Package evaluation to test BioMakie on Julia 1.14.0-DEV.36 (e2f3178d9b*) started at 2025-11-07T04:23:42.552 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.38s ################################################################################ # Installation # Installing BioMakie... Resolving package versions... Installed Libuuid_jll ───────────────── v2.41.2+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed ImageIO ───────────────────── v0.6.9 Installed CommonWorldInvalidations ──── v1.0.0 Installed libaom_jll ────────────────── v3.13.1+0 Installed MosaicViews ───────────────── v0.3.4 Installed libass_jll ────────────────── v0.17.4+0 Installed PolygonOps ────────────────── v0.1.2 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Xorg_libXinerama_jll ──────── v1.1.6+0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed OrderedCollections ────────── v1.8.1 Installed NearestNeighbors ──────────── v0.4.22 Installed Extents ───────────────────── v0.1.6 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed Colorfy ───────────────────── v1.1.2 Installed TransmuteDims ─────────────── v0.1.17 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed TensorCast ────────────────── v0.4.9 Installed ChainRules ────────────────── v1.72.6 Installed Giflib_jll ────────────────── v5.2.3+0 Installed Distances ─────────────────── v0.10.12 Installed NaNMath ───────────────────── v1.1.3 Installed Graphics ──────────────────── v1.1.3 Installed FileIO ────────────────────── v1.17.1 Installed QuadGK ────────────────────── v2.11.2 Installed StaticArrayInterface ──────── v1.8.0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Opus_jll ──────────────────── v1.5.2+0 Installed ScopedValues ──────────────── v1.5.0 Installed AdaptivePredicates ────────── v1.2.0 Installed PackageExtensionCompat ────── v1.0.2 Installed PairwiseListMatrices ──────── v0.11.1 Installed libinchi_jll ──────────────── v1.6.0+0 Installed Ogg_jll ───────────────────── v1.3.6+0 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed WoodburyMatrices ──────────── v1.0.0 Installed EnumX ─────────────────────── v1.0.5 Installed Tables ────────────────────── v1.12.1 Installed InverseFunctions ──────────── v0.1.17 Installed Reexport ──────────────────── v1.2.2 Installed BioAlignments ─────────────── v3.1.0 Installed LZO_jll ───────────────────── v2.10.3+0 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Missings ──────────────────── v1.2.0 Installed Static ────────────────────── v1.3.1 Installed TableTraits ───────────────── v1.0.1 Installed Preferences ───────────────── v1.5.0 Installed Hyperscript ───────────────── v0.0.5 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed Imath_jll ─────────────────── v3.1.11+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed MappedArrays ──────────────── v0.4.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed Grisu ─────────────────────── v1.0.2 Installed RangeArrays ───────────────── v0.3.2 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed Format ────────────────────── v1.3.7 Installed CRlibm ────────────────────── v1.0.2 Installed Inflate ───────────────────── v0.1.5 Installed GLMakie ───────────────────── v0.11.11 Installed DataStructures ────────────── v0.18.22 Installed ColorBrewer ───────────────── v0.4.2 Installed MacroTools ────────────────── v0.5.16 Installed Indexing ──────────────────── v1.1.1 Installed DiffResults ───────────────── v1.1.0 Installed URIs ──────────────────────── v1.6.1 Installed OpenEXR_jll ───────────────── v3.2.4+0 Installed AbstractTrees ─────────────── v0.4.5 Installed Packing ───────────────────── v0.5.1 Installed FillArrays ────────────────── v1.15.0 Installed StridedViews ──────────────── v0.4.1 Installed LazyModules ───────────────── v0.3.1 Installed Quaternions ───────────────── v0.7.6 Installed MakieCore ─────────────────── v0.9.5 Installed oneTBB_jll ────────────────── v2022.0.0+1 Installed DelimitedFiles ────────────── v1.9.1 Installed ArnoldiMethod ─────────────── v0.4.0 Installed x264_jll ──────────────────── v10164.0.1+0 Installed UnicodeFun ────────────────── v0.4.1 Installed CodecZlib ─────────────────── v0.7.8 Installed Observables ───────────────── v0.5.5 Installed StatsBase ─────────────────── v0.34.7 Installed Cairo ─────────────────────── v1.1.1 Installed Zygote ────────────────────── v0.7.10 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed ArrayInterface ────────────── v7.22.0 Installed DataValueInterfaces ───────── v1.0.0 Installed CEnum ─────────────────────── v0.5.0 Installed CommonSubexpressions ──────── v0.3.1 Installed MathTeXEngine ─────────────── v0.6.7 Installed TransformsBase ────────────── v1.6.0 Installed LoggingExtras ─────────────── v1.2.0 Installed Libffi_jll ────────────────── v3.4.7+0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed RealDot ───────────────────── v0.1.0 Installed IrrationalConstants ───────── v0.2.6 Installed libdecor_jll ──────────────── v0.2.2+0 Installed GPUArraysCore ─────────────── v0.2.0 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed libpng_jll ────────────────── v1.6.50+0 Installed isoband_jll ───────────────── v0.2.3+0 Installed coordgenlibs_jll ──────────── v3.0.2+0 Installed Contour ───────────────────── v0.6.3 Installed SimpleTraits ──────────────── v0.9.5 Installed ImageMetadata ─────────────── v0.9.10 Installed RoundingEmulator ──────────── v0.2.1 Installed ColorVectorSpace ──────────── v0.11.0 Installed HTTP ──────────────────────── v1.10.19 Installed DataValues ────────────────── v0.4.13 Installed Interpolations ────────────── v0.15.1 Installed StableRNGs ────────────────── v1.0.3 Installed BitFlags ──────────────────── v0.1.9 Installed ImageShow ─────────────────── v0.3.8 Installed libfdk_aac_jll ────────────── v2.0.4+0 Installed libsixel_jll ──────────────── v1.10.5+0 Installed Scratch ───────────────────── v1.3.0 Installed libwebp_jll ───────────────── v1.6.0+0 Installed SimpleBufferStream ────────── v1.2.0 Installed FFMPEG_jll ────────────────── v6.1.3+0 Installed FASTX ─────────────────────── v2.1.7 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed ShaderAbstractions ────────── v0.5.0 Installed PDMats ────────────────────── v0.11.36 Installed GZip ──────────────────────── v0.6.2 Installed ImageCore ─────────────────── v0.10.5 Installed NamedArrays ───────────────── v0.10.5 Installed DocStringExtensions ───────── v0.9.5 Installed AxisArrays ────────────────── v0.4.8 Installed PNGFiles ──────────────────── v0.4.4 Installed BioSequences ──────────────── v3.5.0 Installed IntervalTrees ─────────────── v1.1.0 Installed JpegTurbo ─────────────────── v0.1.6 Installed CircularArrays ────────────── v1.4.0 Installed ForwardDiff ───────────────── v1.2.2 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0 Installed CoordRefSystems ───────────── v0.18.10 Installed FreeType ──────────────────── v4.1.1 Installed ColorSchemes ──────────────── v3.31.0 Installed LightXML ──────────────────── v0.9.3 Installed PkgVersion ────────────────── v0.3.3 Installed StackViews ────────────────── v0.1.2 Installed RelocatableFolders ────────── v1.0.1 Installed KernelDensity ─────────────── v0.6.10 Installed GLFW ──────────────────────── v3.4.5 Installed TiledIteration ────────────── v0.5.0 Installed StringViews ───────────────── v1.3.5 Installed AliasTables ───────────────── v1.1.3 Installed SplitApplyCombine ─────────── v1.2.3 Installed SparseInverseSubset ───────── v0.1.2 Installed HashArrayMappedTries ──────── v0.2.0 Installed ConcurrentUtilities ───────── v2.5.0 Installed Combinatorics ─────────────── v1.0.3 Installed RecipesBase ───────────────── v1.3.4 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed SIMD ──────────────────────── v3.7.2 Installed MolecularGraph ────────────── v0.18.0 Installed MeshIO ────────────────────── v0.5.3 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed Wayland_jll ───────────────── v1.24.0+0 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed Netpbm ────────────────────── v1.1.1 Installed Colors ────────────────────── v0.13.1 Installed Xorg_libxkbfile_jll ───────── v1.1.3+0 Installed StaticArraysCore ──────────── v1.4.4 Installed ImageAxes ─────────────────── v0.6.12 Installed Twiddle ───────────────────── v1.1.2 Installed StaticArrays ──────────────── v1.9.15 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed AbstractFFTs ──────────────── v1.5.0 Installed SciMLPublic ───────────────── v1.0.0 Installed AxisAlgorithms ────────────── v1.1.0 Installed QOI ───────────────────────── v1.0.1 Installed ColorTypes ────────────────── v0.12.1 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed Glib_jll ──────────────────── v2.86.0+0 Installed Requires ──────────────────── v1.3.1 Installed BaseDirs ──────────────────── v1.3.2 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed JSON ──────────────────────── v0.21.4 Installed FreeTypeAbstraction ───────── v0.10.8 Installed Parsers ───────────────────── v2.8.3 Installed Rmath ─────────────────────── v0.9.0 Installed BioGenerics ───────────────── v0.1.5 Installed AutoHashEquals ────────────── v2.2.0 Installed FilePaths ─────────────────── v0.8.3 Installed Distributions ─────────────── v0.25.122 Installed StatsFuns ─────────────────── v1.5.2 Installed IRTools ───────────────────── v0.4.15 Installed Unitful ───────────────────── v1.25.1 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed OpenEXR ───────────────────── v0.3.3 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed SignedDistanceFields ──────── v0.4.0 Installed GridLayoutBase ────────────── v0.11.2 Installed BioMakie ──────────────────── v0.4.4 Installed JLLWrappers ───────────────── v1.7.1 Installed ZygoteRules ───────────────── v0.2.7 Installed XZ_jll ────────────────────── v5.8.1+0 Installed x265_jll ──────────────────── v4.1.0+0 Installed ExactPredicates ───────────── v2.2.9 Installed GeometryBasics ────────────── v0.5.10 Installed StructTypes ───────────────── v1.11.0 Installed Graphs ────────────────────── v1.13.1 Installed Pango_jll ─────────────────── v1.56.4+0 Installed IterTools ─────────────────── v1.10.0 Installed TiffImages ────────────────── v0.11.6 Installed Dictionaries ──────────────── v0.4.5 Installed ModernGL ──────────────────── v1.1.8 Installed Lazy ──────────────────────── v0.15.1 Installed MIToS ─────────────────────── v3.2.3 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed JpegTurbo_jll ─────────────── v3.1.3+0 Installed FilePathsBase ─────────────── v0.9.24 Installed PaddedViews ───────────────── v0.5.12 Installed Dbus_jll ──────────────────── v1.16.2+0 Installed BioStructures ─────────────── v4.7.0 Installed Adapt ─────────────────────── v4.4.0 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed Libmount_jll ──────────────── v2.41.2+0 Installed TriplotBase ───────────────── v0.1.0 Installed ExceptionUnwrapping ───────── v0.1.11 Installed Sixel ─────────────────────── v0.1.5 Installed TranscodingStreams ────────── v0.11.3 Installed Compat ────────────────────── v4.18.1 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed PlotUtils ─────────────────── v1.4.4 Installed EarCut_jll ────────────────── v2.2.4+0 Installed TensorCore ────────────────── v0.1.1 Installed Statistics ────────────────── v1.11.1 Installed ImageBase ─────────────────── v0.1.7 Installed PrecompileTools ───────────── v1.3.3 Installed Makie ─────────────────────── v0.22.10 Installed StatsAPI ──────────────────── v1.7.1 Installed StructArrays ──────────────── v0.7.2 Installed StringEncodings ───────────── v0.3.7 Installed OffsetArrays ──────────────── v1.17.0 Installed ProgressMeter ─────────────── v1.11.0 Installed Meshes ────────────────────── v0.53.30 Installed OpenSSL ───────────────────── v1.6.0 Installed WebP ──────────────────────── v0.1.3 Installed MbedTLS ───────────────────── v1.1.9 Installed BioSymbols ────────────────── v5.2.0 Installed TableTraitsUtils ──────────── v1.0.2 Installed xkbcommon_jll ─────────────── v1.9.2+0 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed Ratios ────────────────────── v0.4.5 Installed TupleTools ────────────────── v1.6.0 Installed ChainRulesCore ────────────── v1.26.0 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed GLFW_jll ──────────────────── v3.4.0+2 Installed LAME_jll ──────────────────── v3.100.3+0 Installed JSON3 ─────────────────────── v1.14.3 Installed YAML ──────────────────────── v0.4.15 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed IntervalArithmetic ────────── v1.0.1 Installed libvorbis_jll ─────────────── v1.3.8+0 Installed IfElse ────────────────────── v0.1.1 Installed PtrArrays ─────────────────── v1.3.0 Installed Isoband ───────────────────── v0.1.1 Installed XML2_jll ──────────────────── v2.15.1+0 Installed Animations ────────────────── v0.4.2 Installed Showoff ───────────────────── v1.0.3 Installed FixedPointNumbers ─────────── v0.8.5 Installed IntervalSets ──────────────── v0.7.11 Installed SpecialFunctions ──────────── v2.6.1 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed LazyStack ─────────────────── v0.1.3 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed FFTW ──────────────────────── v1.10.0 Installed Rotations ─────────────────── v1.7.1 Installed FastaIO ───────────────────── v1.1.0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed Xorg_libXrandr_jll ────────── v1.5.5+0 Installed MbedTLS_jll ───────────────── v2.28.10+0 Installed