Package evaluation to test ProtPlot on Julia 1.14.0-DEV.36 (e2f3178d9b*) started at 2025-11-07T03:21:33.719 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.79s ################################################################################ # Installation # Installing ProtPlot... Resolving package versions... Installed libaom_jll ────────────────── v3.13.1+0 Installed Libuuid_jll ───────────────── v2.41.2+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed ImageIO ───────────────────── v0.6.9 Installed libass_jll ────────────────── v0.17.4+0 Installed MosaicViews ───────────────── v0.3.4 Installed PolygonOps ────────────────── v0.1.2 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed Backboner ─────────────────── v0.12.2 Installed Extents ───────────────────── v0.1.6 Installed OrderedCollections ────────── v1.8.1 Installed NearestNeighbors ──────────── v0.4.22 Installed Xorg_libpciaccess_jll ─────── v0.18.1+0 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed Giflib_jll ────────────────── v5.2.3+0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed QuadGK ────────────────────── v2.11.2 Installed Distances ─────────────────── v0.10.12 Installed AdaptivePredicates ────────── v1.2.0 Installed Opus_jll ──────────────────── v1.5.2+0 Installed ScopedValues ──────────────── v1.5.0 Installed WoodburyMatrices ──────────── v1.0.0 Installed HDF5_jll ──────────────────── v1.14.6+0 Installed Ogg_jll ───────────────────── v1.3.6+0 Installed Tables ────────────────────── v1.12.1 Installed FileIO ────────────────────── v1.17.1 Installed ProteinChains ─────────────── v0.5.3 Installed EnumX ─────────────────────── v1.0.5 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed LZO_jll ───────────────────── v2.10.3+0 Installed Reexport ──────────────────── v1.2.2 Installed InverseFunctions ──────────── v0.1.17 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Missings ──────────────────── v1.2.0 Installed Preferences ───────────────── v1.5.0 Installed TableTraits ───────────────── v1.0.1 Installed Imath_jll ─────────────────── v3.1.11+0 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed MappedArrays ──────────────── v0.4.2 Installed LaTeXStrings ──────────────── v1.4.0 Installed Grisu ─────────────────────── v1.0.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed RangeArrays ───────────────── v0.3.2 Installed CRlibm ────────────────────── v1.0.2 Installed Format ────────────────────── v1.3.7 Installed Inflate ───────────────────── v0.1.5 Installed MacroTools ────────────────── v0.5.16 Installed ColorBrewer ───────────────── v0.4.2 Installed DataStructures ────────────── v0.19.3 Installed AbstractTrees ─────────────── v0.4.5 Installed Quaternions ───────────────── v0.7.6 Installed FillArrays ────────────────── v1.15.0 Installed Packing ───────────────────── v0.5.1 Installed OpenEXR_jll ───────────────── v3.2.4+0 Installed LazyModules ───────────────── v0.3.1 Installed libaec_jll ────────────────── v1.1.4+0 Installed MakieCore ─────────────────── v0.10.0 Installed oneTBB_jll ────────────────── v2022.0.0+1 Installed ArnoldiMethod ─────────────── v0.4.0 Installed UnicodeFun ────────────────── v0.4.1 Installed x264_jll ──────────────────── v10164.0.1+0 Installed CodecZlib ─────────────────── v0.7.8 Installed Observables ───────────────── v0.5.5 Installed StatsBase ─────────────────── v0.34.7 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed ProtPlot ──────────────────── v0.5.17 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed DataValueInterfaces ───────── v1.0.0 Installed Libffi_jll ────────────────── v3.4.7+0 Installed