Package evaluation to test TopologicalNumbers on Julia 1.14.0-DEV.30 (073666df8b*) started at 2025-11-04T17:42:14.860 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv, BugReporting)... Set-up completed after 14.31s ################################################################################ # Installation # Installing TopologicalNumbers... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [82b459e2] + TopologicalNumbers v1.7.7 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [a33af91c] + CompositionsBase v0.1.2 [992eb4ea] + CondaPkg v0.2.33 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [53c48c17] + FixedPointNumbers v0.8.5 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [1914dd2f] + MacroTools v0.5.16 [0b3b1443] + MicroMamba v0.1.14 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [49802e3a] + ProgressBars v1.5.1 [6099a3de] + PythonCall v0.9.28 [274fc56d] + PythonPlot v1.0.6 [189a3867] + Reexport v1.2.2 [6c6a2e73] + Scratch v1.3.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [82b459e2] + TopologicalNumbers v1.7.7 [3a884ed6] + UnPack v1.0.2 [e17b2a0c] + UnsafePointers v1.0.0 [81def892] + VersionParsing v1.3.0 ⌅ [f8abcde7] + micromamba_jll v1.5.12+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 3.68s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6168.1 ms ✓ BugReporting 1 dependency successfully precompiled in 7 seconds. 72 already precompiled. ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 76023.7 ms ✓ TopologicalNumbers 1 dependency successfully precompiled in 77 seconds. 84 already precompiled. 1 dependency had output during precompilation: ┌ TopologicalNumbers │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/TopologicalNumbers/E03Px/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/mkWc2/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonPlot/oS8x4/CondaPkg.toml │ CondaPkg Resolving changes │ + matplotlib │ + openssl │ + python │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ init │ │ --format pixi │ └ /home/pkgeval/.julia/environments/v1.14/.CondaPkg │ ✔ Created /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml │ CondaPkg Wrote /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml │ │ [dependencies] │ │ openssl = ">=3, <3.6" │ │ matplotlib = ">=1" │ │ │ │ [dependencies.python] │ │ version = ">=3.9,<4" │ │ build = "*cp*" │ │ channel = "conda-forge" │ │ │ │ [project] │ │ name = ".CondaPkg" │ │ description = "automatically generated by CondaPkg.jl" │ │ platforms = ["linux-64"] │ │ channel-priority = "strict" │ └ channels = ["conda-forge"] │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ install │ └ --manifest-path /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. └ Precompilation completed after 90.01s ################################################################################ # Testing # Testing TopologicalNumbers Status `/tmp/jl_P7Ianh/Project.toml` ⌅ [4c88cf16] Aqua v0.6.7 [992eb4ea] CondaPkg v0.2.33 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [da04e1cc] MPI v0.20.23 [6099a3de] PythonCall v0.9.28 [274fc56d] PythonPlot v1.0.6 [82b459e2] TopologicalNumbers v1.7.7 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_P7Ianh/Manifest.toml` [7d9f7c33] Accessors v0.1.42 ⌅ [4c88cf16] Aqua v0.6.7 [00ebfdb7] CSTParser v3.4.3 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 ⌅ [a80b9123] CommonMark v0.8.16 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [992eb4ea] CondaPkg v0.2.33 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.5 [53c48c17] FixedPointNumbers v0.8.5 [c27321d9] Glob v1.3.1 [3587e190] InverseFunctions v0.1.17 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [b964fa9f] LaTeXStrings v1.4.0 [da04e1cc] MPI v0.20.23 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [0b3b1443] MicroMamba v0.1.14 [bac558e1] OrderedCollections v1.8.1 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [eebad327] PkgVersion v0.3.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [49802e3a] ProgressBars v1.5.1 [6099a3de] PythonCall v0.9.28 [274fc56d] PythonPlot v1.0.6 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.3.