Package evaluation to test LaMEM on Julia 1.14.0-DEV.30 (073666df8b*) started at 2025-11-05T02:16:41.459 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.58s ################################################################################ # Installation # Installing LaMEM... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [2e889f3d] + LaMEM v0.4.7 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [7b0aa2c9] + BibTeX v0.1.0 [fa961155] + CEnum v0.5.0 [d360d2e6] + ChainRulesCore v1.26.0 [944b1d66] + CodecZlib v0.7.8 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [150eb455] + CoordinateTransformations v0.6.4 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [411431e0] + Extents v0.1.6 [c87230d0] + FFMPEG v0.4.5 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f6369f11] + ForwardDiff v0.10.39 [68eda718] + GeoFormatTypes v0.4.4 ⌃ [cf35fbd7] + GeoInterface v1.4.1 ⌅ [e018b62d] + GeoParams v0.6.8 [0ef565a4] + Geodesy v1.2.0 ⌅ [5c1252a2] + GeometryBasics v0.4.11 ⌃ [3700c31b] + GeophysicalModelGenerator v0.7.4 [c27321d9] + Glob v1.3.1 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [7d512f48] + InternedStrings v0.7.0 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.55 [692b3bcd] + JLLWrappers v1.7.1 [b835a17e] + JpegTurbo v0.1.6 [49dc5b4e] + KernelDensitySJ v0.2.1 [2e889f3d] + LaMEM v0.4.7 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.3 [4345ca2d] + Loess v0.6.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [da04e1cc] + MPI v0.20.23 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 ⌅ [7269a6da] + MeshIO v0.4.13 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [f09324ee] + Netpbm v1.1.1 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.1 [f57f5aa1] + PNGFiles v0.4.4 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [dc215faf] + ReadVTK v0.2.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [f2b01f46] + Roots v2.2.10 [fdea26ae] + SIMD v3.7.2 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [45858cf5] + Sixel v0.1.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [cae243ae] + StackViews v0.1.2 ⌅ [aedffcd0] + Static v0.8.10 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 ⌅ [09ab397b] + StructArrays v0.6.21 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.6 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [967fb449] + Unidecode v1.2.0 [1986cc42] + Unitful v1.25.1 [4004b06d] + VTKBase v1.0.1 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.0.0 [64499a7a] + WriteVTK v1.21.2 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.7.3+0 [b22a6f82] + FFMPEG_jll v8.0.0+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [59f7168a] + Giflib_jll v5.2.3+0 [7746bdde] + Glib_jll v2.86.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [905a6f67] + Imath_jll v3.1.11+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 ⌅ [15d6fa20] + LaMEM_jll v2.1.4+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 ⌅ [7cb0a576] + MPICH_jll v4.1.2+1 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e7412a2a] + Ogg_jll v1.3.6+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.2.4+0 ⌃ [fe0851c0] + OpenMPI_jll v4.1.8+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.5.2+0 ⌅ [8fa3689e] + PETSc_jll v3.19.6+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 ⌃ [aabda75e] + SCALAPACK32_jll v2.2.1+1 [02c8fc9c] + XML2_jll v2.15.1+0 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [b53b4c65] + libpng_jll v1.6.50+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 12.67s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 5030.7 ms ✓ MPICH_jll 1817.7 ms ✓ WriteVTK 2553.3 ms ✓ ReadVTK 41679.8 ms ✓ GeoParams 11031.0 ms ✓ MPI 5475.6 ms ✓ SCALAPACK32_jll 30252.8 ms ✓ GeophysicalModelGenerator 5233.9 ms ✓ PETSc_jll 5771.6 ms ✓ LaMEM_jll 17201.5 ms ? LaMEM 9 dependencies successfully precompiled in 128 seconds. 249 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 2 dependencies had output during precompilation: ┌ GeophysicalModelGenerator │ ┌ Warning: Replacing docs for `GeophysicalModelGenerator.convert2FEData :: Tuple{GeophysicalModelGenerator.Q1Data}` in module `GeophysicalModelGenerator` │ └ @ Base.Docs docs/Docs.jl:253 └ ┌ LaMEM │ WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/cMvIT/src/ReadVTK.jl:186 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:279. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 142.81s ################################################################################ # Testing # Testing LaMEM Status `/tmp/jl_0G9Bl8/Project.toml` ⌃ [13f3f980] CairoMakie v0.11.9 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e018b62d] GeoParams v0.6.8 ⌃ [3700c31b] GeophysicalModelGenerator v0.7.4 [c27321d9] Glob v1.3.1 ⌅ [a98d9a8b] Interpolations v0.15.1 [2e889f3d] LaMEM v0.4.7 [9c8b4983] LightXML v0.9.3 [da04e1cc] MPI v0.20.23 [3da0fdf6] MPIPreferences v0.1.11 [91a5bcdd] Plots v1.41.1 [dc215faf] ReadVTK v0.2.5 [10745b16] Statistics v1.11.1 [64499a7a] WriteVTK v1.21.2 ⌅ [15d6fa20] LaMEM_jll v2.1.4+0 ⌅ [7cb0a576] MPICH_jll v4.1.2+1 [8dfed614] Test v1.11.0 Status `/tmp/jl_0G9Bl8/Manifest.toml` [47edcb42] ADTypes v1.18.0 [621f4979] AbstractFFTs v1.5.0 [398f06c4] AbstractLattices v0.3.