CEnum ─────────────────────── v0.5.0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed RealDot ───────────────────── v0.1.0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed StructUtils ───────────────── v2.5.1 Installed IrrationalConstants ───────── v0.2.6 Installed GPUArraysCore ─────────────── v0.2.0 Installed libpng_jll ────────────────── v1.6.50+0 Installed isoband_jll ───────────────── v0.2.3+0 Installed ColorVectorSpace ──────────── v0.11.0 Installed Contour ───────────────────── v0.6.3 Installed SimpleTraits ──────────────── v0.9.5 Installed MathTeXEngine ─────────────── v0.6.7 Installed RoundingEmulator ──────────── v0.2.1 Installed ImageMetadata ─────────────── v0.9.10 Installed Dierckx_jll ───────────────── v0.2.0+0 Installed Interpolations ────────────── v0.15.1 Installed StableRNGs ────────────────── v1.0.3 Installed OpenMPI_jll ───────────────── v5.0.8+0 Installed libfdk_aac_jll ────────────── v2.0.4+0 Installed Hwloc_jll ─────────────────── v2.12.2+0 Installed libsixel_jll ──────────────── v1.10.5+0 Installed libwebp_jll ───────────────── v1.6.0+0 Installed Scratch ───────────────────── v1.3.0 Installed FFMPEG_jll ────────────────── v6.1.3+0 Installed ShaderAbstractions ────────── v0.5.0 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed PDMats ────────────────────── v0.11.36 Installed AxisArrays ────────────────── v0.4.8 Installed PNGFiles ──────────────────── v0.4.4 Installed DocStringExtensions ───────── v0.9.5 Installed ImageCore ─────────────────── v0.10.5 Installed JpegTurbo ─────────────────── v0.1.6 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0 Installed FreeType ──────────────────── v4.1.1 Installed PkgVersion ────────────────── v0.3.3 Installed StackViews ────────────────── v0.1.2 Installed RelocatableFolders ────────── v1.0.1 Installed KernelDensity ─────────────── v0.6.10 Installed MPICH_jll ─────────────────── v4.3.2+0 Installed AliasTables ───────────────── v1.1.3 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 Installed HashArrayMappedTries ──────── v0.2.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed SIMD ──────────────────────── v3.7.2 Installed RecipesBase ───────────────── v1.3.4 Installed NNlib ─────────────────────── v0.9.31 Installed DataAPI ───────────────────── v1.16.0 Installed Netpbm ────────────────────── v1.1.1 Installed StaticArraysCore ──────────── v1.4.4 Installed ImageAxes ─────────────────── v0.6.12 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed AbstractFFTs ──────────────── v1.5.0 Installed Colors ────────────────────── v0.13.1 Installed QOI ───────────────────────── v1.0.1 Installed StaticArrays ──────────────── v1.9.15 Installed AxisAlgorithms ────────────── v1.1.0 Installed Requires ──────────────────── v1.3.1 Installed ColorTypes ────────────────── v0.12.1 Installed Glib_jll ──────────────────── v2.86.0+0 Installed BaseDirs ──────────────────── v1.3.2 Installed LogExpFunctions ───────────── v0.3.29 Installed Parsers ───────────────────── v2.8.3 Installed FreeTypeAbstraction ───────── v0.10.8 Installed Rmath ─────────────────────── v0.9.0 Installed JSON ──────────────────────── v1.2.0 Installed UnsafeAtomics ─────────────── v0.3.0 Installed FilePaths ─────────────────── v0.8.3 Installed BioGenerics ───────────────── v0.1.5 Installed StatsFuns ─────────────────── v1.5.2 Installed GridLayoutBase ────────────── v0.11.2 Installed Unitful ───────────────────── v1.25.1 Installed Distributions ─────────────── v0.25.122 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed SignedDistanceFields ──────── v0.4.0 Installed OpenEXR ───────────────────── v0.3.3 