Package evaluation to test PhyNEST on Julia 1.14.0-DEV.36 (e2f3178d9b*) started at 2025-11-07T01:56:09.603 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.39s ################################################################################ # Installation # Installing PhyNEST... Resolving package versions... Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed Libuuid_jll ───────────────── v2.41.2+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed InlineStrings ─────────────── v1.4.5 Installed Functors ──────────────────── v0.3.0 Installed Optim ─────────────────────── v1.13.2 Installed Xorg_libXinerama_jll ──────── v1.1.6+0 Installed OrderedCollections ────────── v1.8.1 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed SentinelArrays ────────────── v1.4.8 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed libsass_jll ───────────────── v3.6.6+0 Installed FileIO ────────────────────── v1.17.1 Installed Wayland_protocols_jll ─────── v1.44.0+0 Installed QuadGK ────────────────────── v2.11.2 Installed NaNMath ───────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Graphics ──────────────────── v1.1.3 Installed Tables ────────────────────── v1.12.1 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed EnumX ─────────────────────── v1.0.5 Installed LZO_jll ───────────────────── v2.10.3+0 Installed Reexport ──────────────────── v1.2.2 Installed LERC_jll ──────────────────── v4.0.1+0 Installed NLSolversBase ─────────────── v7.10.0 Installed Missings ──────────────────── v1.2.0 Installed Preferences ───────────────── v1.5.0 Installed Librsvg_jll ───────────────── v2.54.7+0 Installed TableTraits ───────────────── v1.0.1 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed UnPack ────────────────────── v1.0.2 Installed ADTypes ───────────────────── v1.18.0 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed OpenSSH_jll ───────────────── v10.2.1+0 Installed DiffResults ───────────────── v1.1.0 Installed MacroTools ────────────────── v0.5.16 Installed Sass ──────────────────────── v0.2.0 Installed DataStructures ────────────── v0.18.22 Installed FillArrays ────────────────── v1.15.0 Installed AbstractTrees ─────────────── v0.4.5 Installed DelimitedFiles ────────────── v1.9.1 Installed CodecZlib ─────────────────── v0.7.8 Installed Observables ───────────────── v0.5.5 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed StatsBase ─────────────────── v0.33.21 Installed Xorg_libXdamage_jll ───────── v1.1.6+0 Installed Cairo ─────────────────────── v1.1.1 Installed MethodAnalysis ────────────── v1.0.0 Installed RoundingIntegers ──────────── v1.1.0 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed ArrayInterface ────────────── v7.22.0 Installed CEnum ─────────────────────── v0.5.0 Installed DataValueInterfaces ───────── v1.0.0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed IrrationalConstants ───────── v0.2.6 Installed Libffi_jll ────────────────── v3.4.7+0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed libpng_jll ────────────────── v1.6.50+0 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed CommonSubexpressions ──────── v0.3.1 Installed BitFlags ──────────────────── v0.1.9 Installed IOCapture ─────────────────── v0.2.5 Installed Scratch ───────────────────── v1.3.0 Installed Setfield ──────────────────── v1.1.2 Installed BenchmarkTools ────────────── v1.6.3 Installed PooledArrays ──────────────── v1.4.3 Installed PDMats ────────────────────── v0.11.35 Installed GTK4_jll ──────────────────── v4.18.6+0 Installed FASTX ─────────────────────── v2.1.7 Installed Graphene_jll ──────────────── v1.10.8+0 Installed LeftChildRightSiblingTrees ── v0.2.1 Installed WorkerUtilities ───────────── v1.6.1 Installed DocStringExtensions ───────── v0.9.5 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed adwaita_icon_theme_jll ────── v43.0.1+0 Installed BioSequences ──────────────── v3.5.0 Installed ForwardDiff ───────────────── v1.2.2 Installed DifferentiationInterface ──── v0.7.10 Installed AliasTables ───────────────── v1.1.3 Installed ShiftedArrays ─────────────── v2.0.0 Installed Combinatorics ─────────────── v1.0.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed StringViews ───────────────── v1.3.5 Installed StatsModels ───────────────── v0.6.33 Installed DataAPI ───────────────────── v1.16.0 Installed SIMD ──────────────────────── v3.7.2 Installed Git_LFS_jll ───────────────── v3.7.0+0 Installed InvertedIndices ───────────── v1.3.1 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed MathOptInterface ──────────── v1.46.0 Installed Wayland_jll ───────────────── v1.24.0+0 Installed StaticArraysCore ──────────── v1.4.4 Installed Xorg_libxkbfile_jll ───────── v1.1.3+0 Installed Colors ────────────────────── v0.13.1 Installed StaticArrays ──────────────── v1.9.15 Installed Documenter ────────────────── v0.27.25 Installed Twiddle ───────────────────── v1.1.2 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed GtkObservables ────────────── v2.2.1 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed Glib_jll ──────────────────── v2.86.0+0 Installed Requires ──────────────────── v1.3.1 Installed StringManipulation ────────── v0.4.1 Installed LogExpFunctions ───────────── v0.3.29 Installed ColorTypes ────────────────── v0.12.1 Installed DiffRules ─────────────────── v1.15.1 Installed Parsers ───────────────────── v2.8.3 Installed Git_jll ───────────────────── v2.51.3+0 Installed JSON ──────────────────────── v0.21.4 Installed DocumenterTools ───────────── v0.1.21 Installed FiniteDiff ────────────────── v2.29.0 Installed Rmath ─────────────────────── v0.9.0 Installed Distributions ─────────────── v0.25.122 Installed PrettyTables ──────────────── v3.1.0 Installed StatsFuns ─────────────────── v1.5.2 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed PhyloNetworks ─────────────── v0.15.3 Installed BioGenerics ───────────────── v0.1.5 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed WeakRefStrings ────────────── v1.4.2 Installed XZ_jll ────────────────────── v5.8.1+0 Installed JLLWrappers ───────────────── v1.7.1 Installed MutableArithmetics ────────── v1.6.7 Installed StructTypes ───────────────── v1.11.0 Installed DataFrames ────────────────── v1.8.1 Installed Pango_jll ─────────────────── v1.56.4+0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed JpegTurbo_jll ─────────────── v3.1.3+0 Installed Adapt ─────────────────────── v4.4.0 Installed FilePathsBase ─────────────── v0.9.24 Installed NLopt ─────────────────────── v0.6.5 Installed FlameGraphs ───────────────── v1.1.0 Installed ConstructionBase ──────────── v1.6.0 Installed GLM ───────────────────────── v1.8.3 Installed Libmount_jll ──────────────── v2.41.2+0 Installed Gumbo_jll ─────────────────── v0.10.2+0 Installed HypergeometricFunctions ───── v0.3.28 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed Compat ────────────────────── v4.18.1 Installed TranscodingStreams ────────── v0.11.3 Installed PositiveFactorizations ────── v0.2.4 Installed Statistics ────────────────── v1.11.1 Installed Suppressor ────────────────── v0.2.8 Installed StatsAPI ──────────────────── v1.7.1 Installed PrecompileTools ───────────── v1.3.3 Installed xkbcommon_jll ─────────────── v1.9.2+0 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed CodecBzip2 ────────────────── v0.8.5 Installed ProfileView ───────────────── v1.10.2 Installed BioSymbols ────────────────── v5.2.0 Installed Libepoxy_jll ──────────────── v1.5.11+0 Installed CSV ───────────────────────── v0.10.15 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed JSON3 ─────────────────────── v1.14.3 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed PtrArrays ─────────────────── v1.3.0 Installed Parameters ────────────────── v0.12.3 Installed hicolor_icon_theme_jll ────── v0.18.0+0 Installed Git ───────────────────────── v1.5.0 Installed XML2_jll ──────────────────── v2.13.9+0 Installed SpecialFunctions ──────────── v2.6.1 Installed iso_codes_jll ─────────────── v4.18.0+0 Installed IntervalSets ──────────────── v0.7.11 Installed FixedPointNumbers ─────────── v0.8.5 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed Gtk4 ──────────────────────── v0.7.11 Installed gdk_pixbuf_jll ────────────── v2.42.13+0 Installed PhyNEST ───────────────────── v0.1.12 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed Gumbo ─────────────────────── v0.8.3 Installed LineSearches ──────────────── v7.4.0 Installed IndirectArrays ────────────── v1.0.0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed Xorg_libXrandr_jll ────────── v1.5.5+0 Installed ANSIColoredPrinters ───────── v0.0.1 Installed Automa ────────────────────── v1.1.0 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed MathProgBase ──────────────── v0.7.8 Installing 60 artifacts Installed artifact Xorg_xtrans 48.2 KiB Installed artifact LERC 272.9 KiB Installed artifact LZO 208.9 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact XZ 1.5 MiB Installed artifact gdk_pixbuf 943.6 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact Pixman 372.2 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Wayland 390.6 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Rmath 121.9 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact Libuuid 3.7 MiB Installed artifact libpng 328.4 KiB Installed artifact Pango 1.1 MiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Libepoxy 504.4 KiB Installed artifact Graphite2 120.2 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Libffi 44.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Libtiff 2.3 MiB Installed artifact FreeType2 1.5 MiB Installed artifact Libmount 6.5 MiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Librsvg 9.3 MiB Installed artifact Xorg_libXdamage 50.0 KiB Installed artifact xkbcommon 263.7 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact hicolor_icon_theme 13.2 KiB Installed artifact OpenSSH 4.3 MiB Installed artifact Gumbo 703.8 KiB Installed artifact adwaita_icon_theme 5.0 MiB Installed artifact NLopt 322.7 KiB Installed artifact Graphene 223.2 KiB Installed artifact iso_codes 7.5 MiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Cairo 2.2 MiB Installed artifact Wayland_protocols 185.1 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Glib 7.7 MiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Expat 283.3 KiB Installed artifact Git_LFS 9.6 MiB Installed artifact libsass 8.9 MiB Installed artifact XML2 2.5 MiB Installed artifact GTK4 14.1 MiB