Package evaluation to test PhyloGaussianBeliefProp on Julia 1.14.0-DEV.36 (e2f3178d9b*) started at 2025-11-06T23:15:02.528 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.64s ################################################################################ # Installation # Installing PhyloGaussianBeliefProp... Resolving package versions... Installed ChunkCodecLibZstd ─────────── v1.0.0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed DiffResults ───────────────── v1.1.0 Installed MacroTools ────────────────── v0.5.16 Installed FilePathsBase ─────────────── v0.9.24 Installed DataStructures ────────────── v0.18.22 Installed GLM ───────────────────────── v1.9.0 Installed ForwardDiff ───────────────── v0.10.39 Installed FillArrays ────────────────── v1.15.0 Installed Adapt ─────────────────────── v4.4.0 Installed InlineStrings ─────────────── v1.4.5 Installed HypergeometricFunctions ───── v0.3.28 Installed ConstructionBase ──────────── v1.6.0 Installed StatsModels ───────────────── v0.7.7 Installed JLD2 ──────────────────────── v0.6.2 Installed MetaGraphsNext ────────────── v0.7.4 Installed StringViews ───────────────── v1.3.5 Installed CodecZlib ─────────────────── v0.7.8 Installed ShiftedArrays ─────────────── v2.0.0 Installed ArnoldiMethod ─────────────── v0.4.0 Installed AliasTables ───────────────── v1.1.3 Installed TranscodingStreams ────────── v0.11.3 Installed StatsBase ─────────────────── v0.34.7 Installed Functors ──────────────────── v0.4.12 Installed Optim ─────────────────────── v1.13.2 Installed ArrayInterface ────────────── v7.22.0 Installed OrderedCollections ────────── v1.8.1 Installed HashArrayMappedTries ──────── v0.2.0 Installed Compat ────────────────────── v4.18.1 Installed Combinatorics ─────────────── v1.0.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed InvertedIndices ───────────── v1.3.1 Installed Statistics ────────────────── v1.11.1 Installed PreallocationTools ────────── v0.4.34 Installed DataAPI ───────────────────── v1.16.0 Installed SIMD ──────────────────────── v3.7.2 Installed PositiveFactorizations ────── v0.2.4 Installed StatsAPI ──────────────────── v1.7.1 Installed CEnum ─────────────────────── v0.5.0 Installed DataValueInterfaces ───────── v1.0.0 Installed CommonSubexpressions ──────── v0.3.1 Installed SentinelArrays ────────────── v1.4.8 Installed PrecompileTools ───────────── v1.3.3 Installed FileIO ────────────────────── v1.17.1 Installed Twiddle ───────────────────── v1.1.2 Installed BioSymbols ────────────────── v5.2.0 Installed StaticArraysCore ──────────── v1.4.4 Installed IrrationalConstants ───────── v0.2.6 Installed StaticArrays ──────────────── v1.9.15 Installed StringManipulation ────────── v0.4.1 Installed QuadGK ────────────────────── v2.11.2 Installed NaNMath ───────────────────── v1.1.3 Installed Requires ──────────────────── v1.3.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed SimpleTraits ──────────────── v0.9.5 Installed ChunkCodecLibZlib ─────────── v1.0.0 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed Parsers ───────────────────── v2.8.3 Installed FiniteDiff ────────────────── v2.29.0 Installed Rmath ─────────────────────── v0.9.0 Installed PrettyTables ──────────────── v3.1.0 Installed ScopedValues ──────────────── v1.5.0 Installed Parameters ────────────────── v0.12.3 Installed Distributions ─────────────── v0.25.122 Installed PhyloNetworks ─────────────── v0.16.4 Installed BioGenerics ───────────────── v0.1.5 Installed StatsFuns ─────────────────── v1.5.2 Installed PhyloGaussianBeliefProp ───── v0.0.1 Installed Tables ────────────────────── v1.12.1 Installed CSV ───────────────────────── v0.10.15 Installed PtrArrays ─────────────────── v1.3.0 Installed EnumX ─────────────────────── v1.0.5 Installed FASTX ─────────────────────── v2.1.7 Installed NLSolversBase ─────────────── v7.10.0 Installed Reexport ──────────────────── v1.2.2 Installed Setfield ──────────────────── v1.1.2 Installed Missings ──────────────────── v1.2.0 Installed SpecialFunctions ──────────── v2.6.1 Installed WeakRefStrings ────────────── v1.4.2 Installed Preferences ───────────────── v1.5.0 Installed DataFrames ────────────────── v1.8.1 Installed JLLWrappers ───────────────── v1.7.1 Installed PooledArrays ──────────────── v1.4.3 Installed LineSearches ──────────────── v7.4.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed TableTraits ───────────────── v1.0.