Package evaluation to test SparseKmeansFeatureRanking on Julia 1.14.0-DEV.30 (073666df8b*) started at 2025-11-04T21:34:38.023


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.83s


################################################################################
# Installation
#

Installing SparseKmeansFeatureRanking...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [a6138be3] + SparseKmeansFeatureRanking v0.1.2
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [79e6a3ab] + Adapt v4.4.0
  [66dad0bd] + AliasTables v1.1.3
  [4fba245c] + ArrayInterface v7.22.0
  [67c07d97] + Automa v1.1.0
  [28d598bf] + BGZFStreams v0.3.2
  [47718e42] + BioGenerics v0.1.5
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [e1450e63] + BufferedStreams v1.2.2
  [2a0fbf3d] + CPUSummary v0.2.7
  [336ed68f] + CSV v0.10.15
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [523fee87] + CodecBzip2 v0.8.5
  [ba30903b] + CodecXz v0.7.4
  [944b1d66] + CodecZlib v0.7.8
  [6b39b394] + CodecZstd v0.8.6
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.18.1
  [adafc99b] + CpuId v0.3.1
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.1
  [864edb3b] + DataStructures v0.19.2
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [b552c78f] + DiffRules v1.15.1
  [b4f34e82] + Distances v0.10.12
  [ffbed154] + DocStringExtensions v0.9.5
  [48062228] + FilePathsBase v0.9.24
  [c27321d9] + Glob v1.3.1
  [3e5b6fbb] + HostCPUFeatures v0.1.17
  [615f187c] + IfElse v0.1.1
  [842dd82b] + InlineStrings v1.4.5
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.6
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [b964fa9f] + LaTeXStrings v1.4.0
  [10f19ff3] + LayoutPointers v0.1.17
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [bdcacae8] + LoopVectorization v0.12.173
  [d125e4d3] + ManualMemory v0.1.8
  [e1d29d7a] + Missings v1.2.0
  [77ba4419] + NaNMath v1.1.3
  [6fe1bfb0] + OffsetArrays v1.17.0
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
  [1d0040c9] + PolyesterWeave v0.2.2
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [08abe8d2] + PrettyTables v3.1.0
  [43287f4e] + PtrArrays v1.3.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [fdea26ae] + SIMD v3.7.2
  [94e857df] + SIMDTypes v0.1.0
  [476501e8] + SLEEFPirates v0.6.43
  [431bcebd] + SciMLPublic v1.0.0
  [91c51154] + SentinelArrays v1.4.8
  [4e780e97] + SnpArrays v0.3.22
  [a2af1166] + SortingAlgorithms v1.2.2
  [a6138be3] + SparseKmeansFeatureRanking v0.1.2
  [276daf66] + SpecialFunctions v2.6.1
  [aedffcd0] + Static v1.3.1
  [0d7ed370] + StaticArrayInterface v1.8.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.7
  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [8290d209] + ThreadingUtilities v0.5.5
⌅ [3bb67fe8] + TranscodingStreams v0.9.13
  [bc48ee85] + Tullio v0.3.8
  [3a884ed6] + UnPack v1.0.2
  [28eba6e3] + VariantCallFormat v0.5.9
  [3d5dd08c] + VectorizationBase v0.21.72
  [ea10d353] + WeakRefStrings v1.4.2
  [76eceee3] + WorkerUtilities v1.6.1
  [6e34b625] + Bzip2_jll v1.0.9+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [ffd25f8a] + XZ_jll v5.8.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.1s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   1647.9 ms  ✓ BioGenerics
   1724.5 ms  ✓ CodecBzip2


Precompilation completed after 29.92s


################################################################################
# Testing
#

