Package evaluation to test Nucleotide_Essentials on Julia 1.14.0-DEV.30 (073666df8b*) started at 2025-11-05T02:59:42.106 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.07s ################################################################################ # Installation # Installing Nucleotide_Essentials... Resolving package versions... Installed libass_jll ─────────────────── v0.17.4+0 Installed Bzip2_jll ──────────────────── v1.0.9+0 Installed libaom_jll ─────────────────── v3.13.1+0 Installed Formatting ─────────────────── v0.4.3 Installed Libuuid_jll ────────────────── v2.41.2+0 Installed HarfBuzz_jll ───────────────── v8.5.1+0 Installed Glob ───────────────────────── v1.3.1 Installed MKL_jll ────────────────────── v2025.2.0+0 Installed MultivariateStats ──────────── v0.9.0 Installed InlineStrings ──────────────── v1.4.5 Installed NearestNeighbors ───────────── v0.4.22 Installed Libtiff_jll ────────────────── v4.4.0+0 Installed PlotThemes ─────────────────── v3.3.0 Installed SentinelArrays ─────────────── v1.4.8 Installed FileIO ─────────────────────── v1.17.1 Installed Cairo_jll ──────────────────── v1.18.5+0 Installed Xorg_libXinerama_jll ───────── v1.1.6+0 Installed Graphite2_jll ──────────────── v1.3.15+0 Installed OrderedCollections ─────────── v1.8.1 Installed pprof_jll ──────────────────── v1.0.1+0 Installed libsass_jll ────────────────── v3.6.6+0 Installed fzf_jll ────────────────────── v0.61.1+0 Installed OpenSpecFun_jll ────────────── v0.5.6+0 Installed NaNMath ────────────────────── v1.1.3 Installed Widgets ────────────────────── v0.6.7 Installed Distances ──────────────────── v0.10.12 Installed Fontconfig_jll ─────────────── v2.17.1+0 Installed QuadGK ─────────────────────── v2.11.2 Installed Opus_jll ───────────────────── v1.5.2+0 Installed Ogg_jll ────────────────────── v1.3.6+0 Installed EnumX ──────────────────────── v1.0.5 Installed Arpack ─────────────────────── v0.5.4 Installed Unzip ──────────────────────── v0.2.0 Installed Xorg_xcb_util_wm_jll ───────── v0.4.2+0 Installed Reexport ───────────────────── v1.2.2 Installed Xorg_libxcb_jll ────────────── v1.17.1+0 Installed FFMPEG ─────────────────────── v0.4.5 Installed WoodburyMatrices ───────────── v0.5.6 Installed LZO_jll ────────────────────── v2.10.3+0 Installed Tables ─────────────────────── v1.12.1 Installed Preferences ────────────────── v1.5.0 Installed Missings ───────────────────── v1.2.0 Installed LaTeXStrings ───────────────── v1.4.0 Installed Crayons ────────────────────── v4.1.1 Installed SortingAlgorithms ──────────── v1.2.2 Installed Grisu ──────────────────────── v1.0.2 Installed LERC_jll ───────────────────── v3.0.0+1 Installed TableTraits ────────────────── v1.0.1 Installed LLVMOpenMP_jll ─────────────── v18.1.8+0 Installed Qt5Base_jll ────────────────── v5.15.3+2 Installed MacroTools ─────────────────── v0.5.16 Installed EpollShim_jll ──────────────── v0.0.20230411+1 Installed DataStructures ─────────────── v0.18.22 Installed URIs ───────────────────────── v1.6.1 Installed OpenSSH_jll ────────────────── v10.2.1+0 Installed oneTBB_jll ─────────────────── v2022.0.0+1 Installed DelimitedFiles ─────────────── v1.9.1 Installed AbstractTrees ──────────────── v0.4.5 Installed Xorg_xcb_util_jll ──────────── v0.4.1+0 Installed FillArrays ─────────────────── v1.14.0 Installed Graphviz_jll ───────────────── v2.50.0+1 Installed Sass ───────────────────────── v0.2.0 Installed UnicodeFun ─────────────────── v0.4.1 Installed x264_jll ───────────────────── v10164.0.1+0 Installed CodecZlib ──────────────────── v0.7.8 Installed Observables ────────────────── v0.5.5 Installed StatsBase ──────────────────── v0.33.21 Installed