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed Automa ────────────────────── v1.1.0 Installed ChunkCodecCore ────────────── v1.0.0 Installed PDMats ────────────────────── v0.11.36 Installed NLopt ─────────────────────── v1.2.1 Installed Crayons ───────────────────── v4.1.1 Installed Graphs ────────────────────── v1.13.1 Installed UnPack ────────────────────── v1.0.2 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed ADTypes ───────────────────── v1.18.0 Installed BioSequences ──────────────── v3.5.0 Installed WorkerUtilities ───────────── v1.6.1 Installed DocStringExtensions ───────── v0.9.5 Installed Inflate ───────────────────── v0.1.5 Installed DifferentiationInterface ──── v0.7.10 Installing 3 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact NLopt 322.7 KiB Updating `~/.julia/environments/v1.14/Project.toml` [e3084505] + PhyloGaussianBeliefProp v0.0.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [0b6fb165] + ChunkCodecCore v1.0.0 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.10 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [c2308a5c] + FASTX v2.1.7 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 ⌅ [f6369f11] + ForwardDiff v0.10.39 ⌅ [d9f16b24] + Functors v0.4.12 [38e38edf] + GLM v1.9.0 [86223c79] + Graphs v1.13.1 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.2 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [fa8bd995] + MetaGraphsNext v0.7.4 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [e3084505] + PhyloGaussianBeliefProp v0.0.1 ⌅ [33ad39ac] + PhyloNetworks v0.16.4 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [fdea26ae] + SIMD v3.7.2 [7e506255] + ScopedValues v1.5.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.5 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 10.68s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5415.9 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 2003.9 ms ✓ Crayons 4503.0 ms ✓ MacroTools 1770.4 ms ✓ InlineStrings 841.7 ms ✓ Reexport 1029.7 ms ✓ PositiveFactorizations 943.7 ms ✓ DataAPI 1236.9 ms ✓ Statistics 1215.5 ms ✓ ConstructionBase 2359.7 ms ✓ IrrationalConstants 940.8 ms ✓ UnPack 831.7 ms ✓ DataValueInterfaces 1110.3 ms ✓ StaticArraysCore 910.3 ms ✓ StatsAPI 1312.8 ms ✓ Requires 1388.4 ms ✓ OrderedCollections 928.4 ms ✓ InvertedIndices 1001.0 ms ✓ HashArrayMappedTries 1477.6 ms ✓ ADTypes 908.8 ms ✓ Twiddle 975.9 ms ✓ ShiftedArrays 1229.4 ms ✓ DocStringExtensions 904.9 ms ✓ CEnum 1678.4 ms ✓ Functors 2457.7 ms ✓ Combinatorics 973.0 ms ✓ EnumX 1221.4 ms ✓ StringViews 1097.3 ms ✓ WorkerUtilities 1088.2 ms ✓ Inflate 2476.9 ms ✓ FillArrays 956.5 ms ✓ PtrArrays 1423.0 ms ✓ TranscodingStreams 872.7 ms ✓ IteratorInterfaceExtensions 918.8 ms ✓ LaTeXStrings 1099.5 ms ✓ ChunkCodecCore 1411.1 ms ✓ SuiteSparse 1181.4 ms ✓ NaNMath 3265.2 ms ✓ SentinelArrays 1344.1 ms ✓ Compat 1308.3 ms ✓ Preferences 1936.0 ms ✓ CommonSubexpressions 3905.8 ms ✓ SimpleTraits 1102.6 ms ✓ Missings 1200.9 ms ✓ PooledArrays 1666.0 ms ✓ Statistics → SparseArraysExt 845.7 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 993.8 ms ✓ DiffResults 1105.9 ms ✓ Adapt 10310.6 ms ✓ FileIO 1080.8 ms ✓ Parameters 963.8 ms ✓ ScopedValues 2162.5 ms ✓ DifferentiationInterface 907.9 ms ✓ ADTypes → ADTypesConstructionBaseExt 1597.1 ms ✓ LogExpFunctions 1694.0 ms ✓ FillArrays → FillArraysSparseArraysExt 1329.6 ms ✓ FillArrays → FillArraysStatisticsExt 1170.8 ms ✓ AliasTables 1140.9 ms ✓ BioGenerics 1072.6 ms ✓ CodecZlib 962.9 ms ✓ TableTraits 1113.6 ms ✓ ChunkCodecLibZlib 1421.8 ms ✓ ChunkCodecLibZstd 1978.9 ms ✓ PDMats 939.9 ms ✓ Compat → CompatLinearAlgebraExt 1406.3 ms ✓ JLLWrappers 1083.3 ms ✓ PrecompileTools 3560.5 ms ✓ Setfield 1304.6 ms ✓ ArrayInterface 1310.2 ms ✓ Adapt → AdaptSparseArraysExt 1453.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1952.4 ms ✓ Tables 1605.3 ms ✓ FillArrays → FillArraysPDMatsExt 2306.0 ms ✓ FilePathsBase 4208.6 ms ✓ DataStructures 1514.0 ms ✓ NLopt_jll 1515.4 ms ✓ Rmath_jll 1639.5 ms ✓ OpenSpecFun_jll 2904.1 ms ✓ BioSymbols 15208.4 ms ✓ StaticArrays 3544.9 ms ✓ StringManipulation 19142.9 ms ✓ SIMD 18178.6 ms ✓ Parsers 49844.3 ms ✓ JLD2 929.1 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1287.9 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1771.3 ms ✓ PreallocationTools 1030.5 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1667.0 ms ✓ SortingAlgorithms 2971.5 ms ✓ QuadGK 2010.6 ms ✓ NLopt 1516.8 ms ✓ Rmath 5443.3 ms ✓ SpecialFunctions 10344.2 ms ✓ BioSequences 1391.6 ms ✓ StaticArrays → StaticArraysStatisticsExt 4275.5 ms ✓ ArnoldiMethod 1481.2 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1592.5 ms ✓ Adapt → AdaptStaticArraysExt 1904.