     Testing SparseKmeansFeatureRanking
      Status `/tmp/jl_mgP3hp/Project.toml`
  [6e4b80f9] BenchmarkTools v1.6.3
  [8bb1440f] DelimitedFiles v1.9.1
  [b4f34e82] Distances v0.10.12
  [e1d29d7a] Missings v1.2.0
  [4e780e97] SnpArrays v0.3.22
  [a6138be3] SparseKmeansFeatureRanking v0.1.2
  [10745b16] Statistics v1.11.1
  [2913bbd2] StatsBase v0.34.7
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_mgP3hp/Manifest.toml`
  [79e6a3ab] Adapt v4.4.0
  [66dad0bd] AliasTables v1.1.3
  [4fba245c] ArrayInterface v7.22.0
  [67c07d97] Automa v1.1.0
  [28d598bf] BGZFStreams v0.3.2
  [6e4b80f9] BenchmarkTools v1.6.3
  [47718e42] BioGenerics v0.1.5
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [e1450e63] BufferedStreams v1.2.2
  [2a0fbf3d] CPUSummary v0.2.7
  [336ed68f] CSV v0.10.15
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [523fee87] CodecBzip2 v0.8.5
  [ba30903b] CodecXz v0.7.4
  [944b1d66] CodecZlib v0.7.8
  [6b39b394] CodecZstd v0.8.6
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.18.1
  [adafc99b] CpuId v0.3.1
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.8.1
  [864edb3b] DataStructures v0.19.2
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [b552c78f] DiffRules v1.15.1
  [b4f34e82] Distances v0.10.12
  [ffbed154] DocStringExtensions v0.9.5
  [48062228] FilePathsBase v0.9.24
  [c27321d9] Glob v1.3.1
  [3e5b6fbb] HostCPUFeatures v0.1.17
  [615f187c] IfElse v0.1.1
  [842dd82b] InlineStrings v1.4.5
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.6
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.1
  [682c06a0] JSON v1.2.0
  [b964fa9f] LaTeXStrings v1.4.0
  [10f19ff3] LayoutPointers v0.1.17
  [2ab3a3ac] LogExpFunctions v0.3.29
  [bdcacae8] LoopVectorization v0.12.173
  [d125e4d3] ManualMemory v0.1.8
  [e1d29d7a] Missings v1.2.0
  [77ba4419] NaNMath v1.1.3
  [6fe1bfb0] OffsetArrays v1.17.0
  [bac558e1] OrderedCollections v1.8.1
  [69de0a69] Parsers v2.8.3
  [1d0040c9] PolyesterWeave v0.2.2
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [08abe8d2] PrettyTables v3.1.0
  [43287f4e] PtrArrays v1.3.0
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [fdea26ae] SIMD v3.7.2
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
  [431bcebd] SciMLPublic v1.0.0
  [91c51154] SentinelArrays v1.4.8
  [4e780e97] SnpArrays v0.3.22
  [a2af1166] SortingAlgorithms v1.2.2
  [a6138be3] SparseKmeansFeatureRanking v0.1.2
  [276daf66] SpecialFunctions v2.6.1
  [aedffcd0] Static v1.3.1
  [0d7ed370] StaticArrayInterface v1.8.0
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
  [2913bbd2] StatsBase v0.34.7
  [892a3eda] StringManipulation v0.4.1
  [ec057cc2] StructUtils v2.5.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [8290d209] ThreadingUtilities v0.5.5
⌅ [3bb67fe8] TranscodingStreams v0.9.13
  [bc48ee85] Tullio v0.3.8
  [3a884ed6] UnPack v1.0.2
  [28eba6e3] VariantCallFormat v0.5.9
  [3d5dd08c] VectorizationBase v0.21.72
  [ea10d353] WeakRefStrings v1.4.2
  [76eceee3] WorkerUtilities v1.6.1
  [6e34b625] Bzip2_jll v1.0.9+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [ffd25f8a] XZ_jll v5.8.1+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [de0858da] Printf v1.11.0
  [9abbd945] Profile v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48
  [2] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [3] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2817
  [4] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2576
  [5] macro expansion
    @ ./loading.jl:2504 [inlined]
  [6] macro expansion
    @ ./lock.jl:376 [inlined]
  [7] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [8] require
    @ ./loading.jl:2444 [inlined]
  [9] eval_import_path
    @ ./module.jl:36 [inlined]
 [10] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [11] _eval_using
    @ ./module.jl:137 [inlined]
 [12] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [13] top-level scope
    @ ~/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:5
 [14] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [15] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2817
 [16] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2576
 [17] macro expansion
    @ ./loading.jl:2504 [inlined]
 [18] macro expansion
    @ ./lock.jl:376 [inlined]
 [19] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
 [20] require
    @ ./loading.jl:2444 [inlined]
 [21] eval_import_path
    @ ./module.jl:36 [inlined]
 [22] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [23] _eval_using
    @ ./module.jl:137 [inlined]
 [24] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [25] top-level scope
    @ ~/.julia/packages/SparseKmeansFeatureRanking/xOMjS/test/runtests.jl:1
 [26] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [27] top-level scope
    @ none:6
 [28] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [29] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:310
 [30] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3
in expression starting at /home/pkgeval/.julia/packages/SparseKmeansFeatureRanking/xOMjS/src/SparseKmeansFeatureRanking.jl:1
in expression starting at /home/pkgeval/.julia/packages/SparseKmeansFeatureRanking/xOMjS/test/runtests.jl:1

Testing failed after 147.56s

ERROR: LoadError: Package SparseKmeansFeatureRanking errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 208.6s: package tests unexpectedly errored