Xorg_libXau_jll ────────────── v1.0.13+0 Installed IntelOpenMP_jll ────────────── v2025.2.0+0 Installed LoggingExtras ──────────────── v1.2.0 Installed Xorg_libXfixes_jll ─────────── v6.0.2+0 Installed DataValueInterfaces ────────── v1.0.0 Installed Clustering ─────────────────── v0.14.4 Installed Libffi_jll ─────────────────── v3.4.7+0 Installed Expat_jll ──────────────────── v2.7.3+0 Installed Pixman_jll ─────────────────── v0.44.2+0 Installed IrrationalConstants ────────── v0.2.6 Installed libdecor_jll ───────────────── v0.2.2+0 Installed Contour ────────────────────── v0.6.3 Installed ColorVectorSpace ───────────── v0.11.0 Installed StableRNGs ─────────────────── v1.0.3 Installed HTTP ───────────────────────── v1.10.19 Installed Xorg_libXcursor_jll ────────── v1.2.4+0 Installed Xorg_xcb_util_keysyms_jll ──── v0.4.1+0 Installed libpng_jll ─────────────────── v1.6.50+0 Installed BitFlags ───────────────────── v0.1.9 Installed DataValues ─────────────────── v0.4.13 Installed LeftChildRightSiblingTrees ─── v0.2.1 Installed libfdk_aac_jll ─────────────── v2.0.4+0 Installed IOCapture ──────────────────── v0.2.5 Installed BufferedStreams ────────────── v1.2.2 Installed Scratch ────────────────────── v1.3.0 Installed FFMPEG_jll ─────────────────── v8.0.0+0 Installed SimpleBufferStream ─────────── v1.2.0 Installed PooledArrays ───────────────── v1.4.3 Installed WorkerUtilities ────────────── v1.6.1 Installed PDMats ─────────────────────── v0.11.35 Installed DocStringExtensions ────────── v0.9.5 Installed BenchmarkTools ─────────────── v1.6.3 Installed Rmath_jll ──────────────────── v0.5.1+0 Installed RelocatableFolders ─────────── v1.0.1 Installed TableOperations ────────────── v1.2.0 Installed KernelDensity ──────────────── v0.6.10 Installed AliasTables ────────────────── v1.1.3 Installed JLFzf ──────────────────────── v0.1.11 Installed ConcurrentUtilities ────────── v2.5.0 Installed Plots ──────────────────────── v1.35.0 Installed Git_LFS_jll ────────────────── v3.7.0+0 Installed DataAPI ────────────────────── v1.16.0 Installed RecipesBase ────────────────── v1.3.4 Installed IteratorInterfaceExtensions ── v1.0.0 Installed Wayland_jll ────────────────── v1.24.0+0 Installed InvertedIndices ────────────── v1.3.1 Installed Xorg_libXi_jll ─────────────── v1.8.3+0 Installed Colors ─────────────────────── v0.13.1 Installed Measures ───────────────────── v0.3.3 Installed StaticArraysCore ───────────── v1.4.4 Installed Documenter ─────────────────── v0.27.25 Installed Xorg_libxkbfile_jll ────────── v1.1.3+0 Installed AbstractFFTs ───────────────── v1.5.0 Installed StaticArrays ───────────────── v1.9.15 Installed Libglvnd_jll ───────────────── v1.7.1+1 Installed Latexify ───────────────────── v0.15.21 Installed ColorTypes ─────────────────── v0.12.1 Installed StringManipulation ─────────── v0.4.1 Installed Xorg_xkbcomp_jll ───────────── v1.4.7+0 Installed AxisAlgorithms ─────────────── v1.0.1 Installed Requires ───────────────────── v1.3.1 Installed LogExpFunctions ────────────── v0.3.29 Installed CSV ────────────────────────── v0.10.15 Installed Glib_jll ───────────────────── v2.86.0+0 Installed DataFramesMeta ─────────────── v0.11.0 Installed Interpolations ─────────────── v0.13.6 Installed Git_jll ────────────────────── v2.51.3+0 Installed JSON ───────────────────────── v0.21.4 Installed Arpack_jll ─────────────────── v3.5.1+1 Installed Parsers ────────────────────── v2.8.3 Installed DocumenterTools ────────────── v0.1.21 Installed PrettyTables ───────────────── v3.1.0 Installed Distributions ──────────────── v0.25.122 Installed Xorg_xcb_util_renderutil_jll ─ v0.3.10+0 Installed Rmath ──────────────────────── v0.9.0 Installed