Package evaluation to test MolecularGraph on Julia 1.14.0-DEV.30 (073666df8b*) started at 2025-11-04T16:56:58.727 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.61s ################################################################################ # Installation # Installing MolecularGraph... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [6c89ec66] + MolecularGraph v0.22.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [ec485272] + ArnoldiMethod v0.4.0 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [864edb3b] + DataStructures v0.19.2 [8bb1440f] + DelimitedFiles v1.9.1 [411431e0] + Extents v0.1.6 [53c48c17] + FixedPointNumbers v0.8.5 [5c1252a2] + GeometryBasics v0.5.10 [86223c79] + Graphs v1.13.1 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.11 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.2.0 [1914dd2f] + MacroTools v0.5.16 [20f20a25] + MakieCore v0.10.0 [6c89ec66] + MolecularGraph v0.22.0 [510215fc] + Observables v0.5.5 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [189a3867] + Reexport v1.2.2 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [ec057cc2] + StructUtils v2.5.1 [ddb6d928] + YAML v0.4.14 [5ae413db] + EarCut_jll v2.2.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [f6050b86] + coordgenlibs_jll v3.0.2+0 [172afb32] + libinchi_jll v1.6.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Installation completed after 4.95s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 1227.2 ms ✓ libinchi_jll 1217.6 ms ✓ coordgenlibs_jll 9711.2 ms ✓ MakieCore 9651.0 ms ✓ Graphs 25849.8 ms ✓ MolecularGraph 5 dependencies successfully precompiled in 49 seconds. 68 already precompiled. Precompilation completed after 60.44s ################################################################################ # Testing # Testing MolecularGraph Status `/tmp/jl_orU5GV/Project.toml` [5ae59095] Colors v0.13.1 [8bb1440f] DelimitedFiles v1.9.1 [5c1252a2] GeometryBasics v0.5.10 [86223c79] Graphs v1.13.1 [682c06a0] JSON v1.2.0 [20f20a25] MakieCore v0.10.0 [6c89ec66] MolecularGraph v0.22.0 [bac558e1] OrderedCollections v1.8.1 [10745b16] Statistics v1.11.1 [ec057cc2] StructUtils v2.5.1 [ddb6d928] YAML v0.4.14 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_orU5GV/Manifest.toml` [ec485272] ArnoldiMethod v0.4.0 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [864edb3b] DataStructures v0.19.2 [8bb1440f] DelimitedFiles v1.9.1 [411431e0] Extents v0.1.6 [53c48c17] FixedPointNumbers v0.8.5 [5c1252a2] GeometryBasics v0.5.10 [86223c79] Graphs v1.13.1 [d25df0c9] Inflate v0.1.5 [8197267c] IntervalSets v0.7.11 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.2.0 [1914dd2f] MacroTools v0.5.16 [20f20a25] MakieCore v0.10.0 [6c89ec66] MolecularGraph v0.22.0 [510215fc] Observables v0.5.5 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [189a3867] Reexport v1.2.2 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [ec057cc2] StructUtils v2.5.1 [ddb6d928] YAML v0.4.14 [5ae413db] EarCut_jll v2.2.4+0 [94ce4f54] Libiconv_jll v1.18.0+0 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Testing Running tests... Test Summary: | Pass Total Time util.geometry | 26 26 7.6s Test Summary: | Pass Total Time util.iterator | 22 22 2.6s Test Summary: | Pass Total Time util.math | 4 4 0.2s Test Summary: | Pass Total Time operator | 20 20 3.2s Test Summary: | Pass Total Time cycle | 8 8 6.1s Test Summary: | Pass Total Time bipartite | 4 4 2.4s Test Summary: | Pass Total Time matching | 12 12 6.7s Test Summary: | Pass Total Time graph.planarity | 42 42 9.2s Test Summary: | Pass Total Time clique | 22 22 4.7s Test Summary: | Pass Total Time isomorphism_vf2 | 23 23 9.3s Test Summary: | Pass Total Time isomorphism_clique | 15 15 21.2s Test Summary: | Pass Total Time model.atom | 18 18 1.0s Test Summary: | Pass Total Time model.bond | 10 10 0.3s Test Summary: | Pass Total Time model.molgraph | 76 76 18.4s Test Summary: | Pass Total Time model.query | 43 43 14.2s Test Summary: | Pass Total Time smarts.base | 8 8 0.2s Test Summary: | Pass Total Time smarts.logicaloperator | 24 24 1.4s Test Summary: | Pass Broken Total Time smarts.atom | 80 1 81 2.5s Test Summary: | Pass Total Time smarts.bond | 11 11 0.4s Test Summary: | Pass Total Time smarts.molecule | 34 34 1.9s Test Summary: | Pass Total Time smarts.smiles | 53 53 13.6s Test Summary: | Pass Total Time smarts.smarts | 10 10 4.5s [ Info: sdfile parse error - unsupported atom symbol X (#2 in sdfilereader) [ Info: sdfile parse error - unsupported bond order 8 (#1 in sdfilereader) Test Summary: | Pass Total Time sdfilereader | 74 74 17.8s [ Info: 100 records exported. Test Summary: | Pass Total Time sdfilewriter | 6 6 9.8s Test Summary: | Pass Total Time json | 34 34 45.6s Test Summary: | Pass Total Time stereo | 92 92 5.7s Test Summary: | Pass Total Time preprocess | 69 69 5.4s Test Summary: | Pass Total Time coords.descriptor | 3 3 1.2s Test Summary: | Pass Total Time coords | 2 2 0.2s Test Summary: | Pass Total Time properties | 105 105 5.9s Test Summary: | Pass Total Time mass | 23 23 3.8s Test Summary: | Pass Total Time wclogp | 10 10 30.3s Test Summary: | Pass Broken Total Time inchi | 6 1 7 5.7s Test Summary: | Pass Total Time virtualatom | 13 13 14.0s Test Summary: | Pass Total Time structurematch | 93 93 20.9s Test Summary: | Pass Total Time structurematch_mcs | 34 34 4.1s [ Info: MolecularGraph.querymatch: maxsize exceeded Test Summary: | Pass Total Time querycontainment | 79 79 2.5s Test Summary: | Pass Total Time draw.base | 17 17 7.4s Test Summary: | Total Time svg | 0 8.3s Test Summary: | Pass Total Time draw3d | 1 1 0.2s Testing MolecularGraph tests passed Testing completed after 342.93s PkgEval succeeded after 438.27s