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [0796e94c] Tokenize v0.5.29 [82b459e2] TopologicalNumbers v1.7.7 [3a884ed6] UnPack v1.0.2 [e17b2a0c] UnsafePointers v1.0.0 [81def892] VersionParsing v1.3.0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Activating project at `~/.julia/environments/pkgeval` Activating project at `/tmp/jl_P7Ianh` Switching execution to under rr CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/TopologicalNumbers/E03Px/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/mkWc2/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonPlot/oS8x4/CondaPkg.toml CondaPkg Resolving changes + matplotlib + openssl + python CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_P7Ianh/.CondaPkg ✔ Created /tmp/jl_P7Ianh/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_P7Ianh/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ matplotlib = ">=1" │ │ [dependencies.python] │ version = ">=3.9,<4" │ build = "*cp*" │ channel = "conda-forge" │ │ [project] │ name = ".CondaPkg" │ description = "automatically generated by CondaPkg.jl" │ platforms = ["linux-64"] │ channel-priority = "strict" └ channels = ["conda-forge"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_P7Ianh/.CondaPkg/pixi.toml ✔ The default environment has been installed. Fatal Python error: _Py_CheckRecursiveCall: Unrecoverable stack overflow (used -797274 kB) in comparison Python runtime state: initialized Current thread 0x00007373cff8e440 [julia] (most recent call first): Extension modules: numpy._core._multiarray_umath, numpy.linalg._umath_linalg, PIL._imaging, kiwisolver._cext, shiboken6.Shiboken, PySide6.QtCore, PySide6.QtGui, PySide6.QtWidgets (total: 8) [234] signal 6 (-6): Aborted in expression starting at /home/pkgeval/.julia/packages/TopologicalNumbers/E03Px/test/runtests.jl:10 unknown function (ip: 0x7373d003cebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) fatal_error_exit at /usr/local/src/conda/python-3.14.0/Python/pylifecycle.c:3250 [inlined] fatal_error at /usr/local/src/conda/python-3.14.0/Python/pylifecycle.c:3396 _Py_FatalErrorFunc at /usr/local/src/conda/python-3.14.0/Python/pylifecycle.c:3482 _Py_CheckRecursiveCall at /usr/local/src/conda/python-3.14.0/Python/ceval.c:491 _Py_EnterRecursiveCallTstate at /usr/local/src/conda/python-3.14.0/Include/internal/pycore_ceval.h:216 [inlined] method_enter_call at /usr/local/src/conda/python-3.14.0/Objects/descrobject.c:300 [inlined] method_vectorcall_NOARGS at /usr/local/src/conda/python-3.14.0/Objects/descrobject.c:444 _PyObject_VectorcallTstate at /usr/local/src/conda/python-3.14.0/Include/internal/pycore_call.h:169 [inlined] PyObject_VectorcallMethod at /usr/local/src/conda/python-3.14.0/Objects/call.c:856 PyObject_CallMethodNoArgs at /usr/local/src/conda/python-3.14.0/Include/cpython/abstract.h:65 [inlined] _PyFile_Flush at /usr/local/src/conda/python-3.14.0/Objects/fileobject.c:542 flush_std_files at /usr/local/src/conda/python-3.14.0/Python/pylifecycle.c:1915 fatal_error at /usr/local/src/conda/python-3.14.0/Python/pylifecycle.c:3459 _Py_FatalErrorFunc at /usr/local/src/conda/python-3.14.0/Python/pylifecycle.c:3482 _Py_CheckRecursiveCall at /usr/local/src/conda/python-3.14.0/Python/ceval.c:491 _Py_EnterRecursiveCallTstate at /usr/local/src/conda/python-3.14.0/Include/internal/pycore_ceval.h:216 [inlined] PyObject_RichCompare at /usr/local/src/conda/python-3.14.0/Objects/object.c:1105 PyObject_RichCompare at /home/pkgeval/.julia/packages/PythonCall/mkWc2/src/C/pointers.jl:300 [inlined] macro expansion at /home/pkgeval/.julia/packages/PythonCall/mkWc2/src/Core/Py.jl:118 [inlined] pyne at /home/pkgeval/.julia/packages/PythonCall/mkWc2/src/Core/builtins.jl:234 != at /home/pkgeval/.julia/packages/PythonCall/mkWc2/src/Core/Py.jl:338 [inlined] #Tk_eventloop##0 at /home/pkgeval/.julia/packages/PythonPlot/oS8x4/src/pygui.jl:199 #632 at ./asyncevent.jl:370 unknown function (ip: 0x7373a0e3443f) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1281 Allocations: 30214499 (Pool: 30214248; Big: 251); GC: 17 Testing failed after 198.84s ERROR: LoadError: Package TopologicalNumbers errored during testing (received signal: 6) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:217 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval crashed after 423.3s: the process was aborted ################################################################################ # Bug reporting # ┌ Warning: attempting to remove probably stale pidfile │ path = "/home/pkgeval/.julia/logs/manifest_usage.toml.pid" └ @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.14/FileWatching/src/pidfile.jl:301 Finalizing trace... BugReporting completed after 47.14s Uploaded rr trace to https://s3.amazonaws.com/julialang-reports/nanosoldier/pkgeval/rr/TopologicalNumbers-1762260611.tar.zst