StatsFuns ──────────────────── v1.5.2 Installed StatsPlots ─────────────────── v0.14.34 Installed x265_jll ───────────────────── v4.1.0+0 Installed WeakRefStrings ─────────────── v1.4.2 Installed Xorg_libXdmcp_jll ──────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ──── v2.44.0+0 Installed DataFrames ─────────────────── v1.8.1 Installed JLLWrappers ────────────────── v1.7.1 Installed ColorSchemes ───────────────── v3.31.0 Installed Xorg_xtrans_jll ────────────── v1.6.0+0 Installed Pango_jll ──────────────────── v1.56.4+0 Installed GR_jll ─────────────────────── v0.69.1+0 Installed SnoopPrecompile ────────────── v1.0.3 Installed RecipesPipeline ────────────── v0.5.2 Installed FilePathsBase ──────────────── v0.9.24 Installed FlameGraphs ────────────────── v1.1.0 Installed HypergeometricFunctions ────── v0.3.28 Installed Gumbo_jll ──────────────────── v0.10.2+0 Installed ExceptionUnwrapping ────────── v0.1.11 Installed TranscodingStreams ─────────── v0.11.3 Installed Libmount_jll ───────────────── v2.41.2+0 Installed JpegTurbo_jll ──────────────── v3.1.3+0 Installed Dbus_jll ───────────────────── v1.16.2+0 Installed PlotUtils ──────────────────── v1.4.3 Installed StatsAPI ───────────────────── v1.7.1 Installed Xorg_libX11_jll ────────────── v1.8.12+0 Installed Compat ─────────────────────── v4.18.1 Installed PrecompileTools ────────────── v1.3.3 Installed TensorCore ─────────────────── v0.1.1 Installed Statistics ─────────────────── v1.11.1 Installed ProgressMeter ──────────────── v1.11.0 Installed OpenSSL ────────────────────── v1.6.0 Installed MbedTLS ────────────────────── v1.1.9 Installed OffsetArrays ───────────────── v1.17.0 Installed Xorg_xcb_util_image_jll ────── v0.4.1+0 Installed ProtoBuf ───────────────────── v1.2.0 Installed Nucleotide_Essentials ──────── v0.2.1 Installed Ratios ─────────────────────── v0.4.5 Installed ChainRulesCore ─────────────── v1.26.0 Installed FriBidi_jll ────────────────── v1.0.17+0 Installed xkbcommon_jll ──────────────── v1.9.2+0 Installed GettextRuntime_jll ─────────── v0.22.4+0 Installed LAME_jll ───────────────────── v3.100.3+0 Installed libvorbis_jll ──────────────── v1.3.8+0 Installed PtrArrays ──────────────────── v1.3.0 Installed GLFW_jll ───────────────────── v3.4.0+2 Installed Git ────────────────────────── v1.5.0 Installed Xorg_libXrender_jll ────────── v0.9.12+0 Installed SpecialFunctions ───────────── v2.6.1 Installed Showoff ────────────────────── v1.0.3 Installed FFTW ───────────────────────── v1.10.0 Installed FFTW_jll ───────────────────── v3.3.11+0 Installed Gumbo ──────────────────────── v0.8.3 Installed FixedPointNumbers ──────────── v0.8.5 Installed FreeType2_jll ──────────────── v2.13.4+0 Installed MbedTLS_jll ────────────────── v2.28.10+0 Installed Libiconv_jll ───────────────── v1.18.0+0 Installed IndirectArrays ─────────────── v1.0.0 Installed ANSIColoredPrinters ────────── v0.0.1 Installed Xorg_libXrandr_jll ─────────── v1.5.5+0 Installed Xorg_libXext_jll ───────────── v1.3.7+0 Installed PProf ──────────────────────── v2.3.0 Installed GR ─────────────────────────── v0.69.5 Installed Chain ──────────────────────── v0.4.10 Installing 73 artifacts Installed artifact Ogg 250.3 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Opus 925.5 KiB Installed artifact Pango 1.1 MiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Xorg_xcb_util 39.5 KiB Installed artifact Cairo 2.2 MiB Installed artifact Dbus 489.8 KiB Installed artifact Libtiff 2.5 MiB Installed artifact Xorg_xcb_util_keysyms 17.8 KiB Installed artifact libfdk_aac 2.8 MiB Installed artifact fzf 3.3 MiB Installed artifact Gumbo 703.8 KiB Installed artifact Libiconv 1.9 MiB Installed