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 42200.1 ms ✓ PrettyTables 24491.8 ms ✓ Automa 1052.6 ms ✓ InlineStrings → ParsersExt 7396.4 ms ✓ JLD2 → UnPackExt 1751.0 ms ✓ FiniteDiff 5558.4 ms ✓ StatsBase 2627.5 ms ✓ HypergeometricFunctions 1365.8 ms ✓ DiffRules 10393.3 ms ✓ Graphs 98434.9 ms ✓ DataFrames 24877.3 ms ✓ FASTX 2756.8 ms ✓ WeakRefStrings 1568.3 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1435.7 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1022.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2077.5 ms ✓ PDMats → StatsBaseExt 3065.8 ms ✓ StatsFuns 8520.8 ms ✓ ForwardDiff 10730.1 ms ✓ MetaGraphsNext 2720.0 ms ✓ FASTX → BioSequencesExt 32035.6 ms ✓ CSV 6061.7 ms ✓ StatsModels 10938.3 ms ✓ Distributions 3432.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 2646.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1658.5 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 6260.0 ms ✓ GLM 3730.5 ms ✓ NLSolversBase 28161.3 ms ✓ PhyloNetworks 8081.9 ms ✓ LineSearches 12261.8 ms ✓ Optim 33291.2 ms ✓ PhyloGaussianBeliefProp 129 dependencies successfully precompiled in 673 seconds. 38 already precompiled. Precompilation completed after 685.56s ################################################################################ # Testing # Testing PhyloGaussianBeliefProp Status `/tmp/jl_Imkkwd/Project.toml` [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.122 ⌅ [f6369f11] ForwardDiff v0.10.39 [86223c79] Graphs v1.13.1 [fa8bd995] MetaGraphsNext v0.7.4 [429524aa] Optim v1.13.2 [90014a1f] PDMats v0.11.36 [e3084505] PhyloGaussianBeliefProp v0.0.1 ⌅ [33ad39ac] PhyloNetworks v0.16.4 [d236fae5] PreallocationTools v0.4.34 [90137ffa] StaticArrays v1.9.15 [4c63d2b9] StatsFuns v1.5.2 [bd369af6] Tables v1.12.1 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Imkkwd/Manifest.toml` [47edcb42] ADTypes v1.18.0 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [67c07d97] Automa v1.1.0 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols v5.2.0 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [0b6fb165] ChunkCodecCore v1.0.0 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.10 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [c2308a5c] FASTX v2.1.7 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 ⌅ [f6369f11] ForwardDiff v0.10.39 ⌅ [d9f16b24] Functors v0.4.12 [38e38edf] GLM v1.9.0 [86223c79] Graphs v1.13.1 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.2 [692b3bcd] JLLWrappers v1.7.1 [b964fa9f] LaTeXStrings v1.4.0 [d3d80556] LineSearches v7.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [fa8bd995] MetaGraphsNext v0.7.4 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.10.0 [76087f3c] NLopt v1.2.1 [77ba4419] NaNMath v1.1.3 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [e3084505] PhyloGaussianBeliefProp v0.0.1 ⌅ [33ad39ac] PhyloNetworks v0.16.4 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] 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Testing Running tests... degenerate hybrid: complex case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:56 Expression: [PGBP.nodelabels(be) for be = b] == beliefnodelabels Evaluated: StaticArraysCore.SArray{S, Int8, 1} where S<:Tuple[[3, 2], [4, 2, 1], [5, 4, 2], [6, 5], [8, 6], [7, 6], [9, 4], [2], [4, 2], [4], [5], [6], [6]] == [[6, 5], [7, 6], [8, 6], [5, 4, 2], [4, 2, 1], [3, 2], [9, 4], [6], [6], [5], [4, 2], [2], [4]] Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:56 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] degenerate hybrid: complex case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:57 Expression: PGBP.inscope(b[5]) == trues(2, 3) Evaluated: Bool[0 1; 0 1] == Bool[1 1 1; 1 1 1] Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:57 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] degenerate hybrid: complex case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:58 Test threw exception Expression: isempty(PGBP.scopeindex([5], b[1])) some label is not in the belief's node