Installed artifact Git 48.9 MiB Updating `~/.julia/environments/v1.14/Project.toml` [115de871] + PhyNEST v0.1.12 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.3 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.10 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [e30172f5] + Documenter v0.27.25 [35a29f4d] + DocumenterTools v0.1.21 [4e289a0a] + EnumX v1.0.5 [c2308a5c] + FASTX v2.1.7 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [08572546] + FlameGraphs v1.1.0 [f6369f11] + ForwardDiff v1.2.2 ⌅ [d9f16b24] + Functors v0.3.0 ⌃ [38e38edf] + GLM v1.8.3 [d7ba0133] + Git v1.5.0 [a2bd30eb] + Graphics v1.1.3 [9db2cae5] + Gtk4 v0.7.11 [8710efd8] + GtkObservables v2.2.1 [708ec375] + Gumbo v0.8.3 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] + IOCapture v0.2.5 [9b13fd28] + IndirectArrays v1.0.0 [842dd82b] + InlineStrings v1.4.5 [8197267c] + IntervalSets v0.7.11 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.46.0 [fdba3010] + MathProgBase v0.7.8 [85b6ec6f] + MethodAnalysis v1.0.0 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.7 [d41bc354] + NLSolversBase v7.10.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [510215fc] + Observables v0.5.5 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [115de871] + PhyNEST v0.1.12 ⌅ [33ad39ac] + PhyloNetworks v0.15.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [c46f51b8] + ProfileView v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [d5f540fe] + RoundingIntegers v1.1.0 [fdea26ae] + SIMD v3.7.2 [322a6be2] + Sass v0.2.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.5 [856f2bd8] + StructTypes v1.11.0 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.3+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [6ebb71f1] + GTK4_jll v4.18.6+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.51.3+0 [7746bdde] + Glib_jll v2.86.0+0 [75302f13] + Graphene_jll v1.10.8+0 [3b182d85] + Graphite2_jll v1.3.15+0 [528830af] + Gumbo_jll v0.10.2+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [42c93a91] + Libepoxy_jll v1.5.11+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [925c91fb] + Librsvg_jll v2.54.7+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [079eb43e] + NLopt_jll v2.10.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [36c8627f] + Pango_jll v1.56.4+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [a2964d1f] + Wayland_jll v1.24.0+0 [2381bf8a] + Wayland_protocols_jll v1.44.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [0aeada51] + Xorg_libXdamage_jll v1.1.6+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [b437f822] + adwaita_icon_theme_jll v43.0.1+0 [da03df04] + gdk_pixbuf_jll v2.42.13+0 [059c91fe] + hicolor_icon_theme_jll v0.18.0+0 [bf975903] + iso_codes_jll v4.18.0+0 [b53b4c65] + libpng_jll v1.6.50+0 [47bcb7c8] + libsass_jll v3.6.6+0 [d8fb68d0] + xkbcommon_jll v1.9.2+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 30.36s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4790.9 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4399.7 ms ✓ MacroTools 1646.2 ms ✓ InlineStrings 860.8 ms ✓ Reexport 1128.3 ms ✓ ConstructionBase 2050.6 ms ✓ IrrationalConstants 780.1 ms ✓ DataValueInterfaces 832.8 ms ✓ StatsAPI 1024.0 ms ✓ Observables 923.8 ms ✓ Twiddle 1025.8 ms ✓ IntervalSets 845.2 ms ✓ CEnum 986.2 ms ✓ Functors 2141.4 ms ✓ Combinatorics 1084.9 ms ✓ StringViews 1285.1 ms ✓ TranscodingStreams 868.3 ms ✓ LaTeXStrings 1106.7 ms ✓ Statistics 950.1 ms ✓ StaticArraysCore 808.3 ms ✓ Suppressor 817.2 ms ✓ PtrArrays 