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [4fba245c] ArrayInterface v7.22.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [7b0aa2c9] BibTeX v0.1.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 ⌃ [13f3f980] CairoMakie v0.11.9 [d360d2e6] ChainRulesCore v1.26.0 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [150eb455] CoordinateTransformations v0.6.4 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [927a84f5] DelaunayTriangulation v0.8.12 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.10 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.9 [460bff9d] ExceptionUnwrapping v0.1.11 [411431e0] Extents v0.1.6 [c87230d0] FFMPEG v0.4.5 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.17.1 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.14.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 ⌅ [f6369f11] ForwardDiff v0.10.39 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [28b8d3ca] GR v0.73.18 [68eda718] GeoFormatTypes v0.4.4 ⌃ [cf35fbd7] GeoInterface v1.4.1 ⌅ [e018b62d] GeoParams v0.6.8 [0ef565a4] Geodesy v1.2.0 ⌅ [5c1252a2] GeometryBasics v0.4.11 ⌃ [3700c31b] GeophysicalModelGenerator v0.7.4 [c27321d9] Glob v1.3.1 [a2bd30eb] Graphics v1.1.3 ⌅ [3955a311] GridLayoutBase v0.10.2 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.19 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [18e54dd8] IntegerMathUtils v0.1.3 [7d512f48] InternedStrings v0.7.0 ⌅ [a98d9a8b] Interpolations v0.15.1 ⌃ [d1acc4aa] IntervalArithmetic v0.22.36 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.55 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.2.0 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.10 [49dc5b4e] KernelDensitySJ v0.2.1 [2e889f3d] LaMEM v0.4.7 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [8cdb02fc] LazyModules v0.3.1 [9c8b4983] LightXML v0.9.3 [d3d80556] LineSearches v7.4.0 [9b3f67b0] LinearAlgebraX v0.2.10 [4345ca2d] Loess v0.6.4 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [da04e1cc] MPI v0.20.23 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 ⌅ [ee78f7c6] Makie v0.20.8 ⌅ [20f20a25] MakieCore v0.7.3 [dbb5928d] MappedArrays v0.4.2 ⌅ [0a4f8689] MathTeXEngine v0.5.7 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.3 ⌅ [7269a6da] MeshIO v0.4.13 [e1d29d7a] Missings v1.2.0 [7475f97c] Mods v2.2.6 [e94cdb99] MosaicViews v0.3.4 [46d2c3a1] MuladdMacro v0.2.4 [3b2b4ff1] Multisets v0.4.5 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.22 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [4d8831e6] OpenSSL v1.6.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [90014a1f] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Method definition piece(ReadVTK.VTKFile) in module ReadVTK at /home/pkgeval/.julia/packages/ReadVTK/cMvIT/src/ReadVTK.jl:186 overwritten in module IO_functions at /home/pkgeval/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:279. Saved file: Model3D.vts Julia setup: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:6 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:12 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:26 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:577 in expression starting at none:1 Saved file: Model3D.vts velocity box: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:42 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:47 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:76 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:577 in expression starting at none:1 Saved file: Model3D.vts phase transitions: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:92 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:96 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:149 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:577 in expression starting at none:1 pwd() = "/home/pkgeval/.julia/packages/LaMEM/M6C0P/test/example_1/example_1/example_phase" readdir() = ["Model3D.vts", "output.dat"] Saved file: Model3D.vts phase diagrams: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:164 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_julia_setup_phase_diagrams.jl:36 [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:166 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:166 [inlined] [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [19] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [21] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [inlined] [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [23] top-level scope @ none:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [26] _start() @ Base ./client.jl:577 in expression starting at none:1 in expression starting at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_julia_setup_phase_diagrams.jl:36 Saved file: Model3D.vts build-in geometries: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:171 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:174 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_julia_setups.jl:187 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:577 in expression starting at none:1 cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/input_files/FallingBlock_Multigrid.dat Adding PETSc option: -snes_type ksponly Adding PETSc option: -js_ksp_monitor Adding PETSc option: -crs_pc_type bjacobi Finished parsing input file -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [ ] Maximum number of steps : 1 Time step : 10. [ ] Minimum time step : 1e-05 [ ] Maximum time step : 100. [ ] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.5 Output time step : 0.2 [ ] Output every [n] steps : 1 Output [n] initial steps : 1 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [32, 32, 32] Number of cells : 32768 Number of faces : 101376 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [0., 0., 0.