IndirectArrays ────────────── v1.0.0 Installed Automa ────────────────────── v1.1.0 Installed Strided ───────────────────── v2.3.2 Installed Bessels ───────────────────── v0.2.8 Installed DelaunayTriangulation ─────── v1.6.5 Installing 70 artifacts Installed artifact Xorg_xtrans 48.2 KiB Installed artifact LERC 272.9 KiB Installed artifact coordgenlibs 303.6 KiB Installed artifact Opus 925.5 KiB Installed artifact LZO 208.9 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact OpenEXR 1.9 MiB Installed artifact MbedTLS 2.2 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact XZ 1.5 MiB Installed artifact Pixman 372.2 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact isoband 25.7 KiB Installed artifact Wayland 390.6 KiB Installed artifact libass 427.8 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Rmath 121.9 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact libpng 328.4 KiB Installed artifact Dbus 489.8 KiB Installed artifact Pango 1.1 MiB Installed artifact FriBidi 78.9 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact libaom 6.4 MiB Installed artifact Libffi 44.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Libuuid 3.7 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact FreeType2 1.5 MiB Installed artifact XML2 2.2 MiB Installed artifact Libtiff 2.3 MiB Installed artifact Libmount 6.5 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Ogg 250.3 KiB Installed artifact GLFW 180.1 KiB Installed artifact xkbcommon 263.7 KiB Installed artifact libvorbis 271.0 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact CRlibm 169.5 KiB Installed artifact libsixel 177.3 KiB Installed artifact x264 2.1 MiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact x265 1.4 MiB Installed artifact libdecor 44.1 KiB Installed artifact Giflib 154.6 KiB Installed artifact libwebp 2.6 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact FFTW 2.2 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact libinchi 933.4 KiB Installed artifact Cairo 2.2 MiB Installed artifact Imath 182.8 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact EarCut 80.5 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Expat 283.3 KiB Installed artifact LAME 292.5 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Glib 7.7 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact FFMPEG 11.0 MiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Updating `~/.julia/environments/v1.14/Project.toml` [7de43156] + BioMakie v0.4.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [15f4f7f2] + AutoHashEquals v2.2.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.3.2 [0e736298] + Bessels v0.2.8 [00701ae9] + BioAlignments v3.1.0 [47718e42] + BioGenerics v0.1.5 [7de43156] + BioMakie v0.4.4 [7e6ae17a] + BioSequences v3.5.0 [de9282ab] + BioStructures v4.7.0 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [159f3aea] + Cairo v1.1.1 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [7a955b69] + CircularArrays v1.4.0 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [03fe91ce] + Colorfy v1.1.2 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 ⌅ [b46f11dc] + CoordRefSystems v0.18.10 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [e7dc6d0d] + DataValues v0.4.13 [927a84f5] + DelaunayTriangulation v1.6.5 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.9 [460bff9d] + ExceptionUnwrapping v0.1.11 [411431e0] + Extents v0.1.6 [c2308a5c] + FASTX v2.1.7 [7a1cc6ca] + FFTW v1.10.0 [a0c94c4b] + FastaIO v1.1.0 [5789e2e9] + FileIO v1.17.1 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.2.2 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 [f7f18e0c] + GLFW v3.4.5 ⌅ [e9467ef8] + GLMakie v0.11.11 [46192b85] + GPUArraysCore v0.2.0 [92fee26a] + GZip v0.6.2 [5c1252a2] + GeometryBasics v0.5.10 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.13.1 [3955a311] + GridLayoutBase v0.11.2 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [47d2ed2b] + Hyperscript v0.0.5 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [4e3cecfd] + ImageShow v0.3.8 [313cdc1a] + Indexing v1.1.1 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 ⌅ [a98d9a8b] + Interpolations v0.15.1 [d1acc4aa] + IntervalArithmetic v1.0.1 [8197267c] + IntervalSets v0.7.11 [524e6230] + IntervalTrees v1.1.0 [3587e190] + InverseFunctions v0.1.17 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[ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 35.57s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4747.4 