1013.3 ms ✓ ANSIColoredPrinters 965.3 ms ✓ PositiveFactorizations 862.1 ms ✓ DataAPI 829.0 ms ✓ InvertedIndices 860.8 ms ✓ BitFlags 869.9 ms ✓ ShiftedArrays 1123.9 ms ✓ AbstractTrees 859.0 ms ✓ EnumX 1116.9 ms ✓ WorkerUtilities 2110.0 ms ✓ FillArrays 836.3 ms ✓ IndirectArrays 828.8 ms ✓ RoundingIntegers 816.9 ms ✓ UnPack 1266.5 ms ✓ OrderedCollections 1371.9 ms ✓ ADTypes 1117.8 ms ✓ DocStringExtensions 749.3 ms ✓ IteratorInterfaceExtensions 1843.8 ms ✓ Crayons 845.7 ms ✓ IOCapture 1079.0 ms ✓ DelimitedFiles 1127.4 ms ✓ NaNMath 1319.2 ms ✓ Requires 1252.1 ms ✓ SuiteSparse 2160.7 ms ✓ MathProgBase 933.5 ms ✓ Scratch 2829.5 ms ✓ SentinelArrays 1631.7 ms ✓ StructTypes 1198.5 ms ✓ Compat 1139.9 ms ✓ Preferences 11513.5 ms ✓ MutableArithmetics 1840.0 ms ✓ CommonSubexpressions 1120.0 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 807.7 ms ✓ IntervalSets → IntervalSetsRandomExt 774.9 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 973.2 ms ✓ BioGenerics 973.2 ms ✓ CodecZlib 1464.5 ms ✓ Statistics → SparseArraysExt 4378.4 ms ✓ FixedPointNumbers 1003.8 ms ✓ IntervalSets → IntervalSetsStatisticsExt 1610.6 ms ✓ DiffResults 1588.9 ms ✓ AliasTables 1276.0 ms ✓ Missings 1417.5 ms ✓ PooledArrays 997.5 ms ✓ LeftChildRightSiblingTrees 1113.2 ms ✓ MethodAnalysis 1630.8 ms ✓ FillArrays → FillArraysSparseArraysExt 1081.6 ms ✓ FillArrays → FillArraysStatisticsExt 1111.8 ms ✓ Parameters 805.0 ms ✓ ADTypes → ADTypesConstructionBaseExt 2269.1 ms ✓ DifferentiationInterface 1673.4 ms ✓ LogExpFunctions 926.4 ms ✓ TableTraits 995.1 ms ✓ Adapt 9129.9 ms ✓ FileIO 1811.1 ms ✓ PDMats 838.7 ms ✓ Compat → CompatLinearAlgebraExt 920.5 ms ✓ PrecompileTools 1209.3 ms ✓ JLLWrappers 3073.1 ms ✓ Setfield 2733.3 ms ✓ ColorTypes 1307.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1742.6 ms ✓ Tables 1158.8 ms ✓ ArrayInterface 1224.3 ms ✓ Adapt → AdaptSparseArraysExt 1453.9 ms ✓ FillArrays → FillArraysPDMatsExt 2089.7 ms ✓ FilePathsBase 3868.1 ms ✓ DataStructures 2537.7 ms ✓ BioSymbols 3127.0 ms ✓ StringManipulation 16729.7 ms ✓ SIMD 13759.6 ms ✓ StaticArrays 16554.0 ms ✓ Parsers 1496.2 ms ✓ Libffi_jll 1395.9 ms ✓ LZO_jll 1386.5 ms ✓ Bzip2_jll 1442.3 ms ✓ XZ_jll 1410.0 ms ✓ NLopt_jll 1428.1 ms ✓ Rmath_jll 1424.6 ms ✓ OpenSpecFun_jll 1234.0 ms ✓ Xorg_xtrans_jll 1430.4 ms ✓ libpng_jll 1446.1 ms ✓ iso_codes_jll 1174.4 ms ✓ EpollShim_jll 1228.7 ms ✓ Wayland_protocols_jll 1422.0 ms ✓ Libmount_jll 1435.1 ms ✓ Libuuid_jll 1477.7 ms ✓ FriBidi_jll 1437.4 ms ✓ LERC_jll 1427.2 ms ✓ Git_LFS_jll 1420.4 ms ✓ libsass_jll 1450.1 ms ✓ Gumbo_jll 1418.5 ms ✓ Xorg_libXau_jll 1478.8 ms ✓ OpenSSH_jll 1425.8 ms ✓ hicolor_icon_theme_jll 1410.5 ms ✓ Graphite2_jll 1419.2 ms ✓ LLVMOpenMP_jll 1409.7 ms ✓ Libiconv_jll 1420.5 ms ✓ Xorg_libXdmcp_jll 1387.6 ms ✓ Expat_jll 1468.0 ms ✓ JpegTurbo_jll 1274.6 ms ✓ ColorTypes → StyledStringsExt 7949.3 ms ✓ Colors 785.9 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1272.2 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 2624.2 ms ✓ FilePathsBase → FilePathsBaseTestExt 947.2 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1542.8 ms ✓ SortingAlgorithms 2772.4 ms ✓ QuadGK 10272.7 ms ✓ BioSequences 38941.1 ms ✓ PrettyTables 20434.6 ms ✓ Automa 1412.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1441.1 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1389.