labels Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] scopeindex(node_labels::Vector{Int64}, belief::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{2, Int8}, StaticArraysCore.MMatrix{2, 2, Float64, 4}, StaticArraysCore.MVector{2, Float64}, Symbol}) @ PhyloGaussianBeliefProp ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/beliefs.jl:170 [3] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [7] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:58 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:750 [inlined] degenerate hybrid: complex case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:59 Test threw exception Expression: PGBP.scopeindex([6], b[1]) == [1, 2] some label is not in the belief's node labels Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] scopeindex(node_labels::Vector{Int64}, belief::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{2, Int8}, StaticArraysCore.MMatrix{2, 2, Float64, 4}, StaticArraysCore.MVector{2, Float64}, Symbol}) @ PhyloGaussianBeliefProp ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/beliefs.jl:170 [3] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [7] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:59 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:750 [inlined] degenerate hybrid: complex case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:60 Expression: PGBP.scopeindex([2], b[1]) Expected: ErrorException No exception thrown Stacktrace: [1] do_test_throws(result::Test.ExecutionResult, orig_expr::Any, extype::Any) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:910 [2] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [4] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [6] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:60 [inlined] degenerate hybrid: complex case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:62 Expression: [PGBP.nodelabels(be) for be = b] == beliefnodelabels Evaluated: StaticArraysCore.SArray{S, Int8, 1} where S<:Tuple[[3, 2], [4, 2, 1], [5, 4, 2], [6, 5], [8, 6], [7, 6], [9, 4], [2], [4, 2], [4], [5], [6], [6]] == [[6, 5], [7, 6], [8, 6], [5, 4, 2], [4, 2, 1], [3, 2], [9, 4], [6], [6], [5], [4, 2], [2], [4]] Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:62 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] degenerate hybrid: complex case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:63 Expression: PGBP.inscope(b[5]) == [true true false; true true false] Evaluated: Bool[0 1; 0 1] == Bool[1 1 0; 1 1 0] Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:38 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:63 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:79 Test threw exception Expression: (b[1]).J ≈ (m.J / (net.edge[4]).length) .* [1 -1; -1 1] DimensionMismatch: Sizes (Size(1, 1), (2, 2)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MMatrix{1, 1, Float64, 1}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/DsPgf/src/linalg.jl:18 [inlined] [7] norm_x_minus_y(x::StaticArraysCore.MMatrix{1, 1, Float64, 1}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:2006 [8] isapprox(x::StaticArraysCore.MMatrix{1, 1, Float64, 1}, y::Matrix{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1996 [9] isapprox(x::StaticArraysCore.MMatrix{1, 1, Float64, 1}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1992 [10] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:375 [11] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [13] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:79 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:750 [inlined] non-degenerate hybrid: simpler case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:80 Expression: (b[1]).h == [0, 0] Evaluated: [-5.0] == [0, 0] Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:80 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] non-degenerate hybrid: simpler case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:81 Expression: (b[1]).g[1] ≈ -(log((2π) * (net.edge[4]).length * m.σ2)) / 2 Evaluated: -2.6142195769876224 ≈ -1.0100993116016501 Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:81 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:83 Test threw exception Expression: (b[2]).J ≈ bp .