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4237.9 ms ✓ MacroTools 809.7 ms ✓ Reexport 931.5 ms ✓ MappedArrays 874.0 ms ✓ TensorCore 1101.3 ms ✓ ConstructionBase 2063.0 ms ✓ IrrationalConstants 804.1 ms ✓ DataValueInterfaces 862.0 ms ✓ StatsAPI 2362.8 ms ✓ Format 1027.6 ms ✓ Observables 846.6 ms ✓ Twiddle 922.0 ms ✓ RoundingEmulator 817.3 ms ✓ PolygonOps 1155.5 ms ✓ IterTools 1011.1 ms ✓ IntervalSets 827.4 ms ✓ CEnum 825.4 ms ✓ Indexing 2005.4 ms ✓ Combinatorics 1060.5 ms ✓ StringViews 961.5 ms ✓ Inflate 878.2 ms ✓ Contour 1017.3 ms ✓ TupleTools 1262.8 ms ✓ TranscodingStreams 838.7 ms ✓ LaTeXStrings 1111.9 ms ✓ Statistics 912.1 ms ✓ StaticArraysCore 914.8 ms ✓ StableRNGs 2849.9 ms ✓ AdaptivePredicates 773.0 ms ✓ IfElse 924.3 ms ✓ AutoHashEquals 799.6 ms ✓ PtrArrays 789.6 ms ✓ SimpleBufferStream 1172.2 ms ✓ Grisu 850.9 ms ✓ DataAPI 861.9 ms ✓ SciMLPublic 779.6 ms ✓ RealDot 786.0 ms ✓ CommonWorldInvalidations 1172.2 ms ✓ URIs 830.7 ms ✓ InvertedIndices 1002.6 ms ✓ LazyModules 957.0 ms ✓ InverseFunctions 877.6 ms ✓ BitFlags 1117.8 ms ✓ AbstractTrees 1047.1 ms ✓ AbstractFFTs 854.2 ms ✓ EnumX 2114.5 ms ✓ FillArrays 904.9 ms ✓ TriplotBase 820.7 ms ✓ IndirectArrays 2576.3 ms ✓ Bessels 993.1 ms ✓ Extents 842.5 ms ✓ RangeArrays 1229.8 ms ✓ OrderedCollections 3844.3 ms ✓ ModernGL 887.1 ms ✓ HashArrayMappedTries 1084.0 ms ✓ DocStringExtensions 4618.6 ms ✓ BaseDirs 1169.7 ms ✓ IntervalTrees 1567.8 ms ✓ OffsetArrays 742.6 ms ✓ IteratorInterfaceExtensions 766.2 ms ✓ PackageExtensionCompat 948.4 ms ✓ DelimitedFiles 993.7 ms ✓ NaNMath 1172.0 ms ✓ Requires 1725.0 ms ✓ ConcurrentUtilities 1196.9 ms ✓ SuiteSparse 1430.1 ms ✓ WoodburyMatrices 1168.1 ms ✓ GZip 891.3 ms ✓ Scratch 32013.9 ms ✓ Unitful 1616.1 ms ✓ StructTypes 1101.3 ms ✓ LoggingExtras 1774.7 ms ✓ ProgressMeter 3456.6 ms ✓ UnicodeFun 1157.3 ms ✓ Compat 1115.1 ms ✓ Preferences 1185.4 ms ✓ Hyperscript 1561.1 ms ✓ ExceptionUnwrapping 4614.6 ms ✓ PkgVersion 5416.8 ms ✓ Lazy 1708.8 ms ✓ CommonSubexpressions 4007.2 ms ✓ IRTools 3610.8 ms ✓ SimpleTraits 1870.9 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 3911.1 ms ✓ DataValues 962.7 ms ✓ IntervalSets → IntervalSetsRandomExt 910.5 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 2001.5 ms ✓ Dictionaries 895.0 ms ✓ BioGenerics 926.0 ms ✓ CodecZlib 783.4 ms ✓ SignedDistanceFields 1283.5 ms ✓ Statistics → SparseArraysExt 3635.8 ms ✓ FixedPointNumbers 1696.3 ms ✓ Distances 762.5 ms ✓ IntervalSets → IntervalSetsStatisticsExt 840.1 ms ✓ DiffResults 938.5 ms ✓ AliasTables 860.7 ms ✓ Showoff 957.3 ms ✓ Missings 1066.5 ms ✓ Quaternions 899.6 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1729.3 ms ✓ InverseFunctions → InverseFunctionsTestExt 4041.5 ms ✓ OpenSSL 846.8 ms ✓ TransformsBase 3607.1 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1502.1 ms ✓ FillArrays → FillArraysSparseArraysExt 981.5 ms ✓ FillArrays → FillArraysStatisticsExt 849.1 ms ✓ ScopedValues 1460.6 ms ✓ LogExpFunctions 1060.8 ms ✓ PaddedViews 850.5 ms ✓ CircularArrays 970.9 ms ✓ StackViews 731.6 ms ✓ TableTraits 898.6 ms ✓ StridedViews 796.1 ms ✓ Ratios 887.4 ms ✓ Adapt 8771.9 ms ✓ FileIO 1854.0 ms ✓ PDMats 1273.8 ms ✓ SparseInverseSubset 1350.2 ms ✓ AxisAlgorithms 1027.2 ms ✓ FastaIO 1100.3 ms ✓ RelocatableFolders 1878.0 ms ✓ Unitful → ConstructionBaseUnitfulExt 2098.9 ms ✓ Unitful → PrintfExt 2538.2 ms ✓ Unitful → InverseFunctionsUnitfulExt 813.4 ms ✓ Compat → CompatLinearAlgebraExt 908.1 ms ✓ PrecompileTools 1142.4 ms ✓ JLLWrappers 1667.5 ms ✓ AxisArrays 1427.4 ms ✓ SplitApplyCombine 2212.8 ms ✓ NamedArrays 2708.1 ms ✓ ColorTypes 1257.5 ms ✓ Distances → DistancesSparseArraysExt 856.5 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1509.1 ms ✓ MosaicViews 1744.1 ms ✓ Tables 1766.7 ms ✓ TableTraitsUtils 752.8 ms ✓ StridedViews → StridedViewsPtrArraysExt 1187.9 ms ✓ Strided 865.3 ms ✓ Ratios → RatiosFixedPointNumbersExt 1246.4 ms ✓ ArrayInterface 1245.4 ms ✓ Adapt → AdaptSparseArraysExt 1163.3 ms ✓ GPUArraysCore 795.1 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1446.7 ms ✓ FillArrays → FillArraysPDMatsExt 2546.7 ms ✓ ChainRulesCore 2032.8 ms ✓ FilePathsBase 3682.9 ms ✓ DataStructures 2577.2 ms ✓ BioSymbols 16156.9 ms ✓ SIMD 12577.3 ms ✓ StaticArrays 2721.3 ms ✓ RecipesBase 15988.5 ms ✓ Parsers 5050.9 ms ✓ Static 1468.7 ms ✓ Libffi_jll 1392.9 ms ✓ LZO_jll 1390.5 ms ✓ EarCut_jll 1387.9 ms ✓ Bzip2_jll 1399.9 ms ✓ OpenBLASConsistentFPCSR_jll 1383.8 ms ✓ isoband_jll 1347.0 