215fc] + Observables v0.5.5 [52e1d378] + OpenEXR v0.3.3 [90014a1f] + PDMats v0.11.36 [f57f5aa1] + PNGFiles v0.4.4 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 [995b91a9] + PlotUtils v1.4.4 [647866c9] + PolygonOps v0.1.2 ⌅ [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays v0.3.2 ⌃ [731186ca] ↓ RecursiveArrayTools v3.39.0 ⇒ v3.36.0 [05181044] + RelocatableFolders v1.0.1 [79098fc4] + Rmath v0.9.0 [5eaf0fd0] + RoundingEmulator v0.2.1 [fdea26ae] + SIMD v3.7.2 [1bc83da4] + SafeTestsets v0.1.0 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 ⌅ [65257c39] + ShaderAbstractions v0.4.1 [992d4aef] + Showoff v1.0.3 [73760f76] + SignedDistanceFields v0.4.0 [699a6c99] + SimpleTraits v0.9.5 [45858cf5] + Sixel v0.1.5 [a2af1166] + SortingAlgorithms v1.2.2 [860ef19b] + StableRNGs v1.0.3 [cae243ae] + StackViews v0.1.2 [2913bbd2] + StatsBase v0.34.7 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.1 ⌅ [09ab397b] + StructArrays v0.6.21 ⌃ [2efcf032] ↓ SymbolicIndexingInterface v0.3.46 ⇒ v0.3.44 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.6 [3bb67fe8] + TranscodingStreams v0.11.3 [981d1d27] + TriplotBase v0.1.0 [1cfade01] + UnicodeFun v0.4.1 [e3aaa7dc] + WebP v0.1.3 [4e9b3aee] + CRlibm_jll v1.0.1+0 [83423d85] + Cairo_jll v1.18.5+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.7.3+0 ⌅ [b22a6f82] + FFMPEG_jll v6.1.3+0 [f5851436] + FFTW_jll v3.3.11+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [59f7168a] + Giflib_jll v5.2.3+0 [7746bdde] + Glib_jll v2.86.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [905a6f67] + Imath_jll v3.1.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [4b2f31a3] + Libmount_jll v2.41.2+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [856f044c] + MKL_jll v2025.2.0+0 [e7412a2a] + Ogg_jll v1.3.6+0 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.2.4+0 [91d4177d] + Opus_jll v1.5.2+0 [36c8627f] + Pango_jll v1.56.4+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [9a68df92] + isoband_jll v0.2.3+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [b53b4c65] + libpng_jll v1.6.50+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [8bf52ea8] + CRC32c v1.11.0 [3fa0cd96] + REPL v1.11.0 [4607b0f0] + SuiteSparse [8dfed614] ~ Test ⇒ v1.11.0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_uLZ5xg/Project.toml` [4c88cf16] Aqua v0.8.14 [c7e460c6] ArgParse v1.2.0 [a14bc488] ArtifactWrappers v0.2.0 [86bc3604] AtmosphericProfilesLibrary v0.1.7 ⌅ [13f3f980] CairoMakie v0.11.11 [b2c96348] ClimaAtmos v0.31.8 [3a4d1b5c] ClimaComms v0.6.10 [d414da3d] ClimaCore v0.14.41 [5c42b081] ClimaParams v1.0.3 [e0c89595] ClimaReproducibilityTests v0.1.1 [595c0a79] ClimaTimeSteppers v0.8.5 [b3f4f4ca] ClimaUtilities v0.1.27 [6a9e3e04] CloudMicrophysics v0.29.0 ⌃ [2b5f629d] DiffEqBase v6.183.2 [31c24e10] Distributions v0.25.122 [442a2c76] FastGaussQuadrature v1.1.0 [e98cc03f] Insolation v0.10.2 ⌅ [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.12 [033835bb] JLD2 v0.6.2 ⌅ [682c06a0] JSON v0.21.4 [ba0b0d4f] Krylov v0.10.2 [9dccce8e] LazyBroadcast v1.0.0 [85f8d34a] NCDatasets v0.14.10 [5da4648a] NVTX v1.0.1 [0d71be07] NullBroadcasts