* [1;;] DimensionMismatch: Sizes (Size(2, 2), (1, 1)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MMatrix{2, 2, Float64, 4}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/DsPgf/src/linalg.jl:18 [inlined] [7] norm_x_minus_y(x::StaticArraysCore.MMatrix{2, 2, Float64, 4}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:2006 [8] isapprox(x::StaticArraysCore.MMatrix{2, 2, Float64, 4}, y::Matrix{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1996 [9] isapprox(x::StaticArraysCore.MMatrix{2, 2, Float64, 4}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1992 [10] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:375 [11] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [13] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:83 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:750 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:84 Test threw exception Expression: (b[2]).h ≈ bp * [tbl_y.y[3]] DimensionMismatch: Sizes (Size(2,), (1,)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MVector{2, Float64}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/DsPgf/src/linalg.jl:18 [inlined] [7] norm_x_minus_y(x::StaticArraysCore.MVector{2, Float64}, y::Vector{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:2006 [8] isapprox(x::StaticArraysCore.MVector{2, Float64}, y::Vector{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1996 [9] isapprox(x::StaticArraysCore.MVector{2, Float64}, y::Vector{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1992 [10] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:375 [11] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [13] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:84 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:750 [inlined] non-degenerate hybrid: simpler case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:85 Expression: (b[2]).g[1] ≈ -((log((2π) / bp) + bp * tbl_y.y[3] ^ 2)) / 2 Evaluated: -8.934450656689318 ≈ -1.5155121234846454 Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:85 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:87 Test threw exception Expression: (b[3]).J ≈ bp .* [1;;] DimensionMismatch: Sizes (Size(3, 3), (1, 1)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MMatrix{3, 3, Float64, 9}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/DsPgf/src/linalg.jl:18 [inlined] [7] norm_x_minus_y(x::StaticArraysCore.MMatrix{3, 3, Float64, 9}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:2006 [8] isapprox(x::StaticArraysCore.MMatrix{3, 3, Float64, 9}, y::Matrix{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1996 [9] isapprox(x::StaticArraysCore.MMatrix{3, 3, Float64, 9}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1992 [10] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:375 [11] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [13] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:87 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:750 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:88 Test threw exception Expression: (b[3]).h ≈ bp * [tbl_y.y[2]] DimensionMismatch: Sizes (Size(3,), (1,)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MVector{3, Float64}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/DsPgf/src/linalg.jl:18 [inlined] [7] norm_x_minus_y(x::StaticArraysCore.MVector{3, Float64}, y::Vector{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:2006 [8] isapprox(x::StaticArraysCore.MVector{3, Float64}, y::Vector{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1996 [9] isapprox(x::StaticArraysCore.MVector{3, Float64}, y::Vector{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1992 [10] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:375 [11] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [13] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:88 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:750 [inlined] non-degenerate hybrid: simpler case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:89 Expression: (b[3]).g[1] ≈ -((log((2π) / bp) + bp * tbl_y.y[2] ^ 2)) / 2 Evaluated: -1.218905932623556 ≈ -1.4680121234846455 Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:89 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:91 Test threw exception Expression: (b[4]).J ≈ bp .