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1355.6 ms ✓ Adapt → AdaptStaticArraysExt 14047.5 ms ✓ JSON3 3937.1 ms ✓ JSON 959.6 ms ✓ InlineStrings → ParsersExt 1008.4 ms ✓ CodecBzip2 1436.4 ms ✓ FreeType2_jll 1497.8 ms ✓ Rmath 5210.3 ms ✓ SpecialFunctions 2018.1 ms ✓ Sass 1227.5 ms ✓ Gumbo 1418.0 ms ✓ adwaita_icon_theme_jll 1420.3 ms ✓ Pixman_jll 1452.1 ms ✓ XML2_jll 1429.2 ms ✓ GettextRuntime_jll 1481.9 ms ✓ Xorg_libxcb_jll 1554.0 ms ✓ Git_jll 1376.8 ms ✓ Wayland_jll 1385.9 ms ✓ Libtiff_jll 1385.9 ms ✓ Graphics 10581.5 ms ✓ FlameGraphs 1327.5 ms ✓ FiniteDiff 8813.1 ms ✓ StatsBase 89829.6 ms ✓ DataFrames 22236.9 ms ✓ FASTX 8387.7 ms ✓ Documenter 2951.1 ms ✓ BenchmarkTools 2438.4 ms ✓ WeakRefStrings 1581.0 ms ✓ Fontconfig_jll 2387.4 ms ✓ HypergeometricFunctions 1214.9 ms ✓ DiffRules 1493.3 ms ✓ Glib_jll 1415.5 ms ✓ Xorg_libX11_jll 966.9 ms ✓ Git 1370.9 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1257.6 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 958.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2351.5 ms ✓ FASTX → BioSequencesExt 28155.0 ms ✓ CSV 2769.1 ms ✓ StatsFuns 6649.0 ms ✓ ForwardDiff 1467.1 ms ✓ Graphene_jll 1444.7 ms ✓ Xorg_libXfixes_jll 1441.3 ms ✓ Xorg_libXrender_jll 1454.0 ms ✓ Xorg_libXext_jll 1387.9 ms ✓ Xorg_libxkbfile_jll 1496.2 ms ✓ gdk_pixbuf_jll 4156.9 ms ✓ DocumenterTools 7811.9 ms ✓ StatsModels 13480.8 ms ✓ Distributions 1748.7 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1517.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 77557.1 ms ✓ MathOptInterface 1439.5 ms ✓ Xorg_libXdamage_jll 1478.5 ms ✓ Xorg_libXcursor_jll 1319.2 ms ✓ Xorg_libXrandr_jll 1090.2 ms ✓ Xorg_libXinerama_jll 1097.5 ms ✓ Xorg_libXi_jll 1460.6 ms ✓ Cairo_jll 1372.1 ms ✓ Libglvnd_jll 1390.4 ms ✓ Xorg_xkbcomp_jll 9404.6 ms ✓ GLM 4156.6 ms ✓ Distributions → DistributionsTestExt 2313.0 ms ✓ NLSolversBase 6986.6 ms ✓ NLopt 1542.9 ms ✓ HarfBuzz_jll 1136.8 ms ✓ Libepoxy_jll 955.9 ms ✓ Xorg_xkeyboard_config_jll 4064.7 ms ✓ LineSearches 29149.1 ms ✓ PhyloNetworks 1490.8 ms ✓ Pango_jll 1361.2 ms ✓ xkbcommon_jll 10844.0 ms ✓ Optim 2594.0 ms ✓ Cairo 1614.7 ms ✓ Librsvg_jll 1665.2 ms ✓ GTK4_jll 6748.0 ms ✓ Optim → OptimMOIExt 48781.2 ms ✓ Gtk4 26068.4 ms ✓ GtkObservables 17503.8 ms ✓ ProfileView 24490.4 ms ✓ PhyNEST 214 dependencies successfully precompiled in 895 seconds. 39 already precompiled. 2 dependencies had output during precompilation: ┌ ProfileView │ (julia:1114): Gtk-WARNING **: 02:11:42.449: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ ┌ GtkObservables │ (julia:1104): Gtk-WARNING **: 02:11:08.433: Unable to acquire session bus: Cannot spawn a message bus without a machine-id: Invalid machine ID in /workspace/destdir/var/lib/dbus/machine-id or /etc/machine-id └ Precompilation completed after 903.58s ################################################################################ # Testing # Testing PhyNEST Status `/tmp/jl_y1BUzm/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.122 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 [d3d80556] LineSearches v7.4.0 [429524aa] Optim v1.13.2 [115de871] PhyNEST v0.1.12 ⌅ [33ad39ac] PhyloNetworks v0.15.3 [c46f51b8] ProfileView v1.10.2 ⌅ [2913bbd2] StatsBase v0.33.21 [fd094767] Suppressor v0.2.8 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [56ddb016] Logging v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_y1BUzm/Manifest.toml` [47edcb42] ADTypes v1.18.