v0.1.0 [bac558e1] OrderedCollections v1.8.1 ⌅ [08abe8d2] PrettyTables v2.4.0 [a01a1ee8] RRTMGP v0.21.6 [7181ea78] RootSolvers v1.0.0 [1bc83da4] SafeTestsets v0.1.0 ⌅ [0bca4576] SciMLBase v2.112.0 [90137ffa] StaticArrays v1.9.15 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.7 [49b00bb7] SurfaceFluxes v0.13.1 [b60c26fb] Thermodynamics v0.15.0 [ddb6d928] YAML v0.4.15 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 Status `/tmp/jl_uLZ5xg/Manifest.toml` [47edcb42] ADTypes v1.18.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [4c88cf16] Aqua v0.8.14 [c7e460c6] ArgParse v1.2.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.0 [a14bc488] ArtifactWrappers v0.2.0 [86bc3604] AtmosphericProfilesLibrary v0.1.7 [a9b6321e] Atomix v1.1.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [aae01518] BandedMatrices v1.10.1 [18cc8868] BaseDirs v1.3.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.9.1 [fa961155] CEnum v0.5.0 [179af706] CFTime v0.2.4 [2a0fbf3d] CPUSummary v0.2.7 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 ⌅ [13f3f980] CairoMakie v0.11.11 [d360d2e6] ChainRulesCore v1.26.0 [0b6fb165] ChunkCodecCore v1.0.0 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [b2c96348] ClimaAtmos v0.31.8 [3a4d1b5c] ClimaComms v0.6.10 [d414da3d] ClimaCore v0.14.41 [1ecacbb8] ClimaDiagnostics v0.2.15 [dd0f122e] ClimaInterpolations v0.1.0 [5c42b081] ClimaParams v1.0.3 [e0c89595] ClimaReproducibilityTests v0.1.1 [595c0a79] ClimaTimeSteppers v0.8.5 [b3f4f4ca] ClimaUtilities v0.1.27 [fb6a15b2] CloseOpenIntervals v0.1.13 [6a9e3e04] CloudMicrophysics v0.29.0 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [1fbeeb36] CommonDataModel v0.4.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [7445602f] CubedSphere v0.3.4 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.5 [8bb1440f] DelimitedFiles v1.9.1 ⌃ [2b5f629d] DiffEqBase v6.183.2 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [3c3547ce] DiskArrays v0.4.18 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.15 [429591f6] ExactPredicates v2.2.9 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [411431e0] Extents v0.1.6 [7a1cc6ca] FFTW v1.10.0 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.2.0 [5789e2e9] FileIO v1.17.1 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.2.2 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [d54b0c1a] GaussQuadrature v0.5.8 [68eda718] GeoFormatTypes v0.4.5 ⌃ [cf35fbd7] GeoInterface v1.4.1 ⌅ [5c1252a2] GeometryBasics v0.4.11 [88fa7841] GilbertCurves v0.1.0 [a2bd30eb] Graphics v1.1.3 ⌅ [3955a311] GridLayoutBase v0.10.2 [42e2da0e] Grisu v1.0.2 [f67ccb44] HDF5 v0.17.2 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] 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[05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Era global dataset path:`/home/pkgeval/.julia/artifacts/2e591f64c1eda58b0326c88e179a023c17f314fb` [ Info: Era single column dataset path:`/home/pkgeval/.julia/artifacts/3c60094bbd2bf81acf2822eca78bafd58e3f5a60` [ Info: topo dataset path:`/home/pkgeval/.julia/artifacts/9970989c13c2ad015ab5738d42fd9f5b320f1451` [ Info: MiMA convective