* [1 -0.9 -0.1; -0.9 0.81 0.09; -0.1 0.09 0.01] DimensionMismatch: Sizes (Size(2, 2), (3, 3)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MMatrix{2, 2, Float64, 4}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/DsPgf/src/linalg.jl:18 [inlined] [7] norm_x_minus_y(x::StaticArraysCore.MMatrix{2, 2, Float64, 4}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:2006 [8] isapprox(x::StaticArraysCore.MMatrix{2, 2, Float64, 4}, y::Matrix{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1996 [9] isapprox(x::StaticArraysCore.MMatrix{2, 2, Float64, 4}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1992 [10] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:375 [11] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [13] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:91 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:750 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:92 Test threw exception Expression: (b[4]).h ≈ [0, 0, 0] DimensionMismatch: Sizes (Size(2,), (3,)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MVector{2, Float64}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/DsPgf/src/linalg.jl:18 [inlined] [7] norm_x_minus_y(x::StaticArraysCore.MVector{2, Float64}, y::Vector{Int64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:2006 [8] isapprox(x::StaticArraysCore.MVector{2, Float64}, y::Vector{Int64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1996 [9] isapprox(x::StaticArraysCore.MVector{2, Float64}, y::Vector{Int64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1992 [10] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:375 [11] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [13] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:92 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:750 [inlined] non-degenerate hybrid: simpler case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:93 Expression: (b[4]).g[1] ≈ -(log((2π) / bp)) / 2 Evaluated: -1.0100993116016501 ≈ -1.218905932623556 Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:93 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:96 Test threw exception Expression: (b[5]).J ≈ [bp[1] 0; 0 bp[2]] DimensionMismatch: Sizes (Size(1, 1), (2, 2)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MMatrix{1, 1, Float64, 1}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/DsPgf/src/linalg.jl:18 [inlined] [7] norm_x_minus_y(x::StaticArraysCore.MMatrix{1, 1, Float64, 1}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:2006 [8] isapprox(x::StaticArraysCore.MMatrix{1, 1, Float64, 1}, y::Matrix{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1996 [9] isapprox(x::StaticArraysCore.MMatrix{1, 1, Float64, 1}, y::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1992 [10] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:375 [11] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [13] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:96 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:750 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:97 Test threw exception Expression: (b[5]).h ≈ bp .* [m.μ, m.μ] DimensionMismatch: Sizes (Size(1,), (2,)) of input arrays do not match Stacktrace: [1] _throw_size_mismatch(::StaticArraysCore.MVector{1, Float64}, ::Vararg{Any}) @ StaticArrays ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:117 [2] same_size @ ~/.julia/packages/StaticArrays/DsPgf/src/traits.jl:111 [inlined] [3] macro expansion @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:76 [inlined] [4] _map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:42 [inlined] [5] map @ ~/.julia/packages/StaticArrays/DsPgf/src/mapreduce.jl:33 [inlined] [6] - @ ~/.julia/packages/StaticArrays/DsPgf/src/linalg.jl:18 [inlined] [7] norm_x_minus_y(x::StaticArraysCore.MVector{1, Float64}, y::Vector{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:2006 [8] isapprox(x::StaticArraysCore.MVector{1, Float64}, y::Vector{Float64}; atol::Int64, rtol::Float64, nans::Bool, norm::typeof(norm)) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1996 [9] isapprox(x::StaticArraysCore.MVector{1, Float64}, y::Vector{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.14/LinearAlgebra/src/generic.jl:1992 [10] eval_test_comparison(comparison::Expr, quoted::Expr, source::LineNumberNode, negate::Bool) @ Test /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:375 [11] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [12] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [13] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:97 [inlined] [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:750 [inlined] non-degenerate hybrid: simpler case: Test Failed at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:98 Expression: (b[5]).g[1] ≈ -(sum(log.