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 (dens) : rho = 1. [ ] (diff) : eta = 1. [ ] Bd = 0.5 [ ] Phase ID : 1 (dens) : rho = 2. [ ] (diff) : eta = 100. [ ] Bd = 0.005 [ ] Phase ID : 2 (dens) : rho = 2. [ ] (diff) : eta = 1000. [ ] Bd = 0.0005 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -1.] [ ] Surface stabilization (FSSA) : 1. Use lithostatic pressure for creep @ Minimum viscosity : 0.001 [ ] Maximum viscosity : 1e+12 [ ] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : empirical STAGP (STAG + pressure points) Marker control type : pure AVD for all control volumes Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 Interpolation constant : 0.7 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.0185027 sec) -------------------------------------------------------------------------- Output parameters: Output file name : FB_multigrid Write .pvd file : yes Phase @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ Deviatoric stress second invariant @ Deviatoric strain rate tensor @ Deviatoric strain rate second invariant @ -------------------------------------------------------------------------- AVD output parameters: Write .pvd file : yes AVD refinement factor : 3 -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Preconditioner type : coupled Galerkin geometric multigrid Global coarse grid [nx,ny,nz] : [4, 4, 4] Local coarse grid [nx,ny,nz] : [4, 4, 4] Number of multigrid levels : 4 -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : multigrid Multigrid smoother levels KSP : chebyshev Multigrid smoother levels PC : sor Number of smoothening steps : 10 Coarse level KSP : preonly Coarse level PC : bjacobi -------------------------------------------------------------------------- Saving output ... done (0.869563 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [ ] Tentative time step : 10.00000000 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 1.832203177398e+02 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 2.121468833494e+01 1 KSP Residual norm 2.007312746141e+01 2 KSP Residual norm 1.436721786209e+01 3 KSP Residual norm 7.031413261028e+00 4 KSP Residual norm 2.361866279194e+00 5 KSP Residual norm 1.011785314253e+00 6 KSP Residual norm 4.700182839567e-01 7 KSP Residual norm 3.431392417306e-01 8 KSP Residual norm 1.759675422301e-01 9 KSP Residual norm 1.053716068647e-01 10 KSP Residual norm 9.342460424411e-02 11 KSP Residual norm 7.749792924243e-02 12 KSP Residual norm 5.192767141878e-02 13 KSP Residual norm 3.842800827033e-02 14 KSP Residual norm 1.589386132911e-02 15 KSP Residual norm 8.851034636242e-03 16 KSP Residual norm 4.554700539865e-03 17 KSP Residual norm 2.632601842348e-03 18 KSP Residual norm 1.311043982030e-03 19 KSP Residual norm 6.462411319589e-04 20 KSP Residual norm 3.583024905386e-04 21 KSP Residual norm 1.510300556884e-04 Linear js_ solve converged due to CONVERGED_RTOL iterations 21 1 SNES Function norm 1.371165827605e-02 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 7.16637 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 2.351162529297e-05 |Div|_2 = 1.404433474462e-04 Momentum: |mRes|_2 = 1.371093900305e-02 -------------------------------------------------------------------------- Actual time step : 6.73129 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD YZED) injected 5 markers and deleted 0 markers in 1.1776e-03 s Marker control [0]: (AVD XZED) injected 7 markers and deleted 0 markers in 1.4717e-03 s Marker control [0]: (AVD XYED) injected 10 markers and deleted 0 markers in 1.9249e-03 s -------------------------------------------------------------------------- Saving output ... done (1.26902 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 11.246 (sec) -------------------------------------------------------------------------- cores_compute = 4 Falling Block test on 4 cores failed cores_compute = 1 -------------------------------------------------------------------------- Lithosphere and Mantle Evolution Model Compiled: Date: Jan 1 1970 - Time: 00:00:00 Version : 2.1.4 -------------------------------------------------------------------------- STAGGERED-GRID FINITE DIFFERENCE CANONICAL IMPLEMENTATION -------------------------------------------------------------------------- Parsing input file : /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/input_files/FallingBlock_DirectSolver.dat Adding PETSc option: -snes_type ksponly Adding PETSc option: -js_ksp_monitor Finished parsing input file -------------------------------------------------------------------------- Time stepping parameters: Simulation end time : 100. [ ] Maximum number of steps : 2 Time step : 10. [ ] Minimum time step : 1e-05 [ ] Maximum time step : 100. [ ] Time step increase factor : 0.1 CFL criterion : 0.5 CFLMAX (fixed time steps) : 0.5 Output time step : 0.2 [ ] Output every [n] steps : 1000 Output [n] initial steps : 1 -------------------------------------------------------------------------- Grid parameters: Total number of cpu : 1 Processor grid [nx, ny, nz] : [1, 1, 1] Fine grid cells [nx, ny, nz] : [16, 16, 16] Number of cells : 4096 Number of faces : 13056 Maximum cell aspect ratio : 1.00000 Lower coordinate bounds [bx, by, bz] : [0., 0., 0.] Upper coordinate bounds [ex, ey, ez] : [1., 1., 1.] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Material parameters: -------------------------------------------------------------------------- Phase ID : 0 (dens) : rho = 1. [ ] (diff) : eta = 1. [ ] Bd = 0.5 [ ] Phase ID : 1 (dens) : rho = 2. [ ] (diff) : eta = 100. [ ] Bd = 0.005 [ ] -------------------------------------------------------------------------- -------------------------------------------------------------------------- Boundary condition parameters: No-slip boundary mask [lt rt ft bk bm tp] : 0 0 0 0 0 0 -------------------------------------------------------------------------- Solution parameters & controls: Gravity [gx, gy, gz] : [0., 0., -1.] [ ] Surface stabilization (FSSA) : 1. Use lithostatic pressure for creep @ Minimum viscosity : 0.001 [ ] Maximum viscosity : 1e+12 [ ] Max. melt fraction (viscosity, density) : 1. Rheology iteration number : 25 Rheology iteration tolerance : 1e-06 Ground water level type : none -------------------------------------------------------------------------- Advection parameters: Advection scheme : Runge-Kutta 2-nd order Periodic marker advection : 0 0 0 Marker setup scheme : geometric primitives Velocity interpolation scheme : empirical STAGP (STAG + pressure points) Marker control type : pure AVD for all control volumes Markers per cell [nx, ny, nz] : [3, 3, 3] Marker distribution type : random noise Background phase ID : 0 Interpolation constant : 0.7 -------------------------------------------------------------------------- Reading geometric primitives ... done (0.00334238 sec) -------------------------------------------------------------------------- Output parameters: Output file name : FB_direct Write .pvd file : yes Phase @ Total effective viscosity @ Creep effective viscosity @ Velocity @ Pressure @ -------------------------------------------------------------------------- AVD output parameters: Write .pvd file : yes AVD refinement factor : 3 -------------------------------------------------------------------------- Preconditioner parameters: Matrix type : monolithic Penalty parameter (pgamma) : 1.000000e+03 Preconditioner type : user-defined -------------------------------------------------------------------------- Solver parameters specified: Outermost Krylov solver : gmres Solver type : serial direct/lu Solver package : petsc -------------------------------------------------------------------------- Saving output ... done (0.111544 sec) -------------------------------------------------------------------------- ================================= STEP 1 ================================= -------------------------------------------------------------------------- Current time : 0.00000000 [ ] Tentative time step : 10.00000000 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 7.310266752999e+01 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 2.133540043787e+01 1 KSP Residual norm 1.859427686320e-02 2 KSP Residual norm 2.899733401244e-05 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 1.649877042896e-04 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 2.45737 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 1.056315829386e-06 |Div|_2 = 3.650679845667e-05 Momentum: |mRes|_2 = 1.608980926960e-04 -------------------------------------------------------------------------- Actual time step : 7.69851 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD CELL) injected 1 markers and deleted 0 markers in 3.0160e-04 s Marker control [0]: (AVD YZED) injected 6 markers and deleted 0 markers in 7.6191e-04 s Marker control [0]: (AVD XZED) injected 8 markers and deleted 0 markers in 1.3073e-03 s Marker control [0]: (AVD XYED) injected 2 markers and deleted 0 markers in 3.4218e-04 s -------------------------------------------------------------------------- Saving output ... done (0.145379 sec) -------------------------------------------------------------------------- ================================= STEP 2 ================================= -------------------------------------------------------------------------- Current time : 7.69851107 [ ] Tentative time step : 7.69851107 [ ] -------------------------------------------------------------------------- 0 SNES Function norm 1.307661178463e+02 0 PICARD ||F||/||F0||=1.000000e+00 Residual norms for js_ solve. 