Package evaluation to test Stheno on Julia 1.14.0-DEV.36 (e2f3178d9b*) started at 2025-11-06T18:07:55.903 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.41s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.0 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.15.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.66 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [4c63d2b9] + StatsFuns v1.5.2 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.48s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4978.4 ms ✓ StatsBase 23170.8 ms ✓ ArrayLayouts 3696.8 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1516.3 ms ✓ PDMats → StatsBaseExt 11116.1 ms ✓ KernelFunctions 3342.6 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 4429.1 ms ✓ BlockArrays 11844.2 ms ✓ Distributions 3820.2 ms ✓ Distributions → DistributionsChainRulesCoreExt 4054.3 ms ✓ Distributions → DistributionsTestExt 5858.5 ms ✓ AbstractGPs 7469.7 ms ✓ Stheno 12 dependencies successfully precompiled in 91 seconds. 69 already precompiled. Precompilation completed after 98.19s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_znp7SK/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_znp7SK/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.12.0 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.15.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.2.2 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.6 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.39 [ec8451be] KernelFunctions v0.10.66 [929cbde3] LLVM v9.4.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.9.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.7 [4c63d2b9] StatsFuns v1.5.2 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.38+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/Ms56q/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#141` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 18m29.6s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1118s / 99.2% 28.0GiB / 99.5% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 718s 64.8% 718s 19.5GiB 70.1% 19.5GiB addition 1 397s 35.8% 397s 11.4GiB 40.8% 11.4GiB Standardised Tests (correlated sum) 1 225s 20.3% 225s 6.21GiB 22.3% 6.21GiB adj_ad 9 25.3s 2.3% 2.82s 0.97GiB 3.5% 110MiB adj_fd 9 8.98s 0.8% 998ms 300MiB 1.1% 33.3MiB Standardised Tests (independent sum) 1 127s 11.5% 127s 4.87GiB 17.5% 4.87GiB adj_ad 9 23.5s 2.1% 2.62s 1.18GiB 4.2% 134MiB adj_fd 9 10.1s 0.9% 1.12s 283MiB 1.0% 31.4MiB Correlated GPs 1 41.6s 3.8% 41.6s 264MiB 0.9% 264MiB Consistency Tests 1 17.3s 1.6% 17.3s 113MiB 0.4% 113MiB Verify mean / kernel numerically 1 2.55s 0.2% 2.55s 38.7MiB 0.1% 38.7MiB Consistency Tests 1 1.34s 0.1% 1.34s 11.8MiB 0.0% 11.8MiB product 1 149s 13.4% 149s 3.78GiB 13.5% 3.78GiB multiply by function 1 87.5s 7.9% 87.5s 2.01GiB 7.2% 2.01GiB Diff Tests 1 51.7s 4.7% 51.7s 1.52GiB 5.5% 1.52GiB adj_ad 9 20.3s 1.8% 2.26s 836MiB 2.9% 92.9MiB adj_fd 9 6.18s 0.6% 687ms 108MiB 0.4% 12.0MiB Consistency Tests 1 5.44s 0.5% 5.44s 96.4MiB 0.3% 96.4MiB multiply by constant 1 61.3s 5.5% 61.3s 1.77GiB 6.3% 1.77GiB Diff Tests 1 45.6s 4.1% 45.6s 1.72GiB 6.2% 1.72GiB