((2π) ./ bp) .+ bp .* m.μ ^ 2)) / 2 Evaluated: -1.4680121234846455 ≈ -8.934450656689318 Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:98 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] non-degenerate hybrid: simpler case: Error During Test at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:67 Got exception outside of a @test MethodError: no method matching isless(::Int64, ::Nothing) The function `isless` exists, but no method is defined for this combination of argument types. Closest candidates are: isless(!Matched::Missing, ::Any) @ Base missing.jl:87 isless(::Integer, !Matched::ForwardDiff.Dual{Ty}) where Ty @ ForwardDiff ~/.julia/packages/ForwardDiff/X74OO/src/dual.jl:160 isless(::Real, !Matched::ForwardDiff.Dual{Ty}) where Ty @ ForwardDiff ~/.julia/packages/ForwardDiff/X74OO/src/dual.jl:160 ... Stacktrace: [1] lt(o::Base.Order.ForwardOrdering, a::Int64, b::Nothing) @ Base.Order ./ordering.jl:118 [2] issorted(itr::StaticArraysCore.SizedVector{2, Union{Nothing, Int64}, Vector{Union{Nothing, Int64}}}, order::Base.Order.ForwardOrdering) @ Base.Sort ./sort.jl:57 [3] #issorted#1 @ ./sort.jl:95 [inlined] [4] issorted @ ./sort.jl:88 [inlined] [5] scopeindex(subset_labels::StaticArraysCore.SVector{2, Int8}, subset_inscope::BitMatrix, belief_labels::StaticArraysCore.SVector{2, Int8}, belief_inscope::BitMatrix) @ PhyloGaussianBeliefProp ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/beliefs.jl:204 [6] scopeindex(sep::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{2, Int8}, StaticArraysCore.MMatrix{2, 2, Float64, 4}, StaticArraysCore.MVector{2, Float64}, Tuple{Symbol, Symbol}}, clu::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{2, Int8}, StaticArraysCore.MMatrix{1, 1, Float64, 1}, StaticArraysCore.MVector{1, Float64}, Symbol}) @ PhyloGaussianBeliefProp ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/beliefs.jl:199 [7] propagate_belief!(cluster_to::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{2, Int8}, StaticArraysCore.MMatrix{1, 1, Float64, 1}, StaticArraysCore.MVector{1, Float64}, Symbol}, sepset::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{2, Int8}, StaticArraysCore.MMatrix{2, 2, Float64, 4}, StaticArraysCore.MVector{2, Float64}, Tuple{Symbol, Symbol}}, cluster_from::PhyloGaussianBeliefProp.Belief{Float64, StaticArraysCore.SVector{3, Int8}, StaticArraysCore.MMatrix{3, 3, Float64, 9}, StaticArraysCore.MVector{3, Float64}, Symbol}, residual::PhyloGaussianBeliefProp.MessageResidual{Float64, StaticArraysCore.MMatrix{2, 2, Float64, 4}, StaticArraysCore.MVector{2, Float64}}) @ PhyloGaussianBeliefProp ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/src/beliefupdates.jl:212 [8] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:3 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [10] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:68 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [12] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/test_canonicalform.jl:102 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/runtests.jl:14 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [16] macro expansion @ ~/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/runtests.jl:16 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:489 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [21] _start() @ Base ./client.jl:577 Test Summary: | Pass Fail Error Total Time PhyloGaussianBeliefProp.jl | 555 11 12 578 14m10.7s cluster graphs | 42 42 1m27.8s evolutionary models parameters | 24 24 15.8s evolutionary models likelihood | 13 13 7m18.3s canonical form | 11 11 12 34 31.0s basics | 11 11 4.2s degenerate hybrid: complex case | 5 2 7 14.0s non-degenerate hybrid: simpler case | 6 10 16 12.7s calibration | 43 43 3m26.5s exact tree calibration for the BM | 411 411 13.5s exact network calibration for the BM | 11 11 51.8s RNG of the outermost testset: Random.Xoshiro(0x1c3000b1214677ec, 0xcaa1153e31c16e39, 0xb02645f9c3676e83, 0x249d34a1796bd374, 0xed1f0eb6d982b352) ERROR: LoadError: Some tests did not pass: 555 passed, 11 failed, 12 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PhyloGaussianBeliefProp/DVSga/test/runtests.jl:13 Testing failed after 923.17s ERROR: LoadError: Package PhyloGaussianBeliefProp errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1661.79s: package tests unexpectedly errored