0 KSP Residual norm 1.189285812726e+00 1 KSP Residual norm 1.071718651319e-03 2 KSP Residual norm 2.121756434235e-06 Linear js_ solve converged due to CONVERGED_RTOL iterations 2 1 SNES Function norm 5.789132168326e-04 -------------------------------------------------------------------------- SNES Convergence Reason : maximum iterations reached Number of iterations : 1 SNES solution time : 2.16649 (sec) -------------------------------------------------------------------------- Residual summary: Continuity: |Div|_inf = 8.594135843254e-08 |Div|_2 = 7.340971818893e-07 Momentum: |mRes|_2 = 5.789127513924e-04 -------------------------------------------------------------------------- Actual time step : 8.25319 [ ] -------------------------------------------------------------------------- Marker control [0]: (AVD YZED) injected 5 markers and deleted 0 markers in 7.5470e-04 s Marker control [0]: (AVD XZED) injected 4 markers and deleted 0 markers in 6.1112e-04 s Marker control [0]: (AVD XYED) injected 7 markers and deleted 0 markers in 1.0618e-03 s -------------------------------------------------------------------------- Saving output ... done (0.220923 sec) -------------------------------------------------------------------------- =========================== SOLUTION IS DONE! ============================ -------------------------------------------------------------------------- Total solution time : 5.50975 (sec) -------------------------------------------------------------------------- cores_compute = 2 Fatal error in internal_Init_thread: Other MPI error, error stack: internal_Init_thread(67)...........: MPI_Init_thread(argc=0x7fffb4eb957c, argv=0x7fffb4eb9570, required=1, provided=0x7fffb4eb913c) failed MPII_Init_thread(234)..............: MPID_Init(67)......................: init_world(171)....................: channel initialization failed MPIDI_CH3_Init(84).................: MPID_nem_init(314).................: MPID_nem_tcp_init(175).............: MPID_nem_tcp_get_business_card(397): GetSockInterfaceAddr(370)..........: gethostbyname failed, LaMEM-primary-BACmXBbi (errno 1) run LaMEM: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/runLaMEM.jl:4 Got exception outside of a @test failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/bin/mpiexec -n 2 /home/pkgeval/.julia/artifacts/cd461744844630cc33fbd2e7a8e795b56651d039/bin/LaMEM -ParamFile /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/input_files/FallingBlock_DirectSolver.dat '-nstep_max 5'`,["CI=true", "UCX_MEMTYPE_CACHE=no", "OPENBLAS_NUM_THREADS=1", "OPENBLAS_MAIN_FREE=1", "JULIA_CPU_THREADS=1", "JULIA_LOAD_PATH=@:/tmp/jl_0G9Bl8", "FONTCONFIG_FILE=/home/pkgeval/.julia/artifacts/258f7271ca555a7634c0fe8b8508f69334673a89/etc/fonts/fonts.conf", "ZES_ENABLE_SYSMAN=1", "PYTHON=", "R_HOME=*", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "UCX_ERROR_SIGNALS=SIGILL,SIGBUS,SIGFPE", "JULIA_PKG_PRECOMPILE_AUTO=0", "FONTCONFIG_PATH=/home/pkgeval/.julia/artifacts/258f7271ca555a7634c0fe8b8508f69334673a89/etc/fonts", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/e83428c736a7117825caecd465ca39de72e835b8/lib:/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/lib:/home/pkgeval/.julia/artifacts/0a6a41be79ef85f32aa7d8529d4aebf9ef8ab030/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_complex_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_complex_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_real_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/single_real_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_complex_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_complex_Int64/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int32/lib:/home/pkgeval/.julia/artifacts/3f1a00f1080275e347bfbcf5d11aac546fc87017/lib/petsc/double_real_Int64_deb/lib:/home/pkgeval/.julia/artifacts/cd461744844630cc33fbd2e7a8e795b56651d039/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib:/opt/julia/bin/../lib/julia:/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/lib:/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "HOME=/home/pkgeval", "JULIA_PKGEVAL=true", "OMP_NUM_THREADS=1", "JULIA_NUM_THREADS=1", "VECLIB_MAXIMUM_THREADS=1", "PATH=/home/pkgeval/.julia/artifacts/0ed4137b58af5c5e3797cb0c400e60ed7c308bae/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/julia/bin", "DISPLAY=:1", "PKGEVAL=true", "LANG=C.UTF-8"]), ProcessExited(15)) [15] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run @ ./process.jl:523 [inlined] [4] run_lamem(ParamFile::String, cores::Int64, args::String; wait::Bool, deactivate_multithreads::Bool) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem.jl:0 [5] run_lamem(ParamFile::String, cores::Int64, args::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem.jl:50 [6] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runLaMEM.jl:7 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [8] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runLaMEM.jl:36 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [12] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:7 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [17] _start() @ Base ./client.jl:577 Saved file: test_data.vts Saved file: test_data_phase.vts read LaMEM output: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/read_timestep.jl:5 Got exception outside of a @test SystemError: opening file "/home/pkgeval/.julia/packages/LaMEM/M6C0P/test/example_1/example_1/example_phase/example_2/example_1/PlumeLithosphereInteraction_passive_tracers.pvd": No