Installed JLLWrappers ───────────────── v1.7.1 Installed XZ_jll ────────────────────── v5.8.1+0 Installed x265_jll ──────────────────── v4.1.0+0 Installed GeometryBasics ────────────── v0.5.10 Installed ExactPredicates ───────────── v2.2.9 Installed IterTools ─────────────────── v1.10.0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed Graphs ────────────────────── v1.13.1 Installed Dierckx ───────────────────── v0.5.4 Installed TiffImages ────────────────── v0.11.6 Installed JpegTurbo_jll ─────────────── v3.1.3+0 Installed FilePathsBase ─────────────── v0.9.24 Installed PaddedViews ───────────────── v0.5.12 Installed Adapt ─────────────────────── v4.4.0 Installed PeriodicTable ─────────────── v1.2.1 Installed HypergeometricFunctions ───── v0.3.28 Installed ConstructionBase ──────────── v1.6.0 Installed ColorSchemes ──────────────── v3.31.0 Installed BioStructures ─────────────── v4.7.0 Installed Libmount_jll ──────────────── v2.41.2+0 Installed TriplotBase ───────────────── v0.1.0 Installed Compat ────────────────────── v4.18.1 Installed Sixel ─────────────────────── v0.1.5 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed PlotUtils ─────────────────── v1.4.4 Installed TranscodingStreams ────────── v0.11.3 Installed EarCut_jll ────────────────── v2.2.4+0 Installed TensorCore ────────────────── v0.1.1 Installed Statistics ────────────────── v1.11.1 Installed ImageBase ─────────────────── v0.1.7 Installed Atomix ────────────────────── v1.1.2 Installed PrecompileTools ───────────── v1.3.3 Installed StatsAPI ──────────────────── v1.7.1 Installed StructArrays ──────────────── v0.7.2 Installed ProgressMeter ─────────────── v1.11.0 Installed OffsetArrays ──────────────── v1.17.0 Installed WebP ──────────────────────── v0.1.3 Installed BioSymbols ────────────────── v5.2.0 Installed Ratios ────────────────────── v0.4.5 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed ChainRulesCore ────────────── v1.26.0 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed Animations ────────────────── v0.4.2 Installed KernelAbstractions ────────── v0.9.39 Installed LAME_jll ──────────────────── v3.100.3+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed libvorbis_jll ─────────────── v1.3.8+0 Installed Isoband ───────────────────── v0.1.1 Installed PtrArrays ─────────────────── v1.3.0 Installed XML2_jll ──────────────────── v2.13.9+0 Installed AssigningSecondaryStructure ─ v0.5.1 Installed IntervalArithmetic ────────── v1.0.1 Installed FixedPointNumbers ─────────── v0.8.5 Installed IntervalSets ──────────────── v0.7.11 Installed SpecialFunctions ──────────── v2.6.1 Installed MPIPreferences ────────────── v0.1.11 Installed Showoff ───────────────────── v1.0.3 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed FFTW ──────────────────────── v1.10.0 Installed Rotations ─────────────────── v1.7.1 Installed Makie ─────────────────────── v0.23.0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed IndirectArrays ────────────── v1.0.0 Installed MPItrampoline_jll ─────────── v5.5.4+0 Installed Automa ────────────────────── v1.1.0 Installed HDF5 ──────────────────────── v0.17.2 Installed DelaunayTriangulation ─────── v1.6.5 Installing 59 artifacts Installed artifact Xorg_xtrans 48.2 KiB Installed artifact libaec 49.6 KiB Installed artifact LERC 272.9 KiB Installed artifact LZO 208.9 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Opus 925.5 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact OpenEXR 1.9 MiB Installed artifact Fontconfig 984.8 KiB Installed artifact XZ 1.5 MiB Installed artifact Pixman 372.2 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact isoband 25.7 KiB Installed artifact libass 427.8 KiB Installed artifact Libmount 6.5 MiB Installed artifact Rmath 121.9 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Graphite2 120.2 KiB Installed artifact FriBidi 78.9 KiB Installed artifact libpng 328.4 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Dierckx 149.2 KiB Installed artifact Libffi 44.