ms ✓ libinchi_jll 1415.7 ms ✓ XZ_jll 1381.5 ms ✓ Rmath_jll 1409.0 ms ✓ OpenSpecFun_jll 1216.1 ms ✓ Xorg_xtrans_jll 1366.5 ms ✓ Opus_jll 4670.0 ms ✓ IntelOpenMP_jll 1400.2 ms ✓ x265_jll 1535.1 ms ✓ libpng_jll 1358.4 ms ✓ CRlibm_jll 5491.8 ms ✓ oneTBB_jll 1386.1 ms ✓ coordgenlibs_jll 1517.1 ms ✓ Imath_jll 1110.0 ms ✓ EpollShim_jll 1345.6 ms ✓ Libmount_jll 1356.4 ms ✓ libfdk_aac_jll 1345.3 ms ✓ Libuuid_jll 1393.6 ms ✓ FriBidi_jll 1459.4 ms ✓ LERC_jll 1366.1 ms ✓ Xorg_libXau_jll 1325.9 ms ✓ Ogg_jll 1335.1 ms ✓ FFTW_jll 1324.6 ms ✓ LAME_jll 1303.8 ms ✓ Graphite2_jll 1322.2 ms ✓ x264_jll 1346.8 ms ✓ LLVMOpenMP_jll 1322.5 ms ✓ Libiconv_jll 1336.7 ms ✓ MbedTLS_jll 1358.7 ms ✓ libaom_jll 1325.9 ms ✓ Xorg_libXdmcp_jll 1495.0 ms ✓ Giflib_jll 1408.3 ms ✓ Expat_jll 1552.1 ms ✓ JpegTurbo_jll 1247.4 ms ✓ ColorTypes → StyledStringsExt 7735.0 ms ✓ Colors 3699.6 ms ✓ ColorVectorSpace 1634.7 ms ✓ StructArrays 830.0 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1267.6 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 873.9 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1323.8 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1049.3 ms ✓ LazyStack 2280.5 ms ✓ ZygoteRules 943.1 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 886.5 ms ✓ Distances → DistancesChainRulesCoreExt 2956.3 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1374.4 ms ✓ TransmuteDims 812.7 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2681.9 ms ✓ FilePathsBase → FilePathsBaseTestExt 897.2 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1246.0 ms ✓ FilePaths 1521.1 ms ✓ SortingAlgorithms 2731.7 ms ✓ QuadGK 9023.2 ms ✓ BioSequences 20852.0 ms ✓ Automa 3850.2 ms ✓ ArnoldiMethod 1371.5 ms ✓ StaticArrays → StaticArraysStatisticsExt 1658.9 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1369.9 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 5114.7 ms ✓ Rotations 1362.1 ms ✓ Adapt → AdaptStaticArraysExt 1434.0 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 2416.6 ms ✓ PairwiseListMatrices 13632.3 ms ✓ BioStructures 12742.0 ms ✓ JSON3 3655.1 ms ✓ JSON 10298.7 ms ✓ StaticArrayInterface 22315.5 ms ✓ GeometryBasics 1350.4 ms ✓ FreeType2_jll 1019.2 ms ✓ Isoband 1576.2 ms ✓ Rmath 4973.1 ms ✓ SpecialFunctions 1162.2 ms ✓ CRlibm 10487.5 ms ✓ MKL_jll 1510.3 ms ✓ OpenEXR_jll 1400.8 ms ✓ libvorbis_jll 1338.1 ms ✓ Pixman_jll 1054.2 ms ✓ StringEncodings 1374.1 ms ✓ XML2_jll 1372.3 ms ✓ GettextRuntime_jll 1936.9 ms ✓ MbedTLS 1450.9 ms ✓ Xorg_libxcb_jll 1372.7 ms ✓ Dbus_jll 1368.4 ms ✓ Wayland_jll 1459.1 ms ✓ Libtiff_jll 1357.6 ms ✓ libsixel_jll 5383.9 ms ✓ QOI 51297.9 ms ✓ TiffImages 1598.1 ms ✓ Animations 1313.6 ms ✓ Graphics 30204.4 ms ✓ ImageCore 8337.5 ms ✓ ColorSchemes 1288.1 ms ✓ StructArrays → StructArraysSparseArraysExt 819.0 ms ✓ StructArrays → StructArraysLinearAlgebraExt 783.8 ms ✓ StructArrays → StructArraysAdaptExt 1542.3 ms ✓ StructArrays → StructArraysStaticArraysExt 5014.7 ms ✓ StatsBase 3452.0 ms ✓ BioAlignments 21596.6 ms ✓ FASTX 4293.4 ms ✓ NearestNeighbors 9699.7 ms ✓ Graphs 1876.7 ms ✓ Rotations → RotationsRecipesBaseExt 3984.5 ms ✓ Interpolations 18778.8 ms ✓ TensorCast 1685.1 ms ✓ BioStructures → BioStructuresBioSequencesExt 3477.2 ms ✓ ColorBrewer 1017.6 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1567.5 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 3494.5 ms ✓ Packing 12275.4 ms ✓ GridLayoutBase 10609.2 ms ✓ MakieCore 11274.0 ms ✓ MeshIO 6121.3 ms ✓ ShaderAbstractions 1730.3 ms ✓ FreeType 1590.4 ms ✓ Fontconfig_jll 3847.1 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2376.7 ms ✓ HypergeometricFunctions 1262.0 ms ✓ DiffRules 1415.7 ms ✓ ColorVectorSpace → SpecialFunctionsExt 5043.5 ms ✓ IntervalArithmetic 6449.8 ms ✓ FFTW 5811.9 ms ✓ OpenEXR 2542.6 ms ✓ YAML 1036.7 ms ✓ LightXML 1639.4 ms ✓ Glib_jll 25290.4 ms ✓ HTTP 1461.3 ms ✓ Xorg_libX11_jll 4185.3 ms ✓ ImageBase 6971.8 ms ✓ PNGFiles 11505.5 ms ✓ Sixel 9491.5 ms ✓ JpegTurbo 1961.9 ms ✓ Colorfy 17773.4 ms ✓ PlotUtils 11671.9 ms ✓ ChainRules 1893.7 ms ✓ PDMats → StatsBaseExt 2356.3 ms ✓ FASTX → BioSequencesExt 3596.1 ms ✓ Interpolations → InterpolationsUnitfulExt 1916.6 ms ✓ BioStructures → BioStructuresBioAlignmentsExt 1242.4 ms ✓ TiledIteration 7866.6 ms ✓ FreeTypeAbstraction 2908.1 ms ✓ StatsFuns 6484.5 ms ✓ ForwardDiff 1449.6 ms ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 1800.5 ms ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt 1269.3 ms ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 1010.0 ms ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt 1027.9 ms ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 958.85s ################################################################################ # Testing # Testing BioMakie Status `/tmp/jl_KSGP7x/Project.toml` [7de43156] BioMakie v0.4.4 [de9282ab] BioStructures v4.7.0 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 ⌅ [e9467ef8] GLMakie v0.11.11 [a09fc81d] ImageCore v0.10.5 ⌃ [51bafb47] MIToS v3.2.3 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_KSGP7x/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [15f4f7f2] AutoHashEquals v2.2.