such file or directory Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:186 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing) @ Base ./iostream.jl:327 [3] open @ ./iostream.jl:306 [inlined] [4] open(f::Base.var"#348#349"{@Kwargs{}}, args::String; kwargs::@Kwargs{}) @ Base ./io.jl:425 [5] open @ ./io.jl:424 [inlined] [6] #readlines#346 @ ./io.jl:720 [inlined] [7] readlines @ ./io.jl:719 [inlined] [8] readPVD(FileName::String) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:383 [9] read_LaMEM_simulation(FileName::String, DirName::String; phase::Bool, surf::Bool, passive_tracers::Bool) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:593 [10] read_LaMEM_simulation @ ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:581 [inlined] [11] read_LaMEM_timestep(FileName::String, TimeStep::Int64, DirName::String; fields::Nothing, phase::Bool, surf::Bool, passive_tracers::Bool, last::Bool) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:550 [12] read_LaMEM_timestep @ ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:548 [inlined] [13] kwcall(::@NamedTuple{passive_tracers::Bool}, ::typeof(read_LaMEM_timestep), FileName::String, TimeStep::Int64) @ LaMEM.IO_functions ~/.julia/packages/LaMEM/M6C0P/src/read_timestep.jl:548 [14] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/read_timestep.jl:8 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [16] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/read_timestep.jl:51 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [20] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:8 [inlined] [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [22] top-level scope @ none:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [25] _start() @ Base ./client.jl:577 No partitioning file required for 1 core model setup run lamem mode save grid test: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/run_lamem_save_grid_test.jl:3 Got exception outside of a @test MethodError: no method matching length(::Nothing) The function `length` exists, but no method is defined for this combination of argument types. Closest candidates are: length(!Matched::Compiler.MethodLookupResult) @ Base /opt/julia/share/julia/Compiler/src/methodtable.jl:10 length(!Matched::LightXML.XBuffer) @ LightXML ~/.julia/packages/LightXML/SEk90/src/utils.jl:17 length(!Matched::Base.EnvDict) @ Base env.jl:232 ... Stacktrace: [1] run_lamem_save_grid(ParamFile::String, cores::Int64; verbose::Bool, directory::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:92 [2] kwcall(::@NamedTuple{directory::String}, ::typeof(run_lamem_save_grid), ParamFile::String, cores::Int64) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/run_lamem_save_grid.jl:76 [3] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/run_lamem_save_grid_test.jl:5 [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/run_lamem_save_grid_test.jl:11 [inlined] [6] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [7] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [9] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:9 [inlined] [10] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [11] top-level scope @ none:6 [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [14] _start() @ Base ./client.jl:577 Saved file: Model3D.vts Test mesh refinement: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/mesh_refinement_test.jl:7 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/mesh_refinement_test.jl:13 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/mesh_refinement_test.jl:29 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:10 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:577 in expression starting at none:1 Read logfile: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/read_logfile.jl:7 Got exception outside of a @test SystemError: opening file "input_files/128_cores_104812.txt": No such file or directory Stacktrace: [1] systemerror(p::String, errno::Int32; extrainfo::Nothing) @ Base ./error.jl:186 [2] open(fname::String; lock::Bool, read::Nothing, write::Nothing, create::Nothing, truncate::Nothing, append::Nothing) @ Base ./iostream.jl:327 [3] open @ ./iostream.jl:306 [inlined] [4] read_LaMEM_logfile(Filename::String; ID::Nothing, header::Bool) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/utils_Run.jl:81 [5] read_LaMEM_logfile(Filename::String) @ LaMEM.Run ~/.julia/packages/LaMEM/M6C0P/src/utils_Run.jl:78 [6] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/read_logfile.jl:9 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [8] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/read_logfile.jl:10 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [12] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:11 [inlined] [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [17] _start() @ Base ./client.jl:577 Saved file: Model3D.vts filesize compression: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_compression.jl:6 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_compression.jl:7 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_compression.jl:23 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:12 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:577 in expression starting at none:1 rheology = Phase 0 (matrix): rho = 3000.0 eta = 1.0e20 ┌ Warning: Your initial `Temp` grid is constant, as is your initial `Phases` grid. │ Is that intended? │ In most cases, you would want to set some variability in the initial conditions, │ for example with the `GeophysicalModelGenerator` function `add_sphere!