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact libaom 6.4 MiB Installed artifact HDF5 5.7 MiB Installed artifact Libuuid 3.7 MiB Installed artifact FreeType2 1.5 MiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact MPICH 3.3 MiB Installed artifact Ogg 250.3 KiB Installed artifact Libtiff 2.3 MiB Installed artifact libvorbis 271.0 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact CRlibm 169.5 KiB Installed artifact x264 2.1 MiB Installed artifact libsixel 177.3 KiB Installed artifact x265 1.4 MiB Installed artifact Giflib 154.6 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact FFTW 2.2 MiB Installed artifact Imath 182.8 KiB Installed artifact Cairo 2.2 MiB Installed artifact Hwloc 3.5 MiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Installed artifact EarCut 80.5 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Expat 283.3 KiB Installed artifact LAME 292.5 KiB Installed artifact libwebp 2.6 MiB Installed artifact XML2 2.5 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact FFMPEG 11.0 MiB Installed artifact Glib 7.7 MiB Updating `~/.julia/environments/v1.14/Project.toml` [77b3afcc] + ProtPlot v0.5.17 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [ec485272] + ArnoldiMethod v0.4.0 [8ed43e74] + AssigningSecondaryStructure v0.5.1 [a9b6321e] + Atomix v1.1.2 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [9ac9c2a2] + Backboner v0.12.2 [18cc8868] + BaseDirs v1.3.2 [47718e42] + BioGenerics v0.1.5 [de9282ab] + BioStructures v4.7.0 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [d360d2e6] + ChainRulesCore v1.26.0 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [927a84f5] + DelaunayTriangulation v1.6.5 [39dd38d3] + Dierckx v0.5.4 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.9 [411431e0] + Extents v0.1.6 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.1 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 [46192b85] + GPUArraysCore v0.2.0 [5c1252a2] + GeometryBasics v0.5.10 [86223c79] + Graphs v1.13.1 [3955a311] + GridLayoutBase v0.11.2 [42e2da0e] + Grisu v1.0.2 [f67ccb44] + HDF5 v0.17.2 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 ⌅ [a98d9a8b] + Interpolations v0.15.1 [d1acc4aa] + IntervalArithmetic v1.0.1 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.2.0 [b835a17e] + JpegTurbo v0.1.6 [63c18a36] + KernelAbstractions v0.9.39 [5ab0869b] + KernelDensity v0.6.10 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 ⌅ [ee78f7c6] + Makie v0.23.0 [20f20a25] + MakieCore v0.10.0 [dbb5928d] + MappedArrays v0.4.2 [0a4f8689] + MathTeXEngine v0.6.7 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [872c559c] + NNlib v0.9.31 [b8a86587] + NearestNeighbors v0.4.22 [f09324ee] + Netpbm v1.1.1 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [f57f5aa1] + PNGFiles v0.4.4 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [eebad327] + PkgVersion v0.3.3 [995b91a9] + PlotUtils v1.4.4 [647866c9] + PolygonOps v0.1.