artifact libvorbis 271.0 KiB Installed artifact Xorg_xcb_util_renderutil 32.1 KiB Installed artifact xkbcommon 263.7 KiB Installed artifact Expat 283.3 KiB Installed artifact pprof 6.6 MiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact LERC 218.5 KiB Installed artifact libaom 6.4 MiB Installed artifact Bzip2 503.5 KiB Installed artifact FFTW 2.2 MiB Installed artifact Libuuid 3.7 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Xorg_xcb_util_wm 147.9 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Glib 7.7 MiB Installed artifact GLFW 180.1 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact LAME 292.5 KiB Installed artifact Xorg_xcb_util_image 54.3 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact libsass 8.9 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Fontconfig 984.8 KiB Installed artifact Wayland 390.6 KiB Installed artifact Git_LFS 9.6 MiB Installed artifact LZO 208.9 KiB Installed artifact libdecor 44.1 KiB Installed artifact x264 2.1 MiB Installed artifact GR 9.3 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact OpenSSH 4.3 MiB Installed artifact Graphviz 6.4 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact libass 427.8 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact Arpack 147.2 KiB Installed artifact Pixman 372.2 KiB Installed artifact libpng 328.4 KiB Installed artifact Libmount 6.5 MiB Installed artifact FriBidi 78.9 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Libffi 44.2 KiB Installed artifact Rmath 121.9 KiB Installed artifact x265 1.4 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Qt5Base 20.1 MiB Installed artifact FFMPEG 11.7 MiB Installed artifact Git 48.9 MiB Updating `~/.julia/environments/v1.14/Project.toml` [e3db82ae] + Nucleotide_Essentials v0.2.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 [6e4b80f9] + BenchmarkTools v1.6.3 [d1d4a3ce] + BitFlags v0.1.9 [e1450e63] + BufferedStreams v1.2.2 [336ed68f] + CSV v0.10.15 ⌅ [8be319e6] + Chain v0.4.10 [d360d2e6] + ChainRulesCore v1.26.0 ⌅ [aaaa29a8] + Clustering v0.14.4 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [1313f7d8] + DataFramesMeta v0.11.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [e7dc6d0d] + DataValues v0.4.13 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [e30172f5] + Documenter v0.27.25 [35a29f4d] + DocumenterTools v0.1.21 [4e289a0a] + EnumX v1.0.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [c87230d0] + FFMPEG v0.4.5 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [08572546] + FlameGraphs v1.1.0 [59287772] + Formatting v0.4.3 ⌅ [28b8d3ca] + GR v0.69.5 [d7ba0133] + Git v1.5.0 [c27321d9] + Glob v1.3.1 [42e2da0e] + Grisu v1.0.2 [708ec375] + Gumbo v0.8.3 [cd3eb016] + HTTP v1.10.19 [34004b35] + HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] + IOCapture v0.2.5 [9b13fd28] + IndirectArrays v1.0.0 [842dd82b] + InlineStrings v1.4.5 ⌅ [a98d9a8b] + Interpolations v0.13.6 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [5ab0869b] + KernelDensity v0.6.10 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [23fbe1c1] + Latexify v0.15.21 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.3 [e1d29d7a] + Missings v1.2.0 ⌅ [6f286f6a] + MultivariateStats v0.9.0 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [e3db82ae] + Nucleotide_Essentials v0.2.1 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.0 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 ⌅ [e4faabce] + PProf v2.3.0 [69de0a69] + Parsers v2.8.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.3 ⌃ [91a5bcdd] + Plots v1.35.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [92933f4c] + ProgressMeter v1.11.0 [3349acd9] + ProtoBuf v1.2.