gravity wave path:`/home/pkgeval/.julia/artifacts/a0dee8def6651bb1a2b394ec22802ba009281dbd` [ Info: GFDL OGWD test data:`/home/pkgeval/.julia/artifacts/c09da6f2776dad389289a1c69c8e0ae77ddf7c96` 279.952284 seconds (33.63 M allocations: 1.886 GiB, 0.70% gc time, 11.91% compilation time: 20% of which was recompilation) Test Summary: | Pass Total Time Aqua | 12 12 4m40.1s 5.123736 seconds (1.24 M allocations: 68.518 MiB, 98.99% compilation time: 2% of which was recompilation) Test Summary: | Pass Total Time Dependencies | 1 1 5.2s 3.144764 seconds (2.04 M allocations: 103.427 MiB, 1.88% gc time, 97.82% compilation time) Test Summary: | Pass Total Time Callbacks | 13 13 3.2s ┌ Warning: `FaceFiniteDifferenceSpace(mesh::IntervalMesh)` is deprecated, use `FiniteDifferenceSpace(FiniteDifferenceGrid(ClimaComms.device(), mesh), CellFace())` instead. │ caller = ip:0x0 └ @ Core :-1 [ Info: Using default configuration ┌ Warning: `job_id` is empty and likely not passed to AtmosConfig └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/ay8J8/src/solver/types.jl:1251 ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: z heights │ z_mesh.faces = │ 11-element LinRange{ClimaCore.Geometry.ZPoint{Float32}, Int64}: └ ZPoint(0.0), ZPoint(0.314159), …, ZPoint(2.82743), ZPoint(3.14159) [ Info: No surface orography warp applied Creating mock datasets for 20000506 Creating mock datasets for 20000507 Creating mock datasets for 20000508 711.923279 seconds (620.98 M allocations: 31.991 GiB, 2.93% gc time, 94.30% compilation time: <1% of which was recompilation) Test Summary: | Pass Total Time Utilities | 143 143 11m51.9s ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml 8.723820 seconds (33.14 M allocations: 986.024 MiB, 2.82% gc time, 55.53% compilation time) Test Summary: | Pass Total Time Parameter tests | 40 40 8.7s ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml [ Info: Running on CPUSingleThreaded [ Info: Setting up single-process ClimaAtmos run ┌ Info: Time info: │ dt = "600secs" │ t_start = "0secs" │ t_end = "10days" └ floor_n_steps = 1440 ┌ Warning: Running simulations without any moisture present. └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/ay8J8/src/solver/type_getters.jl:27 ┌ Warning: Running simulations without any precipitation formation. └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/ay8J8/src/solver/type_getters.jl:42 ┌ Info: numerics │ `energy_q_tot_upwinding`::`Val{:vanleer_limiter}` │ `tracer_upwinding`::`Val{:vanleer_limiter}` │ `edmfx_mse_q_tot_upwinding`::`Val{:first_order}` │ `edmfx_sgsflux_upwinding`::`Val{:none}` │ `edmfx_tracer_upwinding`::`Val{:first_order}` │ `test_dycore_consistency`::`Nothing` │ `limiter`::`Nothing` │ `diff_mode`::`ClimaAtmos.Explicit` └ `hyperdiff`::`ClimaAtmos.ClimaHyperdiffusion{Float32}` ┌ Info: AtmosModel: │ │ `water`::`ClimaAtmos.AtmosWater{ClimaAtmos.DryModel, ClimaAtmos.NoPrecipitation, ClimaAtmos.QuadratureCloud{ClimaAtmos.SGSQuadrature{3, StaticArraysCore.SVector{3, Float32}, StaticArraysCore.SVector{3, Float32}}}, ClimaAtmos.Explicit, Nothing}` │ `scm_setup`::`ClimaAtmos.SCMSetup{Nothing, Nothing, Nothing, Bool, Nothing}` │ `radiation`::`ClimaAtmos.AtmosRadiation{Nothing, ClimaAtmos.IdealizedOzone, Nothing, ClimaAtmos.IdealizedInsolation}` │ `turbconv`::`ClimaAtmos.AtmosTurbconv{ClimaAtmos.EDMFXModel{ClimaAtmos.NoEntrainment, ClimaAtmos.NoDetrainment, Val{false}, Val{false}, Val{false}, Val{false}, Val{false}, ClimaAtmos.SmoothMinimumBlending}, Nothing, ClimaAtmos.Explicit, ClimaAtmos.Explicit, ClimaAtmos.Explicit, ClimaAtmos.Explicit, ClimaAtmos.Explicit, Nothing, Nothing}` │ `gravity_wave`::`ClimaAtmos.AtmosGravityWave{Nothing, Nothing}` │ `vertical_diffusion`::`Nothing` │ `sponge`::`ClimaAtmos.AtmosSponge{Nothing, Nothing}` │ `surface`::`ClimaAtmos.AtmosSurface{ClimaAtmos.ZonallySymmetricSST, ClimaAtmos.PrescribedSST, ClimaAtmos.ConstantAlbedo{Float32}}` └ `numerics`::`ClimaAtmos.AtmosNumerics{Val{:vanleer_limiter}, Val{:vanleer_limiter}, Val{:first_order}, Val{:none}, Val{:first_order}, Nothing, Nothing, ClimaAtmos.Explicit, ClimaAtmos.ClimaHyperdiffusion{Float32}}` ┌ Info: Simulation info │ job_id = "coupler_compatibility1" └ output_dir = "coupler_compatibility1" ┌ Info: z heights │ z_mesh.faces = │ 11-element Vector{ClimaCore.Geometry.ZPoint{Float32}}: │ ZPoint(0.0) │ ZPoint(500.0) │ ZPoint(1238.1129) │ ZPoint(2316.9094) │ ⋮ │ ZPoint(17953.238) │ ZPoint(23730.424) └ ZPoint(30000.0) [ Info: No surface orography warp applied ┌ Info: Resolution stats: │ Nq = 4 │ h_elem = 6 │ z_elem = 10 │ ncols = 3456 └ ndofs_total = 34560 [ Info: Allocating Y: 5.321 s (9011129 allocations: 432.88 MiB) [ Info: using deep atmosphere [ Info: Allocating cache (p): 156.125 s (83719157 allocations: 3.88 GiB) [ Info: Using ODE config: `ClimaTimeSteppers.ARS343` [ Info: ode_configuration: 2.941 s (1631379 allocations: 81.66 MiB) [ Info: Progress logging enabled [ Info: Checking NaNs in the state every 1024 steps [ Info: get_callbacks: 782.435 ms (319784 allocations: 16.63 MiB) ┌ Warning: The keyword argument `reference_date` is deprecated. Use `start_date` instead. │ caller = (::ClimaAtmos.Diagnostics.var"#141#142"{…})(short_name::String) at default_diagnostics.jl:85 └ @ Core ~/.julia/packages/ClimaAtmos/ay8J8/src/diagnostics/default_diagnostics.jl:85 ┌ Warning: The keyword argument `reference_date` is deprecated. Use `start_date` instead. │ caller = (::ClimaAtmos.Diagnostics.var"#141#142"{…})(short_name::String) at default_diagnostics.jl:85 └ @ Core ~/.julia/packages/ClimaAtmos/ay8J8/src/diagnostics/default_diagnostics.jl:85 ┌ Warning: The keyword argument `reference_date` is deprecated. Use `start_date` instead. │ caller = (::ClimaAtmos.Diagnostics.var"#141#142"{…})(short_name::String) at default_diagnostics.jl:85 └ @ Core ~/.julia/packages/ClimaAtmos/ay8J8/src/diagnostics/default_diagnostics.jl:85 [ Info: Saving accumulated diagnostics to disk with frequency: 1 day [ Info: DictWriter: String[] [ Info: HDF5Writer: String[] [ Info: NetCDFWriter: ["orog_inst", "ts_1d_average", "ta_1d_average", "tas_1d_average", "uas_1d_average", "vas_1d_average", "thetaa_1d_average", "ha_1d_average", "pfull_1d_average", "zg_1d_average", "rhoa_1d_average", "ua_1d_average", "va_1d_average", "wa_1d_average", "hfes_1d_average", "hfss_1d_average", "ts_1d_min", "ts_1d_max"] [ Info: initializing diagnostics: 27.295 s (21072385 allocations: 1.07 GiB) [ Info: Prepared SciMLBase.CallbackSet callbacks: 22.879 ms (615 allocations: 28.39 KiB) [ Info: n_steps_per_cycle_per_cb (non diagnostics): [1024, 1, 18] [ Info: n_steps_per_cycle (non diagnostics): 9216 ┌ Info: Jacobian algorithm: ManualSparseJacobian( │ topography_flag = ClimaAtmos.IgnoreDerivative(), │ diffusion_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_advection_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_entr_detr_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_mass_flux_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_nh_pressure_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_vertdiff_flag = ClimaAtmos.IgnoreDerivative(), │ approximate_solve_iters = 1, └ ) [ Info: Define ode function: 2.151 s (1135879 allocations: 66.72 MiB) [ Info: init integrator: 17.777 s (7324735 allocations: 384.55 MiB) [ Info: Added diagnostics: 35.301 s (32118463 allocations: 1.56 GiB) ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml [ Info: Running on CPUSingleThreaded [ Info: Setting up single-process ClimaAtmos run ┌ Info: Time info: │ dt = "600secs" │ t_start = "0secs" │ t_end = "10days" └ floor_n_steps = 1440 ┌ Warning: Running simulations without any moisture present. └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/ay8J8/src/solver/type_getters.jl:27 ┌ Warning: Running simulations without any precipitation formation. └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/ay8J8/src/solver/type_getters.jl:42 ┌ Info: numerics │ `energy_q_tot_upwinding`::`Val{:vanleer_limiter}` │ `tracer_upwinding`::`Val{:vanleer_limiter}` │ `edmfx_mse_q_tot_upwinding`::`Val{:first_order}` │ `edmfx_sgsflux_upwinding`::`Val{:none}` │ `edmfx_tracer_upwinding`::`Val{:first_order}` │ `test_dycore_consistency`::`Nothing` │ `limiter`::`Nothing` │ `diff_mode`::`ClimaAtmos.Explicit` └ `hyperdiff`::`ClimaAtmos.ClimaHyperdiffusion{Float32}` ┌ Info: AtmosModel: │ │ `water`::`ClimaAtmos.AtmosWater{ClimaAtmos.DryModel, ClimaAtmos.NoPrecipitation, ClimaAtmos.QuadratureCloud{ClimaAtmos.SGSQuadrature{3, StaticArraysCore.SVector{3, Float32}, StaticArraysCore.SVector{3, Float32}}}, ClimaAtmos.Explicit, Nothing}` │ `scm_setup`::`ClimaAtmos.SCMSetup{Nothing, Nothing, Nothing, Bool, Nothing}` │ `radiation`::`ClimaAtmos.AtmosRadiation{Nothing, ClimaAtmos.IdealizedOzone, Nothing, ClimaAtmos.IdealizedInsolation}` │ `turbconv`::`ClimaAtmos.AtmosTurbconv{ClimaAtmos.EDMFXModel{ClimaAtmos.NoEntrainment, ClimaAtmos.NoDetrainment, Val{false}, Val{false}, Val{false}, Val{false}, Val{false}, ClimaAtmos.SmoothMinimumBlending}, Nothing, ClimaAtmos.Explicit, ClimaAtmos.Explicit, ClimaAtmos.Explicit, ClimaAtmos.Explicit, ClimaAtmos.Explicit, Nothing, Nothing}` │ `gravity_wave`::`ClimaAtmos.AtmosGravityWave{Nothing, Nothing}` │ `vertical_diffusion`::`Nothing` │ `sponge`::`ClimaAtmos.AtmosSponge{Nothing, Nothing}` │ `surface`::`ClimaAtmos.AtmosSurface{ClimaAtmos.ZonallySymmetricSST, ClimaAtmos.PrescribedSST, ClimaAtmos.ConstantAlbedo{Float32}}` └ `numerics`::`ClimaAtmos.AtmosNumerics{Val{:vanleer_limiter}, Val{:vanleer_limiter}, Val{:first_order}, Val{:none}, Val{:first_order}, Nothing, Nothing, ClimaAtmos.Explicit, ClimaAtmos.ClimaHyperdiffusion{Float32}}` ┌ Info: Simulation info │ job_id = "coupler_compatibility2" └ output_dir = "coupler_compatibility2/output_0000" ┌ Info: z heights │ z_mesh.faces = │ 11-element Vector{ClimaCore.Geometry.ZPoint{Float32}}: │ ZPoint(0.0) │ ZPoint(500.0) │ ZPoint(1238.1129) │ ZPoint(2316.9094) │ ⋮ │ ZPoint(17953.238) │ ZPoint(23730.424) └ ZPoint(30000.0) [ Info: No surface orography warp applied ┌ Info: Resolution stats: │ Nq = 4 │ h_elem = 6 │ z_elem = 10 │ ncols = 3456 └ ndofs_total = 34560 [ Info: Allocating Y: 72.051 ms (22 allocations: 694.2 KiB) [ Info: using deep atmosphere [ Info: Allocating cache (p): 6.25 s (7637046 allocations: 421.44 MiB) [ Info: Using ODE config: `ClimaTimeSteppers.ARS343` [ Info: ode_configuration: 221.898 μs (186 allocations: 10.88 KiB) [ Info: Progress logging enabled [ Info: Checking NaNs in the state every 1024 steps [ Info: get_callbacks: 356.909 ms (115764 allocations: 6.2 MiB) [ Info: Saving accumulated diagnostics to disk with frequency: 1 day [ Info: DictWriter: String[] [ Info: HDF5Writer: String[] [ Info: NetCDFWriter: ["orog_inst", "ts_1d_average", "ta_1d_average", "tas_1d_average", "uas_1d_average", "vas_1d_average", "thetaa_1d_average", "ha_1d_average", "pfull_1d_average", "zg_1d_average", "rhoa_1d_average", "ua_1d_average", "va_1d_average", "wa_1d_average", "hfes_1d_average", "hfss_1d_average", "ts_1d_min", "ts_1d_max"] [ Info: initializing diagnostics: 396.47 ms (84385 allocations: 5.85 MiB) [ Info: Prepared SciMLBase.CallbackSet callbacks: 9.62 μs (1 allocations: 272 bytes) [ Info: n_steps_per_cycle_per_cb (non diagnostics): [1024, 1, 18] [ Info: n_steps_per_cycle (non diagnostics): 9216 ┌ Info: Jacobian algorithm: ManualSparseJacobian( │ topography_flag = ClimaAtmos.IgnoreDerivative(), │ diffusion_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_advection_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_entr_detr_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_mass_flux_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_nh_pressure_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_vertdiff_flag = ClimaAtmos.IgnoreDerivative(), │ approximate_solve_iters = 1, └ ) [ Info: Define ode function: 1.115 ms (903 allocations: 5.39 MiB) [ Info: init integrator: 8.62 s (1159195 allocations: 73.39 MiB) [ Info: Added diagnostics: 4.741 s (1146991 allocations: 65.61 MiB) ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml [ Info: Running on CPUSingleThreaded [ Info: Setting up single-process ClimaAtmos run ┌ Info: Time info: │ dt = "600secs" │ t_start = "1secs" │ t_end = "10days" └ floor_n_steps = 1439 ┌ Warning: Running simulations with equilibrium thermodynamics assumptions. └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/ay8J8/src/solver/type_getters.jl:31 ┌ Warning: Running simulations without any precipitation formation. └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/ay8J8/src/solver/type_getters.jl:42 ┌ Info: numerics │ `energy_q_tot_upwinding`::`Val{:vanleer_limiter}` │ `tracer_upwinding`::`Val{:vanleer_limiter}` │ `edmfx_mse_q_tot_upwinding`::`Val{:first_order}` │ `edmfx_sgsflux_upwinding`::`Val{:none}` │ `edmfx_tracer_upwinding`::`Val{:first_order}` │ `test_dycore_consistency`::`Nothing` │ `limiter`::`Nothing` │ `diff_mode`::`ClimaAtmos.Explicit` └ `hyperdiff`::`ClimaAtmos.ClimaHyperdiffusion{Float32}` ┌ Info: AtmosModel: │ │ `water`::`ClimaAtmos.AtmosWater{ClimaAtmos.EquilMoistModel, ClimaAtmos.NoPrecipitation, ClimaAtmos.QuadratureCloud{ClimaAtmos.SGSQuadrature{3, StaticArraysCore.SVector{3, Float32}, StaticArraysCore.SVector{3, Float32}}}, ClimaAtmos.Explicit, Nothing}` │ `scm_setup`::`ClimaAtmos.SCMSetup{Nothing, Nothing, Nothing, Bool, Nothing}` │ `radiation`::`ClimaAtmos.AtmosRadiation{ClimaAtmos.RRTMGPInterface.ClearSkyRadiation, ClimaAtmos.IdealizedOzone, ClimaAtmos.FixedCO2{Float64}, ClimaAtmos.IdealizedInsolation}` │ `turbconv`::`ClimaAtmos.AtmosTurbconv{ClimaAtmos.EDMFXModel{ClimaAtmos.NoEntrainment, ClimaAtmos.NoDetrainment, Val{false}, Val{false}, Val{false}, Val{false}, Val{false}, ClimaAtmos.SmoothMinimumBlending}, ClimaAtmos.DiagnosticEDMFX{1, false, Float32}, ClimaAtmos.Explicit, ClimaAtmos.Explicit, ClimaAtmos.Explicit, ClimaAtmos.Explicit, ClimaAtmos.Explicit, Nothing, Nothing}` │ `gravity_wave`::`ClimaAtmos.AtmosGravityWave{Nothing, Nothing}` │ `vertical_diffusion`::`Nothing` │ `sponge`::`ClimaAtmos.AtmosSponge{Nothing, Nothing}` │ `surface`::`ClimaAtmos.AtmosSurface{ClimaAtmos.ZonallySymmetricSST, ClimaAtmos.PrescribedSST, ClimaAtmos.ConstantAlbedo{Float32}}` └ `numerics`::`ClimaAtmos.AtmosNumerics{Val{:vanleer_limiter}, Val{:vanleer_limiter}, Val{:first_order}, Val{:none}, Val{:first_order}, Nothing, Nothing, ClimaAtmos.Explicit, ClimaAtmos.ClimaHyperdiffusion{Float32}}` ┌ Info: Simulation info │ job_id = "coupler_compatibility3" └ output_dir = "coupler_compatibility3/output_0000" ┌ Info: z heights │ z_mesh.faces = │ 11-element Vector{ClimaCore.Geometry.ZPoint{Float32}}: │ ZPoint(0.0) │ ZPoint(500.0) │ ZPoint(1238.1129) │ ZPoint(2316.9094) │ ⋮ │ ZPoint(17953.238) │ ZPoint(23730.424) └ ZPoint(30000.0) [ Info: No surface orography warp applied ┌ Info: Resolution stats: │ Nq = 4 │ h_elem = 6 │ z_elem = 10 │ ncols = 3456 └ ndofs_total = 34560 [ Info: Allocating Y: 4.643 s (6026330 allocations: 287.11 MiB) [ Info: using deep atmosphere [ Info: Allocating cache (p): 252.631 s (240302266 allocations: 11.71 GiB) [ Info: Using ODE config: `ClimaTimeSteppers.ARS343` [ Info: ode_configuration: 579.004 μs (186 allocations: 10.88 KiB) [ Info: Progress logging enabled [ Info: Checking NaNs in the state every 1024 steps [ Info: get_callbacks: 566.735 ms (140844 allocations: 7.8 MiB) [ Info: Saving accumulated diagnostics to disk with frequency: [ Info: DictWriter: Any[] [ Info: HDF5Writer: Any[] [ Info: NetCDFWriter: Any[] [ Info: initializing diagnostics: 1.12 s (302128 allocations: 16.82 MiB) [ Info: Prepared SciMLBase.CallbackSet callbacks: 28.978 ms (615 allocations: 28.48 KiB) [ Info: n_steps_per_cycle_per_cb (non diagnostics): [1024, 1, 18, 36] [ Info: n_steps_per_cycle (non