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [77b3afcc] + ProtPlot v0.5.17 ⌃ [b8e8f2a5] + ProteinChains v0.5.3 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [1fd47b50] + QuadGK v2.11.2 [94ee1d12] + Quaternions v0.7.6 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [6038ab10] + Rotations v1.7.1 [5eaf0fd0] + RoundingEmulator v0.2.1 [fdea26ae] + SIMD v3.7.2 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [65257c39] + ShaderAbstractions v0.5.0 [992d4aef] + Showoff v1.0.3 [73760f76] + SignedDistanceFields v0.4.0 [699a6c99] + SimpleTraits v0.9.5 [45858cf5] + Sixel v0.1.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.3 [cae243ae] + StackViews v0.1.2 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [4c63d2b9] + StatsFuns v1.5.2 [09ab397b] + StructArrays v0.7.2 [ec057cc2] + StructUtils v2.5.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.6 [3bb67fe8] + TranscodingStreams v0.11.3 [981d1d27] + TriplotBase v0.1.0 [1cfade01] + UnicodeFun v0.4.1 [1986cc42] + Unitful v1.25.1 [013be700] + UnsafeAtomics v0.3.0 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.0.0 [6e34b625] + Bzip2_jll v1.0.9+0 [4e9b3aee] + CRlibm_jll v1.0.1+0 [83423d85] + Cairo_jll v1.18.5+0 [cd4c43a9] + Dierckx_jll v0.2.0+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.7.3+0 ⌅ [b22a6f82] + FFMPEG_jll v6.1.3+0 [f5851436] + FFTW_jll v3.3.11+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [59f7168a] + Giflib_jll v5.2.3+0 [7746bdde] + Glib_jll v2.86.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [0234f1f7] + HDF5_jll v1.14.6+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [905a6f67] + Imath_jll v3.1.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e7412a2a] + Ogg_jll v1.3.6+0 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.2.4+0 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.5.2+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [9a68df92] + isoband_jll v0.2.3+0 [477f73a3] + libaec_jll v1.1.4+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [b53b4c65] + libpng_jll v1.6.50+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [8bf52ea8] + CRC32c v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 31.84s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4565.0 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4230.6 ms ✓ MacroTools 735.0 ms ✓ Reexport 896.9 ms ✓ MappedArrays 830.3 ms ✓ TensorCore 1134.4 ms ✓ ConstructionBase 1973.7 ms ✓ IrrationalConstants 771.5 ms ✓ DataValueInterfaces 833.0 ms ✓ StatsAPI 2327.8 ms ✓ Format 1001.4 ms ✓ Observables 897.5 ms ✓ RoundingEmulator 796.4 ms ✓ PolygonOps 1148.9 ms ✓ IterTools 1016.3 ms ✓ IntervalSets 838.5 ms ✓ CEnum 988.9 ms ✓ Inflate 902.6 ms ✓ Contour 1251.7 ms ✓ TranscodingStreams 823.5 ms ✓ LaTeXStrings 1110.2 ms ✓ Statistics 929.5 ms ✓ StaticArraysCore 890.7 ms ✓ StableRNGs 2784.1 ms ✓ AdaptivePredicates 782.0 ms ✓ PtrArrays 1197.6 ms ✓ Grisu 847.7 ms ✓ DataAPI 787.4 ms ✓ RealDot 3467.4 ms ✓ UnsafeAtomics 982.3 ms ✓ LazyModules 913.3 ms ✓ InverseFunctions 1124.4 ms ✓ AbstractTrees 1029.5 ms ✓ AbstractFFTs 847.1 ms ✓ EnumX 2114.9 ms ✓ FillArrays 919.1 ms ✓ TriplotBase 822.1 ms ✓ IndirectArrays 993.5 ms ✓ Extents 824.1 ms ✓ RangeArrays 1238.0 ms ✓ OrderedCollections 898.4 ms ✓ HashArrayMappedTries 1112.2 ms ✓ DocStringExtensions 4743.0 ms ✓ BaseDirs 1581.4 ms ✓ OffsetArrays 726.5 ms ✓ IteratorInterfaceExtensions 1175.3 ms ✓ Requires 1243.9 ms ✓ SuiteSparse 1420.8 ms ✓ WoodburyMatrices 935.3 ms ✓ Scratch 32609.8 ms ✓ Unitful 1532.2 ms ✓ StructUtils 1803.8 ms ✓ ProgressMeter 3471.8 ms ✓ UnicodeFun 1533.6 ms ✓ Compat 1139.3 ms ✓ Preferences 4837.1 ms ✓ PkgVersion 3325.3 ms ✓ SimpleTraits 936.5 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 740.3 ms ✓ IntervalSets → IntervalSetsRandomExt 745.3 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 881.5 ms ✓ BioGenerics 941.5 ms ✓ CodecZlib 800.4 ms ✓ SignedDistanceFields 1270.4 