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [01d81517] + RecipesPipeline v0.5.2 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [322a6be2] + Sass v0.2.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [992d4aef] + Showoff v1.0.3 [777ac1f9] + SimpleBufferStream v1.2.0 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.3 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 ⌅ [f3b207a7] + StatsPlots v0.14.34 [892a3eda] + StringManipulation v0.4.1 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [1cfade01] + UnicodeFun v0.4.1 [41fe7b60] + Unzip v0.2.0 [ea10d353] + WeakRefStrings v1.4.2 [cc8bc4a8] + Widgets v0.6.7 ⌅ [efce3f68] + WoodburyMatrices v0.5.6 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [68821587] + Arpack_jll v3.5.1+1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.3+0 [b22a6f82] + FFMPEG_jll v8.0.0+0 [f5851436] + FFTW_jll v3.3.11+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [0656b61e] + GLFW_jll v3.4.0+2 ⌅ [d2c73de3] + GR_jll v0.69.1+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.51.3+0 [7746bdde] + Glib_jll v2.86.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [3c863552] + Graphviz_jll v2.50.0+1 [528830af] + Gumbo_jll v0.10.2+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [c1c5ebd0] + LAME_jll v3.100.3+0 ⌅ [88015f11] + LERC_jll v3.0.0+1 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 ⌅ [89763e89] + Libtiff_jll v4.4.0+0 [38a345b3] + Libuuid_jll v2.41.2+0 [856f044c] + MKL_jll v2025.2.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.10+0 [e7412a2a] + Ogg_jll v1.3.6+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.5.2+0 [36c8627f] + Pango_jll v1.56.4+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [ea2cea3b] + Qt5Base_jll v5.15.3+2 [f50d1b31] + Rmath_jll v0.5.1+0 [a2964d1f] + Wayland_jll v1.24.0+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [12413925] + Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] + Xorg_xcb_util_jll v0.4.1+0 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [214eeab7] + fzf_jll v0.61.1+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [b53b4c65] + libpng_jll v1.6.50+0 [47bcb7c8] + libsass_jll v3.6.6+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 ⌅ [cf2c5f97] + pprof_jll v1.0.1+0 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.9.2+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 30.92s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4513.3 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4202.7 ms ✓ MacroTools 1582.0 ms ✓ InlineStrings 765.3 ms ✓ Reexport 882.3 ms ✓ TensorCore 1981.0 ms ✓ IrrationalConstants 919.9 ms ✓ Measures 772.8 ms ✓ DataValueInterfaces 828.0 ms ✓ StatsAPI 1108.1 ms ✓ Observables 905.8 ms ✓ Contour 1275.2 ms ✓ TranscodingStreams 833.4 ms ✓ LaTeXStrings 890.0 ms ✓ Glob 1140.7 ms ✓ Statistics 825.8 ms ✓ Chain 976.9 ms ✓ StaticArraysCore 922.1 ms ✓ StableRNGs 825.0 ms ✓ PtrArrays 849.7 ms ✓ SimpleBufferStream 1071.2 ms ✓ ANSIColoredPrinters 1259.5 ms ✓ Grisu 894.3 ms ✓ DataAPI 1282.4 ms ✓ URIs 860.3 ms ✓ InvertedIndices 907.9 ms ✓ BitFlags 1170.9 ms ✓ AbstractTrees 1061.9 ms ✓ AbstractFFTs 887.4 ms ✓ EnumX 1073.3 ms ✓ WorkerUtilities 2167.4 ms ✓ FillArrays 872.3 ms ✓ IndirectArrays 1303.1 ms ✓ OrderedCollections 1146.0 ms ✓ DocStringExtensions 1057.9 ms ✓ Unzip 1641.4 ms ✓ OffsetArrays 1019.9 ms ✓ BufferedStreams 745.4 ms ✓ IteratorInterfaceExtensions 1847.6 ms ✓ Crayons 872.4 ms ✓ IOCapture 971.7 ms ✓ DelimitedFiles 1191.8 ms ✓ Formatting 1014.2 ms ✓ NaNMath 1171.1 ms ✓ Requires 1782.1 ms ✓ ConcurrentUtilities 1249.2 ms ✓ SuiteSparse 1374.2 ms ✓ WoodburyMatrices 919.1 ms ✓ Scratch 2770.0 ms ✓ SentinelArrays 1102.2 ms ✓ LoggingExtras 1746.0 ms ✓ ProgressMeter 3284.9 ms ✓ UnicodeFun 1147.1 ms ✓ Compat 1158.4 ms ✓ Preferences 1584.3 ms ✓ ExceptionUnwrapping 3743.0 ms ✓ DataValues 961.2 ms ✓ CodecZlib 1505.1 ms ✓ Statistics → SparseArraysExt 3971.2 ms ✓ FixedPointNumbers 1471.7 ms ✓ Distances 974.3 ms ✓ AliasTables 883.5 ms ✓ Showoff 976.2 ms ✓ Missings 1033.4 ms ✓ PooledArrays 3992.9 ms ✓ OpenSSL 873.0 ms ✓ LeftChildRightSiblingTrees 3678.7 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1536.9 ms ✓ FillArrays → FillArraysSparseArraysExt 965.7 ms ✓ FillArrays → FillArraysStatisticsExt 1421.2 ms ✓ LogExpFunctions 8070.5 ms ✓ ProtoBuf 780.0 ms ✓ TableTraits 850.1 ms ✓ Ratios 9406.0 ms ✓ FileIO 5803.2 ms ✓ Latexify 1806.0 ms ✓ PDMats 1392.6 ms ✓ AxisAlgorithms 1106.3 ms ✓ RelocatableFolders 847.0 ms ✓ Compat → CompatLinearAlgebraExt 922.1 ms ✓ PrecompileTools 1205.9 ms ✓ JLLWrappers 1132.8 ms ✓ SnoopPrecompile 2734.3 ms ✓ ColorTypes 1283.3 ms ✓ Distances → DistancesSparseArraysExt 1801.4 ms ✓ Tables 1002.1 ms ✓ Ratios → RatiosFixedPointNumbersExt 1444.7 ms ✓ FillArrays → FillArraysPDMatsExt 2672.9 ms ✓ ChainRulesCore 2086.2 ms ✓ FilePathsBase 4448.7 ms ✓ DataStructures 3162.4 ms ✓ StringManipulation 13775.8 ms ✓ StaticArrays 2936.7 ms ✓ RecipesBase 17216.1 ms ✓ Parsers 1436.1 ms ✓ Libffi_jll 1454.8 ms ✓ LZO_jll 1485.6 ms ✓ Bzip2_jll 1450.3 ms ✓ Rmath_jll 1454.9 ms ✓ OpenSpecFun_jll 1236.6 ms ✓ Xorg_xtrans_jll 1441.6 ms ✓ Opus_jll 5015.3 ms ✓ IntelOpenMP_jll 1469.9 ms ✓ x265_jll 1415.6 ms ✓ fzf_jll 1433.5 ms ✓ libpng_jll 4729.8 ms ✓ oneTBB_jll 1617.0 ms ✓ Arpack_jll 917.9 ms ✓ EpollShim_jll 1080.7 ms ✓ Libmount_jll 1234.1 ms ✓ libfdk_aac_jll 1240.1 ms ✓ Libuuid_jll 1252.9 ms ✓ FriBidi_jll 1107.5 ms ✓ LERC_jll 1362.5 ms ✓ Git_LFS_jll 1347.4 ms ✓ libsass_jll 1320.7 ms ✓ Gumbo_jll 1434.0 ms ✓ Xorg_libXau_jll 1432.7 ms ✓ Ogg_jll 1450.1 ms ✓ FFTW_jll 1497.0 ms ✓ OpenSSH_jll 1387.7 ms ✓ LAME_jll 1384.7 ms ✓ Graphite2_jll 1428.6 ms ✓ x264_jll 1417.3 ms ✓ LLVMOpenMP_jll 1420.5 ms ✓ Libiconv_jll 1428.7 ms ✓ MbedTLS_jll 1456.4 ms ✓ libaom_jll 1358.0 ms ✓ Xorg_libXdmcp_jll 1432.6 ms ✓ Expat_jll 1470.3 ms ✓ JpegTurbo_jll 1296.0 ms ✓ ColorTypes → StyledStringsExt 7975.9 ms ✓ Colors 3863.1 ms ✓ ColorVectorSpace 2119.4 ms ✓ TableOperations 1215.3 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 807.9 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 884.8 ms ✓ Distances → DistancesChainRulesCoreExt 3051.0 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 2671.2 ms ✓ FilePathsBase → FilePathsBaseTestExt 967.0 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1559.4 ms ✓ SortingAlgorithms 2809.0 ms ✓ QuadGK 39802.2 ms ✓ PrettyTables 1423.5 ms ✓ StaticArrays → StaticArraysStatisticsExt 1488.5 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 4060.6 ms ✓ JSON 989.0 ms ✓ InlineStrings → ParsersExt 1459.0 ms ✓ FreeType2_jll 1528.0 ms ✓ Rmath 5140.0 ms ✓ SpecialFunctions 2439.6 ms ✓ JLFzf 10422.3 ms ✓ MKL_jll 1527.6 ms ✓ Arpack 1994.3 ms ✓ Sass 1215.6 ms ✓ Gumbo 1410.9 ms ✓ libvorbis_jll 1381.5 ms ✓ Pixman_jll 1466.5 ms ✓ GettextRuntime_jll 2018.9 ms ✓ MbedTLS 1555.2 ms ✓ Xorg_libxcb_jll 1386.2 ms ✓ Dbus_jll 1439.0 ms ✓ Git_jll 1442.0 ms ✓ Wayland_jll 1430.8 ms ✓ Libtiff_jll 1756.2 ms ✓ Widgets 10481.9 ms ✓ FlameGraphs 8154.9 ms ✓ ColorSchemes 8328.7 ms ✓ StatsBase 87068.0 ms ✓ DataFrames 4273.9 ms ✓ NearestNeighbors 4458.5 ms ✓ Interpolations 8556.7 ms ✓ Documenter 3103.9 ms ✓ BenchmarkTools 2591.0 ms ✓ WeakRefStrings 1585.8 ms ✓ Fontconfig_jll 4044.2 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2468.9 ms ✓ HypergeometricFunctions 1403.1 ms ✓ ColorVectorSpace → SpecialFunctionsExt 6243.1 ms ✓ FFTW 1435.5 ms ✓ Glib_jll 26344.7 ms ✓ HTTP 1367.5 