diagnostics): 9216 ┌ Info: Jacobian algorithm: ManualSparseJacobian( │ topography_flag = ClimaAtmos.IgnoreDerivative(), │ diffusion_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_advection_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_entr_detr_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_mass_flux_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_nh_pressure_flag = ClimaAtmos.IgnoreDerivative(), │ sgs_vertdiff_flag = ClimaAtmos.IgnoreDerivative(), │ approximate_solve_iters = 1, └ ) [ Info: Define ode function: 2.744 s (716217 allocations: 50.21 MiB) [ Info: init integrator: 120.873 s (136092884 allocations: 7.04 GiB) [ Info: Added diagnostics: 6.941 s (212284 allocations: 11.14 MiB) 935.682030 seconds (736.72 M allocations: 36.277 GiB, 3.73% gc time, 98.36% compilation time: <1% of which was recompilation) Test Summary: | Pass Total Time Coupler Compatibility | 5 5 15m35.7s ┌ Warning: `job_id` is empty and likely not passed to AtmosConfig └ @ ClimaAtmos ~/.julia/packages/ClimaAtmos/ay8J8/src/solver/types.jl:1251 ┌ Info: Making AtmosConfig with config files: └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml ┌ Info: Making AtmosConfig with config files: │ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/src/solver/../../config/default_configs/default_config.yml └ /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/config/model_configs/baroclinic_wave.yml Configuration tests: Error During Test at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 Got exception outside of a @test LoadError: IOError: readdir("config"): no such file or directory (ENOENT) Stacktrace: [1] iterate(c::Channel{Tuple{String, Vector{String}, Vector{String}}}, state::Nothing) @ Base ./channels.jl:723 [2] iterate @ ./channels.jl:706 [inlined] [3] extract_job_ids(folder_path::String) @ Main.var"##Configuration tests#360" ~/.julia/packages/ClimaAtmos/ay8J8/test/config.jl:20 [4] top-level scope @ ~/.julia/packages/ClimaAtmos/ay8J8/test/config.jl:32 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [6] IncludeInto @ ./Base.jl:311 [inlined] [7] macro expansion @ ./timing.jl:689 [inlined] [8] macro expansion @ ~/.julia/packages/ClimaAtmos/ay8J8/test/runtests.jl:26 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [10] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:26 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] top-level scope @ ~/.julia/packages/ClimaAtmos/ay8J8/test/runtests.jl:28 [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [17] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/test/config.jl:32 Test Summary: | Pass Error Total Time Configuration tests | 3 1 4 4.8s TargetJobConfig | 3 3 3.0s RNG of the outermost testset: Random.Xoshiro(0xeee135327352d50a, 0x6c5b7c1a745a700e, 0x8ac0f3e941da5736, 0x9ac36eb94aaa278c, 0x25107421244cee16) ERROR: LoadError: Some tests did not pass: 3 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ClimaAtmos/ay8J8/test/runtests.jl:26 Testing failed after 2029.18s ERROR: LoadError: Package ClimaAtmos errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 2412.75s: package tests unexpectedly errored