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [67c07d97] Automa v1.1.0 [6e4b80f9] BenchmarkTools v1.6.3 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.10 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 [4e289a0a] EnumX v1.0.5 [c2308a5c] FASTX v2.1.7 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [08572546] FlameGraphs v1.1.0 [f6369f11] ForwardDiff v1.2.2 ⌅ [d9f16b24] Functors v0.3.0 ⌃ [38e38edf] GLM v1.8.3 [d7ba0133] Git v1.5.0 [a2bd30eb] Graphics v1.1.3 [9db2cae5] Gtk4 v0.7.11 [8710efd8] GtkObservables v2.2.1 [708ec375] Gumbo v0.8.3 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [9b13fd28] IndirectArrays v1.0.0 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.11 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 [d3d80556] LineSearches v7.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.46.0 [fdba3010] MathProgBase v0.7.8 [85b6ec6f] MethodAnalysis v1.0.0 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.7 [d41bc354] NLSolversBase v7.10.0 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [510215fc] Observables v0.5.5 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [d96e819e] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Testing misc.function get_average | 100 100 1.7s Test Summary: | Pass Total Time Testing site pattern proabilities | 1000 1000 0.2s Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:55 Expression: isapprox(est3, t3, atol = tol) Evaluated: isapprox(7.554247054186638, 7.9288; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:55 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:58 Expression: isapprox(est1, t1, atol = tol) Evaluated: isapprox(2.8211381205453723, 2.6169; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:58 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:60 Expression: isapprox(est3, t3, atol = tol) Evaluated: isapprox(8.1757887992659, 7.9288; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:60 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:63 Expression: isapprox(est1, t1, atol = tol) Evaluated: isapprox(2.3787306299972113, 2.6169; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:63 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:69 Expression: isapprox(est2, t2, atol = tol) Evaluated: isapprox(6.159832334308964, 5.6806; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:69 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:70 Expression: isapprox(est3, t3, atol = tol) Evaluated: isapprox(8.370043836110105, 7.9288; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:70 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Testing Method-of-moment estimates of speciation times: Test Failed at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:75 Expression: isapprox(est3, t3, atol = tol) Evaluated: isapprox(8.40889617178621, 7.9288; atol = 0.2) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] [2] macro expansion @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:75 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [4] top-level scope @ ~/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:41 Test Summary: | Pass Fail Total Time Testing Method-of-moment estimates of speciation times | 1493 7 1500 4.6s RNG of the outermost testset: Random.Xoshiro(0x1a1e07615d89f3a6, 0xebcf9fc05885e4d7, 0x9ed5fc146de0a4e6, 0xec3ed32dd760d530, 0x6d7299497024aef9) ERROR: LoadError: Some tests did not pass: 1493 passed, 7 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/test_check.jl:40 in expression starting at /home/pkgeval/.julia/packages/PhyNEST/bC6xd/test/runtests.jl:11 Testing failed after 56.24s ERROR: LoadError: Package PhyNEST errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1029.2s: package has test failures