ms ✓ Xorg_xcb_util_jll 1435.8 ms ✓ Xorg_libX11_jll 982.2 ms ✓ Git 17875.3 ms ✓ PlotUtils 7806.3 ms ✓ MultivariateStats 8276.5 ms ✓ DataFramesMeta 7271.0 ms ✓ Latexify → DataFramesExt 8626.0 ms ✓ Clustering 29501.8 ms ✓ CSV 2869.1 ms ✓ StatsFuns 6963.9 ms ✓ FileIO → HTTPExt 1469.1 ms ✓ Xorg_xcb_util_renderutil_jll 1486.1 ms ✓ Xorg_xcb_util_wm_jll 1464.8 ms ✓ Xorg_xcb_util_image_jll 1481.0 ms ✓ Xorg_xcb_util_keysyms_jll 1479.3 ms ✓ Xorg_libXfixes_jll 1453.1 ms ✓ Xorg_libXrender_jll 1471.0 ms ✓ Xorg_libXext_jll 1493.1 ms ✓ Xorg_libxkbfile_jll 4235.0 ms ✓ DocumenterTools 9706.2 ms ✓ PlotThemes 6993.7 ms ✓ RecipesPipeline 3582.6 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 13983.8 ms ✓ Distributions 1487.7 ms ✓ Xorg_libXcursor_jll 1430.4 ms ✓ Xorg_libXrandr_jll 1413.2 ms ✓ Xorg_libXinerama_jll 1442.9 ms ✓ Xorg_libXi_jll 1459.7 ms ✓ Cairo_jll 1468.6 ms ✓ Libglvnd_jll 1442.6 ms ✓ Xorg_xkbcomp_jll 4166.0 ms ✓ Distributions → DistributionsTestExt 4041.9 ms ✓ Distributions → DistributionsChainRulesCoreExt 1529.2 ms ✓ HarfBuzz_jll 1261.4 ms ✓ Xorg_xkeyboard_config_jll 5262.7 ms ✓ KernelDensity 1572.6 ms ✓ libass_jll 1580.8 ms ✓ Pango_jll 2021.6 ms ✓ xkbcommon_jll 2551.6 ms ✓ FFMPEG_jll 2056.2 ms ✓ Graphviz_jll 3 dependencies had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ ┌ Formatting │ ┌ Warning: DEPRECATION NOTICE │ │ │ │ Formatting.jl has been unmaintained for a while, with some serious │ │ correctness bugs compromising the original purpose of the package. As a result, │ │ it has been deprecated - consider using an alternative, such as │ │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly. │ │ │ │ If you are not using Formatting.jl as a direct dependency, please consider │ │ opening an issue on any packages you are using that do use it as a dependency. │ │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which │ │ package originally brings it in as a dependency. │ └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12 └ ┌ Interpolations │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/Interpolations.jl:454 declares type variable N but does not use it. │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/Interpolations.jl:457 declares type variable N but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/gridded/gridded.jl:37 declares type variable pad but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/gridded/gridded.jl:60 declares type variable pad but does not use it. │ WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/y4lLj/src/deprecations.jl:30 declares type variable TWeights but does not use it. └ Precompilation completed after 733.79s ################################################################################ # Testing # Testing Nucleotide_Essentials Status `/tmp/jl_8ALqMn/Project.toml` [e3db82ae] Nucleotide_Essentials v0.2.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_8ALqMn/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 ⌃ [13072b0f] AxisAlgorithms v1.0.1 [6e4b80f9] BenchmarkTools v1.6.3 [d1d4a3ce] BitFlags v0.1.9 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.15 ⌅ [8be319e6] Chain v0.4.10 [d360d2e6] ChainRulesCore v1.26.0 ⌅ [aaaa29a8] Clustering v0.14.4 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [1313f7d8] DataFramesMeta v0.11.