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [0e736298] Bessels v0.2.8 [00701ae9] BioAlignments v3.1.0 [47718e42] BioGenerics v0.1.5 [7de43156] BioMakie v0.4.4 [7e6ae17a] BioSequences v3.5.0 [de9282ab] BioStructures v4.7.0 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [7a955b69] CircularArrays v1.4.0 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [03fe91ce] Colorfy v1.1.2 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 ⌅ [b46f11dc] CoordRefSystems v0.18.10 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [e7dc6d0d] DataValues v0.4.13 [927a84f5] DelaunayTriangulation v1.6.5 [8bb1440f] DelimitedFiles v1.9.1 [85a47980] Dictionaries v0.4.5 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.9 [460bff9d] ExceptionUnwrapping v0.1.11 [411431e0] Extents v0.1.6 [c2308a5c] FASTX v2.1.7 [7a1cc6ca] FFTW v1.10.0 [a0c94c4b] FastaIO v1.1.0 [5789e2e9] FileIO v1.17.1 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.2.2 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [f7f18e0c] GLFW v3.4.5 ⌅ [e9467ef8] GLMakie v0.11.11 [46192b85] GPUArraysCore v0.2.0 [92fee26a] GZip v0.6.2 [5c1252a2] GeometryBasics v0.5.10 [a2bd30eb] Graphics v1.1.3 [86223c79] Graphs v1.13.1 [3955a311] GridLayoutBase v0.11.2 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [47d2ed2b] Hyperscript v0.0.5 [7869d1d1] IRTools v0.4.15 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [4e3cecfd] ImageShow v0.3.8 [313cdc1a] Indexing v1.1.1 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 ⌅ [a98d9a8b] Interpolations v0.15.1 [d1acc4aa] IntervalArithmetic v1.0.1 [8197267c] IntervalSets v0.7.11 [524e6230] IntervalTrees v1.1.0 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.10 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [8cdb02fc] LazyModules v0.3.1 [1fad7336] LazyStack v0.1.3 [9c8b4983] LightXML v0.9.3 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 ⌃ [51bafb47] MIToS v3.2.3 [1914dd2f] MacroTools v0.5.16 ⌅ [ee78f7c6] Makie v0.22.10 ⌅ [20f20a25] MakieCore v0.9.5 [dbb5928d] MappedArrays v0.4.2 [0a4f8689] MathTeXEngine v0.6.7 [739be429] MbedTLS v1.1.9 [7269a6da] MeshIO v0.5.3 ⌅ [eacbb407] Meshes v0.53.30 [e1d29d7a] Missings v1.2.0 [66fc600b] ModernGL v1.1.8 ⌅ [6c89ec66] MolecularGraph v0.18.0 [e94cdb99] MosaicViews v0.3.4 [77ba4419] NaNMath v1.1.3 [86f7a689] NamedArrays v0.10.5 [b8a86587] NearestNeighbors v0.4.22 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [4d8831e6] OpenSSL v1.6.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [f57f5aa1] PNGFiles v0.4.4 [65ce6f38] PackageExtensionCompat v1.0.2 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [f9da4da7] PairwiseListMatrices v0.11.1 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.4 [647866c9] PolygonOps v0.1.2 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.1 [1fd47b50] QuadGK v2.11.2 [94ee1d12] Quaternions v0.7.6 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [6038ab10] Rotations v1.7.1 [5eaf0fd0] RoundingEmulator v0.2.1 [fdea26ae] SIMD v3.7.2 [431bcebd] SciMLPublic v1.0.0 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [65257c39] ShaderAbstractions v0.5.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [45858cf5] Sixel v0.1.5 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [03a91e81] SplitApplyCombine v1.2.3 [860ef19b] StableRNGs v1.0.3 [cae243ae] StackViews v0.1.2 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.7 [4c63d2b9] StatsFuns v1.5.2 [5e0ebb24] Strided v2.3.2 [4db3bf67] StridedViews v0.4.1 [69024149] StringEncodings v0.3.7 [354b36f9] StringViews v1.3.5 [09ab397b] StructArrays v0.7.2 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [382cd787] TableTraitsUtils v1.0.2 [bd369af6] Tables v1.12.1 [02d47bb6] TensorCast v0.4.9 [62fd8b95] TensorCore v0.1.1 [731e570b] TiffImages v0.11.6 [06e1c1a7] TiledIteration v0.5.0 [3bb67fe8] TranscodingStreams v0.11.3 [28dd2a49] TransformsBase v1.6.0 [24ddb15e] TransmuteDims v0.1.17 [981d1d27] TriplotBase v0.1.0 [9d95972d] TupleTools v1.6.0 [7200193e] Twiddle v1.1.2 [5c2747f8] URIs v1.6.1 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.25.1 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.0.0 [ddb6d928] YAML v0.4.15 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.5+0 [ee1fde0b] Dbus_jll v1.16.2+0 [5ae413db] EarCut_jll v2.2.4+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 ⌅ [b22a6f82] FFMPEG_jll v6.1.3+0 [f5851436] FFTW_jll v3.3.11+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [0656b61e] GLFW_jll v3.4.0+2 [b0724c58] GettextRuntime_jll v0.22.4+0 [59f7168a] Giflib_jll v5.2.3+0 [7746bdde] Glib_jll v2.86.0+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [905a6f67] Imath_jll v3.1.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.3+0 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [856f044c] MKL_jll v2025.2.0+0 [c8ffd9c3] MbedTLS_jll v2.28.10+0 [e7412a2a] Ogg_jll v1.3.6+0 [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] OpenEXR_jll v3.2.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.5.2+0 [36c8627f] Pango_jll v1.56.4+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 [a2964d1f] Wayland_jll v1.24.0+0 [02c8fc9c] XML2_jll v2.15.1+0 [ffd25f8a] XZ_jll v5.8.1+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [935fb764] Xorg_libXcursor_jll v1.2.4+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [d091e8ba] Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.6+0 [ec84b674] Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.1.3+0 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [f6050b86] coordgenlibs_jll v3.0.2+0 [9a68df92] isoband_jll v0.2.3+0 [a4ae2306] libaom_jll v3.13.1+0 [0ac62f75] libass_jll v0.17.4+0 [1183f4f0] libdecor_jll v0.2.2+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [172afb32] libinchi_jll v1.6.0+0 [b53b4c65] libpng_jll v1.6.50+0 [075b6546] libsixel_jll v1.10.5+0 [f27f6e37] libvorbis_jll v1.3.8+0 [c5f90fcd] libwebp_jll v1.6.0+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [d8fb68d0] xkbcommon_jll v1.9.2+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: Inconsistent dictionary sizes Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] NamedArray @ ~/.julia/packages/NamedArrays/f1tMK/src/namedarraytypes.jl:71 [inlined] [3] NamedArray @ ~/.julia/packages/NamedArrays/f1tMK/src/constructors.jl:43 [inlined] [4] macro expansion @ ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:249 [inlined] [5] MIToS.Information.ContingencyTable{Float64, 2, MIToS.MSA.UngappedAlphabet}(alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:235 [6] ContingencyTable @ ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:260 [inlined] [7] MIToS.Information.ContingencyTable(matrix::Matrix{Float64}, alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:266 [8] top-level scope @ ~/.julia/packages/MIToS/zY3IT/src/Information/BLOSUM62.jl:35 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ ~/.julia/packages/MIToS/zY3IT/src/Information/Information.jl:113 [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ ~/.julia/packages/MIToS/zY3IT/src/MIToS.jl:7 [13] include(mod::Module, _path::String) @ Base ./Base.jl:309 [14] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [16] macro expansion @ ./loading.jl:2504 [inlined] [17] macro expansion @ ./lock.jl:376 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [19] require @ ./loading.jl:2444 [inlined] [20] eval_import_path @ ./module.jl:36 [inlined] [21] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [22] _eval_using @ ./module.jl:137 [inlined] [23] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [24] top-level scope @ ~/.julia/packages/BioMakie/8NfoU/test/runtests.jl:7 [25] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [26] top-level scope @ none:6 [27] eval(m::Module, e::Any) @ Core ./boot.jl:489 [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [29] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/Information/BLOSUM62.jl:35 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/Information/Information.jl:1 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/MIToS.jl:1 in expression starting at /home/pkgeval/.julia/packages/BioMakie/8NfoU/test/runtests.jl:1 Testing failed after 41.55s ERROR: LoadError: Package BioMakie errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1077.27s: package tests unexpectedly errored