adj_ad 9 14.9s 1.3% 1.65s 769MiB 2.7% 85.4MiB adj_fd 9 9.53s 0.9% 1.06s 276MiB 1.0% 30.7MiB Consistency Tests 1 3.68s 0.3% 3.68s 16.6MiB 0.1% 16.6MiB GP mul errors 1 11.8ms 0.0% 11.8ms 37.2KiB 0.0% 37.2KiB compose 1 82.8s 7.5% 82.8s 2.30GiB 8.3% 2.30GiB general 1 51.1s 4.6% 51.1s 1.50GiB 5.4% 1.50GiB Diff Tests 1 45.7s 4.1% 45.7s 1.45GiB 5.2% 1.45GiB adj_ad 9 14.7s 1.3% 1.64s 705MiB 2.5% 78.4MiB adj_fd 9 5.49s 0.5% 610ms 110MiB 0.4% 12.3MiB Consistency Tests 1 4.05s 0.4% 4.05s 32.3MiB 0.1% 32.3MiB Stretch 1 25.8s 2.3% 25.8s 720MiB 2.5% 720MiB scalar stretch 1 25.1s 2.3% 25.1s 708MiB 2.5% 708MiB scalar input 1 24.3s 2.2% 24.3s 704MiB 2.5% 704MiB adj_fd 9 8.71s 0.8% 968ms 265MiB 0.9% 29.5MiB adj_ad 9 3.31s 0.3% 368ms 136MiB 0.5% 15.1MiB vector input 1 788ms 0.1% 788ms 3.07MiB 0.0% 3.07MiB Vector stretch 1 610ms 0.1% 610ms 9.37MiB 0.0% 9.37MiB Matrix stretch 1 129ms 0.0% 129ms 2.85MiB 0.0% 2.85MiB Shift 1 3.13s 0.3% 3.13s 37.5MiB 0.1% 37.5MiB Shift{Vector{Float64}} 1 1.68s 0.2% 1.68s 13.5MiB 0.0% 13.5MiB Shift{Float64} 1 1.45s 0.1% 1.45s 23.9MiB 0.1% 23.9MiB Select 1 1.55s 0.1% 1.55s 30.0MiB 0.1% 30.0MiB evaluation 1 687ms 0.1% 687ms 19.5MiB 0.1% 19.5MiB idx isa Vector 1 506ms 0.0% 506ms 7.32MiB 0.0% 7.32MiB idx isa Integer 1 356ms 0.0% 356ms 3.19MiB 0.0% 3.19MiB Periodic 1 1.16s 0.1% 1.16s 31.2MiB 0.1% 31.2MiB cross 1 28.9s 2.6% 28.9s 1.32GiB 4.7% 1.32GiB block arrays 1 15.3s 1.4% 15.3s 769MiB 2.7% 769MiB Stheno._collect ∘ _mortar 1 12.6s 1.1% 12.6s 659MiB 2.3% 659MiB BlockMatrix 1 6.77s 0.6% 6.77s 375MiB 1.3% 375MiB adj_fd 1 926ms 0.1% 926ms 130MiB 0.5% 130MiB adj_ad 1 51.2ms 0.0% 51.2ms 2.19MiB 0.0% 2.19MiB BlockVector 1 5.83s 0.5% 5.83s 283MiB 1.0% 283MiB adj_fd 1 578ms 0.1% 578ms 11.7MiB 0.0% 11.7MiB adj_ad 1 159ms 0.0% 159ms 15.0MiB 0.1% 15.0MiB fdm stuff 1 2.73s 0.2% 2.73s 111MiB 0.4% 111MiB Correctness tests 1 8.15s 0.7% 8.15s 413MiB 1.4% 413MiB Standardised Tests 1 5.43s 0.5% 5.43s 165MiB 0.6% 165MiB gp 1 180s 16.2% 180s 4.34GiB 15.6% 4.34GiB adj_ad 2 19.3s 1.7% 9.67s 798MiB 2.8% 399MiB sparse gp 1 18.6s 1.7% 18.6s 378MiB 1.3% 378MiB SparseFiniteGP inference 1 14.1s 1.3% 14.1s 242MiB 0.8% 242MiB SparseFiniteGP methods 1 4.22s 0.4% 4.22s 131MiB 0.5% 131MiB SparseFiniteGP Constructors 1 265ms 0.0% 265ms 3.87MiB 0.0% 3.87MiB gp 1 17.2s 1.5% 17.2s 355MiB 1.2% 355MiB GP 1 16.9s 1.5% 16.9s 353MiB 1.2% 353MiB independent GPs 1 210ms 0.0% 210ms 2.47MiB 0.0% 2.47MiB wrapped AbstractGP 1 8.58ms 0.0% 8.58ms 271KiB 0.0% 271KiB adj_fd 2 2.57s 0.2% 1.29s 40.4MiB 0.1% 20.2MiB derived_gp 1 137μs 0.0% 137μs 1.94KiB 0.0% 1.94KiB gaussian_process_probabilistic_programme 1 137s 12.4% 137s 2.16GiB 7.8% 2.16GiB Zygote 1 27.2s 2.4% 27.2s 0.94GiB 3.4% 0.94GiB External Consistency 1 14.7s 1.3% 14.7s 90.7MiB 0.3% 90.7MiB nested gppp 1 14.5s 1.3% 14.5s 70.9MiB 0.2% 70.9MiB split 1 620ms 0.1% 620ms 11.0MiB 0.0% 11.0MiB gppp macro 1 54.0ms 0.0% 54.0ms 539KiB 0.0% 539KiB doctests 1 66.9s 6.0% 66.9s 1.63GiB 5.8% 1.63GiB BlockData 1 6.18s 0.6% 6.18s 215MiB 0.8% 215MiB vcat(::GPPPInput...) 1 1.42s 0.1% 1.42s 75.7MiB 0.3% 75.7MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1237.13s PkgEval succeeded after 1368.85s