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [e7dc6d0d] DataValues v0.4.13 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.21 [4e289a0a] EnumX v1.0.5 [460bff9d] ExceptionUnwrapping v0.1.11 [c87230d0] FFMPEG v0.4.5 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.14.0 [53c48c17] FixedPointNumbers v0.8.5 [08572546] FlameGraphs v1.1.0 [59287772] Formatting v0.4.3 ⌅ [28b8d3ca] GR v0.69.5 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.3.1 [42e2da0e] Grisu v1.0.2 [708ec375] Gumbo v0.8.3 [cd3eb016] HTTP v1.10.19 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [9b13fd28] IndirectArrays v1.0.0 [842dd82b] InlineStrings v1.4.5 ⌅ [a98d9a8b] Interpolations v0.13.6 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [5ab0869b] KernelDensity v0.6.10 [b964fa9f] LaTeXStrings v1.4.0 ⌅ [23fbe1c1] Latexify v0.15.21 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.3 [e1d29d7a] Missings v1.2.0 ⌅ 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with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: InitError: UndefVarError: `GR_jll` not defined in `GR.GRPreferences` Suggestion: check for spelling errors or missing imports. Hint: GR_jll is loaded but not imported in the active module Main. Stacktrace: [1] __init__() @ GR.GRPreferences ~/.julia/packages/GR/uzy0J/src/preferences.jl:36 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [4] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [5] macro expansion @ ./loading.jl:2504 [inlined] [6] macro expansion @ ./lock.jl:376 [inlined] [7] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [8] require @ ./loading.jl:2444 [inlined] [9] eval_import_path @ ./module.jl:36 [inlined] [10] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [11] top-level scope @ ~/.julia/packages/Plots/W75kY/src/backends/gr.jl:3 [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ ~/.julia/packages/Plots/W75kY/src/Plots.jl:200 [14] include(mod::Module, _path::String) @ Base ./Base.jl:309 [15] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [16] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [17] macro expansion @ ./loading.jl:2504 [inlined] [18] macro expansion @ ./lock.jl:376 [inlined] [19] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [20] require @ ./loading.jl:2444 [inlined] [21] eval_import_path @ ./module.jl:36 [inlined] [22] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [23] top-level scope @ ~/.julia/packages/Nucleotide_Essentials/pztns/src/Nucleotide_Essentials.jl:3 [24] include(mod::Module, _path::String) @ Base ./Base.jl:309 [25] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [26] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [27] macro expansion @ ./loading.jl:2504 [inlined] [28] macro expansion @ ./lock.jl:376 [inlined] [29] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [30] require @ ./loading.jl:2444 [inlined] [31] eval_import_path @ ./module.jl:36 [inlined] [32] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [33] _eval_using @ ./module.jl:137 [inlined] [34] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [35] top-level scope @ ~/.julia/packages/Nucleotide_Essentials/pztns/test/runtests.jl:2 [36] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [37] top-level scope @ none:6 [38] eval(m::Module, e::Any) @ Core ./boot.jl:489 [39] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [40] _start() @ Base ./client.jl:577 during initialization of module GRPreferences in expression starting at /home/pkgeval/.julia/packages/GR/uzy0J/src/GR.jl:1 in expression starting at /home/pkgeval/.julia/packages/Plots/W75kY/src/backends/gr.jl:3 in expression starting at /home/pkgeval/.julia/packages/Plots/W75kY/src/Plots.jl:1 in expression starting at /home/pkgeval/.julia/packages/Nucleotide_Essentials/pztns/src/Nucleotide_Essentials.jl:1 in expression starting at /home/pkgeval/.julia/packages/Nucleotide_Essentials/pztns/test/runtests.jl:2 Testing failed after 180.44s ERROR: LoadError: Package Nucleotide_Essentials errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 987.18s: package tests unexpectedly errored