ms ✓ Statistics → SparseArraysExt 3632.3 ms ✓ FixedPointNumbers 1399.2 ms ✓ Distances 741.6 ms ✓ IntervalSets → IntervalSetsStatisticsExt 949.6 ms ✓ AliasTables 851.4 ms ✓ Showoff 988.0 ms ✓ Missings 1063.3 ms ✓ Quaternions 929.7 ms ✓ Atomix 850.3 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1660.2 ms ✓ InverseFunctions → InverseFunctionsTestExt 3573.6 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1502.2 ms ✓ FillArrays → FillArraysSparseArraysExt 940.3 ms ✓ FillArrays → FillArraysStatisticsExt 3532.8 ms ✓ DataStructures 875.5 ms ✓ ScopedValues 1578.2 ms ✓ LogExpFunctions 1005.9 ms ✓ PaddedViews 876.2 ms ✓ StackViews 761.2 ms ✓ TableTraits 825.0 ms ✓ Ratios 917.6 ms ✓ Adapt 8838.6 ms ✓ FileIO 1856.6 ms ✓ PDMats 1378.9 ms ✓ AxisAlgorithms 1116.1 ms ✓ RelocatableFolders 1905.6 ms ✓ Unitful → ConstructionBaseUnitfulExt 2121.7 ms ✓ Unitful → PrintfExt 1962.8 ms ✓ Unitful → InverseFunctionsUnitfulExt 832.8 ms ✓ Compat → CompatLinearAlgebraExt 917.3 ms ✓ PrecompileTools 1234.4 ms ✓ JLLWrappers 1432.7 ms ✓ MPIPreferences 1471.1 ms ✓ AxisArrays 2611.3 ms ✓ ColorTypes 1260.5 ms ✓ Distances → DistancesSparseArraysExt 1050.2 ms ✓ SortingAlgorithms 2303.0 ms ✓ QuadGK 853.9 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1036.3 ms ✓ MosaicViews 1717.9 ms ✓ Tables 895.1 ms ✓ Ratios → RatiosFixedPointNumbersExt 1248.8 ms ✓ Adapt → AdaptSparseArraysExt 1186.3 ms ✓ GPUArraysCore 826.1 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1455.5 ms ✓ FillArrays → FillArraysPDMatsExt 5252.4 ms ✓ PeriodicTable 2490.7 ms ✓ ChainRulesCore 2045.3 ms ✓ FilePathsBase 2531.2 ms ✓ BioSymbols 16573.4 ms ✓ SIMD 14109.5 ms ✓ StaticArrays 2840.9 ms ✓ RecipesBase 16572.8 ms ✓ Parsers 1396.2 ms ✓ Libffi_jll 1383.6 ms ✓ LZO_jll 1387.8 ms ✓ EarCut_jll 1406.2 ms ✓ Bzip2_jll 1394.9 ms ✓ OpenBLASConsistentFPCSR_jll 1356.3 ms ✓ isoband_jll 1431.5 ms ✓ XZ_jll 1422.7 ms ✓ Rmath_jll 1229.6 ms ✓ MicrosoftMPI_jll 1398.7 ms ✓ OpenSpecFun_jll 1228.1 ms ✓ Xorg_xtrans_jll 1395.5 ms ✓ Opus_jll 5048.4 ms ✓ IntelOpenMP_jll 1389.6 ms ✓ x265_jll 1367.9 ms ✓ libpng_jll 1408.3 ms ✓ CRlibm_jll 5284.4 ms ✓ oneTBB_jll 1515.9 ms ✓ Dierckx_jll 1500.5 ms ✓ Imath_jll 1421.6 ms ✓ Libmount_jll 1381.8 ms ✓ libfdk_aac_jll 1492.5 ms ✓ Libuuid_jll 1391.0 ms ✓ FriBidi_jll 1412.5 ms ✓ LERC_jll 1400.9 ms ✓ Xorg_libXau_jll 1398.8 ms ✓ Ogg_jll 1369.8 ms ✓ FFTW_jll 1384.8 ms ✓ LAME_jll 1426.5 ms ✓ Graphite2_jll 1442.0 ms ✓ libaec_jll 1770.8 ms ✓ x264_jll 1411.3 ms ✓ Xorg_libpciaccess_jll 1223.4 ms ✓ LLVMOpenMP_jll 1333.6 ms ✓ Libiconv_jll 1258.2 ms ✓ libaom_jll 1052.0 ms ✓ Xorg_libXdmcp_jll 1275.7 ms ✓ Giflib_jll 1228.1 ms ✓ Expat_jll 1116.5 ms ✓ JpegTurbo_jll 3796.6 ms ✓ MPItrampoline_jll 1183.4 ms ✓ ColorTypes → StyledStringsExt 7403.3 ms ✓ Colors 3666.1 ms ✓ ColorVectorSpace 4410.4 ms ✓ StatsBase 1633.8 ms ✓ StructArrays 901.5 ms ✓ StructUtils → StructUtilsTablesExt 1303.9 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 904.1 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 835.1 ms ✓ Distances → DistancesChainRulesCoreExt 2745.8 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 2560.5 ms ✓ FilePathsBase → FilePathsBaseTestExt 909.1 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1239.1 ms ✓ FilePaths 20576.9 ms ✓ Automa 3682.4 ms ✓ ArnoldiMethod 1328.9 ms ✓ StaticArrays → StaticArraysStatisticsExt 1357.0 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1316.5 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 5123.4 ms ✓ Rotations 1904.0 ms ✓ Adapt → AdaptStaticArraysExt 1391.7 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 13845.5 ms ✓ BioStructures 7050.7 ms ✓ JSON 20487.0 ms ✓ GeometryBasics 1391.6 ms ✓ FreeType2_jll 881.9 ms ✓ Isoband 1476.9 ms ✓ Rmath 4037.1 ms ✓ SpecialFunctions 955.3 ms ✓ CRlibm 8790.1 ms ✓ MKL_jll 1497.9 ms ✓ Dierckx 1525.4 ms ✓ OpenEXR_jll 1372.5 ms ✓ libvorbis_jll 1292.7 ms ✓ Pixman_jll 1421.0 ms ✓ XML2_jll 1420.6 ms ✓ GettextRuntime_jll 1432.6 ms ✓ Xorg_libxcb_jll 1395.3 ms ✓ Libtiff_jll 1398.4 ms ✓ libsixel_jll 5227.5 ms ✓ QOI 51266.3 ms ✓ TiffImages 1357.0 ms ✓ Animations 29796.9 ms ✓ ImageCore 8218.6 ms ✓ ColorSchemes 1341.3 ms ✓ PDMats → StatsBaseExt 1313.9 ms ✓ StructArrays → StructArraysSparseArraysExt 776.9 ms ✓ StructArrays → StructArraysLinearAlgebraExt 794.9 ms ✓ StructArrays → StructArraysAdaptExt 1571.0 ms ✓ StructArrays → StructArraysStaticArraysExt 4070.8 ms ✓ NearestNeighbors 9561.1 ms ✓ Graphs 1880.5 ms ✓ Rotations → RotationsRecipesBaseExt 8086.2 ms ✓ KernelAbstractions 4931.9 ms ✓ Interpolations 4676.3 ms ✓ ColorBrewer 3436.2 ms ✓ Packing 11791.3 ms ✓ GridLayoutBase 9834.9 ms ✓ MakieCore 6148.9 ms ✓ ShaderAbstractions 1735.3 ms ✓ FreeType 1573.7 ms ✓ Fontconfig_jll 3711.8 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2421.3 ms ✓ HypergeometricFunctions 1318.6 ms ✓ ColorVectorSpace → SpecialFunctionsExt 5058.6 ms ✓ IntervalArithmetic 6282.9 ms ✓ FFTW 5706.2 ms ✓ OpenEXR 1461.2 ms ✓ Hwloc_jll 1480.4 ms ✓ Glib_jll 1396.3 ms ✓ Xorg_libX11_jll 4469.1 ms ✓ ImageBase 6580.6 ms ✓ PNGFiles 11981.3 ms ✓ Sixel 9827.1 ms ✓ JpegTurbo 17300.4 ms ✓ PlotUtils 2128.9 ms ✓ AssigningSecondaryStructure 2942.1 ms ✓ KernelAbstractions → SparseArraysExt 2014.3 ms ✓ KernelAbstractions → LinearAlgebraExt 2154.6 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 3763.6 ms ✓ Interpolations → InterpolationsUnitfulExt 7953.2 ms ✓ FreeTypeAbstraction 2859.7 ms ✓ StatsFuns 1526.7 ms ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 1462.7 ms ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt 1311.3 ms ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 974.7 ms ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt 5146.0 ms ✓ MPICH_jll 4721.4 ms ✓ OpenMPI_jll 1361.5 ms ✓ Xorg_libXrender_jll 1398.5 ms ✓ Xorg_libXext_jll 5581.1 ms ✓ ImageAxes 13144.5 ms ✓ NNlib 28012.0 ms ✓ MathTeXEngine 3283.9 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1001.7 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 9094.7 ms ✓ Distributions 7505.4 ms ✓ ExactPredicates 5707.7 ms ✓ HDF5_jll 1585.3 ms ✓ Cairo_jll 1441.9 ms ✓ Libglvnd_jll 4146.5 ms ✓ ImageMetadata 2545.1 ms ✓ NNlib → NNlibSpecialFunctionsExt 12193.2 ms ✓ Backboner 2725.3 ms ✓ NNlib → NNlibFFTWExt 3604.5 ms ✓ Distributions → DistributionsTestExt 3044.7 ms ✓ Distributions → DistributionsChainRulesCoreExt 10797.4 ms ✓ DelaunayTriangulation 14301.8 ms ✓ HDF5 1452.1 ms ✓ HarfBuzz_jll 1508.5 ms ✓ libwebp_jll 8371.1 ms ✓ Netpbm 4132.4 ms ✓ KernelDensity 13533.7 ms ✓ ProteinChains 1708.8 ms ✓ libass_jll 9219.4 ms ✓ WebP 1594.4 ms ✓ FFMPEG_jll 5071.9 ms ✓ ImageIO 276565.7 ms ✓ Makie 71754.4 ms ✓ ProtPlot 275 dependencies successfully precompiled in 1270 seconds. 40 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 1274.3s ################################################################################ # Testing # Testing ProtPlot Status `/tmp/jl_Iz1hGe/Project.toml` [de9282ab] BioStructures v4.7.0 ⌃ [e9467ef8] GLMakie v0.12.0 [77b3afcc] ProtPlot v0.5.17 ⌃ [b8e8f2a5] ProteinChains v0.5.3 [8dfed614] Test v1.11.0 Status `/tmp/jl_Iz1hGe/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Downloading file from PDB: 1ZAK [ Info: Downloading file from PDB: 1M4X [ Info: File exists: 1M4X [ Info: Downloading file from PDB: 1ASS [ Info: File exists: 1ASS [ Info: File exists: 1ASS ProtPlot.jl: Error During Test at /home/pkgeval/.julia/packages/ProtPlot/XxA3C/test/runtests.jl:23 Test threw exception Expression: atomplot(Frames(pdb"1ASS"A)) isa Makie.FigureAxisPlot UndefVarError: `Frames` not defined in `Main` Suggestion: check for spelling errors or missing imports. Hint: a global variable of this name also exists in Backboner. Stacktrace: [1] top-level scope @ ~/.julia/packages/ProtPlot/XxA3C/test/runtests.jl:9 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/ProtPlot/XxA3C/test/runtests.jl:23 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:750 [inlined] [ Info: File exists: 1ASS ProtPlot.jl: Error During Test at /home/pkgeval/.julia/packages/ProtPlot/XxA3C/test/runtests.jl:25 Test threw exception Expression: ramachandran(pdb"1ASS") isa Makie.FigureAxisPlot MethodError: no method matching get_torsion_angles(::ProteinChain{Float64}) The function `get_torsion_angles` exists, but no method is defined for this combination of argument types. Closest candidates are: get_torsion_angles(!Matched::Backboner.Backbone) @ Backboner ~/.julia/packages/Backboner/gIxzM/src/bonds.jl:55 get_torsion_angles(!Matched::Backboner.ChainedBonds) @ Backboner ~/.julia/packages/Backboner/gIxzM/src/bonds.jl:88 Stacktrace: [1] convert_arguments(::Type{Plot{ProtPlot.ramachandran}}, chain::ProteinChain{Float64}) @ ProtPlot ~/.julia/packages/ProtPlot/XxA3C/src/misc/ramachandran.jl:16 [2] convert_arguments(::Type{Plot{ProtPlot.ramachandran}}, chains::ProteinStructure{Float64}) @ ProtPlot ~/.julia/packages/ProtPlot/XxA3C/src/misc/ramachandran.jl:27 [3] conversion_pipeline(P::Type{Plot{ProtPlot.ramachandran}}, used_attrs::Tuple{}, args::Tuple{ProteinStructure{Float64}}, kw_obs::Observable{Vector{Pair{Symbol, Any}}}, args_obs::Tuple{Observable{Any}}, user_attributes::Dict{Symbol, Any}, deregister::Vector{Observables.ObserverFunction}, recursion::Int64) @ Makie ~/.julia/packages/Makie/UjJJY/src/interfaces.jl:222 [4] conversion_pipeline(P::Type{Plot{ProtPlot.ramachandran}}, used_attrs::Tuple{}, args::Tuple{ProteinStructure{Float64}}, kw_obs::Observable{Vector{Pair{Symbol, Any}}}, args_obs::Tuple{Observable{Any}}, user_attributes::Dict{Symbol, Any}, deregister::Vector{Observables.ObserverFunction}) @ Makie ~/.julia/packages/Makie/UjJJY/src/interfaces.jl:213 [5] (Plot{ProtPlot.ramachandran})(user_args::Tuple{ProteinStructure{Float64}}, user_attributes::Dict{Symbol, Any}) @ Makie ~/.julia/packages/Makie/UjJJY/src/interfaces.jl:273 [6] _create_plot(F::Function, attributes::Dict{Symbol, Any}, args::ProteinStructure{Float64}) @ Makie ~/.julia/packages/Makie/UjJJY/src/figureplotting.jl:316 [7] ramachandran(args::ProteinStructure{Float64}) @ ProtPlot ~/.julia/packages/MakieCore/dw3iH/src/recipes.jl:192 [8] top-level scope @ ~/.julia/packages/ProtPlot/XxA3C/test/runtests.jl:9 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [10] macro expansion @ ~/.julia/packages/ProtPlot/XxA3C/test/runtests.jl:25 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:750 [inlined] [ Info: Downloading file from PDB: 1M4X Test Summary: | Pass Error Total Time ProtPlot.jl | 7 2 9 3m21.0s RNG of the outermost testset: Random.Xoshiro(0xd029af22a8141000, 0xb3c1ea7e0894b82e, 0xf1bc6affb672befc, 0x9761a4757b1f3a44, 0xc7c904d1afea8b52) ERROR: LoadError: Some tests did not pass: 7 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ProtPlot/XxA3C/test/runtests.jl:8 Testing failed after 450.65s ERROR: LoadError: Package ProtPlot errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1808.23s: package tests unexpectedly errored