(model,cen=(0.0,0.0,0.0), radius=(0.15, ))` └ @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/ErrorChecking.jl:22 Saved file: Model3D.vts GeoParams 0D rheology: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_GeoParams_integration.jl:5 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 ┌[11] run_lamem │ @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] ╰──── repeated 2 times [13] stress_strainrate_0D(rheology::Phase, ε_vec::Vector{Float64}; n::Int64, T::Int64, nstep_max::Int64, clean::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Utils.jl:467 [14] kwcall(::@NamedTuple{T::Int64, nstep_max::Int64}, ::typeof(stress_strainrate_0D), rheology::Phase, ε_vec::Vector{Float64}) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Utils.jl:450 [15] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_GeoParams_integration.jl:7 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_GeoParams_integration.jl:16 [inlined] [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [19] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [20] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [21] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:13 [inlined] [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [23] top-level scope @ none:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [26] _start() @ Base ./client.jl:577 in expression starting at none:1 Saved file: Model3D.vts Saved file: Model3D.vts Subduction3D: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:13 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/example_scripts/Subduction3D.jl:99 [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:6 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:14 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:15 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [23] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:14 [inlined] [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:577 in expression starting at none:1 in expression starting at /home/pkgeval/.julia/packages/LaMEM/M6C0P/example_scripts/Subduction3D.jl:91 caused by: LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem(model::Model, cores::Int64, args::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [12] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/example_scripts/Subduction3D.jl:94 [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:6 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [16] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:14 [inlined] [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [18] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:15 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [22] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:14 [inlined] [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [24] top-level scope @ none:6 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [27] _start() @ Base ./client.jl:577 in expression starting at none:1 WARNING: importing deprecated binding Makie.Combined into CairoMakie. , use Plot instead. WARNING: importing deprecated binding Makie.ContinuousSurface into CairoMakie. , use VertexGrid instead. WARNING: importing deprecated binding Makie.DiscreteSurface into CairoMakie. , use CellGrid instead. Saved file: Model3D.vts StrengthEnvelop: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:23 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/example_scripts/StrengthEnvelop.jl:23 [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:6 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:24 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:25 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [23] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:14 [inlined] [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:577 in expression starting at none:1 in expression starting at /home/pkgeval/.julia/packages/LaMEM/M6C0P/example_scripts/StrengthEnvelop.jl:23 Saved file: Model3D.vts Saved file: Model3D.vts TM_Subduction_example: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:33 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/example_scripts/TM_Subduction_example.jl:249 [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:6 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:34 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:35 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [23] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:14 [inlined] [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:577 in expression starting at none:1 in expression starting at /home/pkgeval/.julia/packages/LaMEM/M6C0P/example_scripts/TM_Subduction_example.jl:241 caused by: LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem(model::Model, cores::Int64, args::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [12] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/example_scripts/TM_Subduction_example.jl:244 [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:6 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [16] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:34 [inlined] [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [18] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:35 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [20] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [22] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:14 [inlined] [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [24] top-level scope @ none:6 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [27] _start() @ Base ./client.jl:577 in expression starting at none:1 Adding Plots.jl plotting extensions for LaMEM Saved file: Model3D.vts PassiveTracers: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:45 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/example_scripts/PassiveTracers.jl:13 [14] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [15] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:6 [16] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [17] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:46 [inlined] [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_examples.jl:47 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [22] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [23] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:14 [inlined] [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:577 in expression starting at none:1 in expression starting at /home/pkgeval/.julia/packages/LaMEM/M6C0P/example_scripts/PassiveTracers.jl:13 Saved file: Model3D.vts surface erosion: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_erosion.jl:7 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_erosion.jl:8 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_erosion.jl:46 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:15 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:577 in expression starting at none:1 Saved file: Model3D.vts sedimentation test: Error During Test at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/test_sedimentation.jl:7 Got exception outside of a @test LoadError: UndefVarError: `@var` not defined in `Base.Docs` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool) @ Base ./flfrontend.jl:24 [2] eval(m::Module, e::Any) @ Core ./boot.jl:489 [3] EvalInto @ ./boot.jl:494 [inlined] [4] get_doc(structure::Type, field::Symbol) @ LaMEM ~/.julia/packages/LaMEM/M6C0P/src/DocUtils.jl:13 [5] write_LaMEM_inputFile(io::IOStream, d::Time) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Time.jl:109 [6] write_LaMEM_inputFile(d::Model, fname::String; dir::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:174 [7] write_LaMEM_inputFile(d::Model, fname::String) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:156 [8] create_initialsetup(model::Model, cores::Int64, args::String; verbose::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:282 [9] create_initialsetup @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:273 [inlined] [10] run_lamem(model::Model, cores::Int64, args::String; wait::Bool) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:200 [11] run_lamem @ ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [inlined] [12] run_lamem(model::Model, cores::Int64) @ LaMEM.LaMEM_Model ~/.julia/packages/LaMEM/M6C0P/src/LaMEM_ModelGeneration/Model.jl:195 [13] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/test_sedimentation.jl:8 [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/test_sedimentation.jl:43 [inlined] [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:6 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [19] macro expansion @ ~/.julia/packages/LaMEM/M6C0P/test/runtests.jl:16 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [21] top-level scope @ none:6 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [24] _start() @ Base ./client.jl:577 in expression starting at none:1 Test Summary: | Pass Error Total Time LaMEM.jl | 8 18 26 14m14.1s Julia setup | 1 1 50.2s velocity box | 1 1 0.7s phase transitions | 1 1 7.1s phase diagrams | 1 1 3.3s build-in geometries | 1 1 1.0s run LaMEM | 2 1 3 19.6s read LaMEM output | 5 1 6 47.0s run lamem mode save grid test | 1 1 2 2.1s Test mesh refinement | 1 1 1.8s Read logfile | 1 1 1.1s filesize compression | 1 1 0.3s GeoParams 0D rheology | 1 1 2.3s examples in /scripts | 4 4 11m51.5s Subduction3D | 1 1 9.2s StrengthEnvelop | 1 1 6m46.0s TM_Subduction_example | 1 1 13.8s PassiveTracers | 1 1 4m42.5s surface erosion | 1 1 3.6s sedimentation test | 1 1 0.3s RNG of the outermost testset: Random.Xoshiro(0xb5f3053b03bd0a46, 0xf1e0a0b70db716a3, 0x500b1303c9cdf5c4, 0xee614e10d88b6b60, 0xa07568e909b80aa3) ERROR: LoadError: Some tests did not pass: 8 passed, 0 failed, 18 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/LaMEM/M6C0P/test/runtests.jl:4 Testing failed after 929.5s ERROR: LoadError: Package LaMEM errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1121.47s: illegal method overwrites during precompilation