Package evaluation to test FeatureSelection on Julia 1.14.0-DEV.30 (073666df8b*) started at 2025-11-04T13:36:51.261 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.35s ################################################################################ # Installation # Installing FeatureSelection... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [33837fe5] + FeatureSelection v0.2.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [33837fe5] + FeatureSelection v0.2.3 [82899510] + IteratorInterfaceExtensions v1.0.0 [e80e1ace] + MLJModelInterface v1.12.0 [bac558e1] + OrderedCollections v1.8.1 [30f210dd] + ScientificTypesBase v3.0.0 [64bff920] + StatisticalTraits v3.5.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [4ec0a83e] + Unicode v1.11.0 Installation completed after 3.95s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 3014.6 ms ✓ FeatureSelection 1 dependency successfully precompiled in 3 seconds. 18 already precompiled. Precompilation completed after 16.08s ################################################################################ # Testing # Testing FeatureSelection Status `/tmp/jl_5PtsIX/Project.toml` [4c88cf16] Aqua v0.8.14 [31c24e10] Distributions v0.25.122 [33837fe5] FeatureSelection v0.2.3 ⌃ [a7f614a8] MLJBase v1.9.2 ⌃ [c6f25543] MLJDecisionTreeInterface v0.4.2 [e80e1ace] MLJModelInterface v1.12.0 ⌅ [5ae90465] MLJScikitLearnInterface v0.6.1 [03970b2e] MLJTuning v0.8.8 [30f210dd] ScientificTypesBase v3.0.0 [860ef19b] StableRNGs v1.0.3 ⌅ [a19d573c] StatisticalMeasures v0.2.1 [bd369af6] Tables v1.12.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_5PtsIX/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [a9b6321e] Atomix v1.1.2 [198e06fe] BangBang v0.4.6 [9718e550] Baselet v0.1.1 ⌅ [324d7699] CategoricalArrays v0.10.8 ⌅ [af321ab8] CategoricalDistributions v0.1.15 [d360d2e6] ChainRulesCore v1.26.0 [3da002f7] ColorTypes v0.12.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [992eb4ea] CondaPkg v0.2.33 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.2 [e2d170a0] DataValueInterfaces v1.0.0 [7806a523] DecisionTree v0.12.4 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [33837fe5] FeatureSelection v0.2.3 [1a297f60] FillArrays v1.14.0 [53c48c17] FixedPointNumbers v0.8.5 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [22cec73e] InitialValues v0.3.1 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.39 [b964fa9f] LaTeXStrings v1.4.0 [a5e1c1ea] LatinHypercubeSampling v1.9.0 ⌅ [92ad9a40] LearnAPI v1.0.1 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 ⌃ [a7f614a8] MLJBase v1.9.2 ⌃ [c6f25543] MLJDecisionTreeInterface v0.4.2 [e80e1ace] MLJModelInterface v1.12.0 ⌅ [5ae90465] MLJScikitLearnInterface v0.6.1 [03970b2e] MLJTuning v0.8.8 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.16 [128add7d] MicroCollections v0.2.0 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [872c559c] NNlib v0.9.31 [71a1bf82] NameResolution v0.1.5 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [8162dcfd] PrettyPrint v0.2.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [6099a3de] PythonCall v0.9.28 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [321657f4] ScientificTypes v3.1.1 [30f210dd] ScientificTypesBase v3.0.0 [6e75b9c4] ScikitLearnBase v0.5.0 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.3 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 ⌅ [a19d573c] StatisticalMeasures v0.2.1 [c062fc1d] StatisticalMeasuresBase v0.1.3 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.7 [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [28d57a85] Transducers v0.4.85 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [e17b2a0c] UnsafePointers v1.0.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Aqua.jl | 11 11 1m51.3s Test Summary: | Pass Total Time Feat Selector | 12 12 9.0s [ Info: Training machine(DeterministicRecursiveFeatureElimination(model = RandomForestRegressor(max_depth = -1, …), …), …). [ Info: Fitting estimator with 10 features. [ Info: Fitting estimator with 9 features. [ Info: Fitting estimator with 8 features. [ Info: Fitting estimator with 7 features. [ Info: Fitting estimator with 6 features. [ Info: Fitting estimator with 5 features. [ Info: Training machine(ProbabilisticRecursiveFeatureElimination(model = RandomForestClassifier(max_depth = -1, …), …), …). [ Info: Fitting estimator with 10 features. [ Info: Fitting estimator with 9 features. [ Info: Fitting estimator with 8 features. [ Info: Fitting estimator with 7 features. [ Info: Fitting estimator with 6 features. [ Info: Fitting estimator with 5 features. [ Info: Training machine(DeterministicRecursiveFeatureElimination(model = RandomForestRegressor(max_depth = -1, …), …), …). [ Info: Fitting estimator with 10 features. [ Info: Fitting estimator with 9 features. [ Info: Fitting estimator with 8 features. [ Info: Fitting estimator with 7 features. [ Info: Fitting estimator with 6 features. [ Info: Fitting estimator with 5 features. Test Summary: | Pass Total Time RecursiveFeatureElimination | 27 27 53.9s [ Info: Training machine(DeterministicRecursiveFeatureElimination(model = SVMRegressor(kernel = linear, …), …), …). [ Info: Fitting estimator with 10 features. [ Info: Fitting estimator with 9 features. [ Info: Fitting estimator with 8 features. [ Info: Fitting estimator with 7 features. [ Info: Fitting estimator with 6 features. [ Info: Fitting estimator with 5 features. [ Info: Training machine(ProbabilisticTunedModel(model = DeterministicRecursiveFeatureElimination(model = SVMRegressor(kernel = linear, …), …), …), …). [ Info: Attempting to evaluate 10 models. ┌ Error: Problem fitting the machine machine(ProbabilisticTunedModel(model = DeterministicRecursiveFeatureElimination(model = SVMRegressor(kernel = linear, …), …), …), …). └ @ MLJBase ~/.julia/packages/MLJBase/GY2fM/src/machines.jl:695 [ Info: Running type checks... [ Info: Type checks okay. Compare results for RFE with scikit-learn: Error During Test at /home/pkgeval/.julia/packages/FeatureSelection/yyZAz/test/models/rfe.jl:111 Got exception outside of a @test UndefVarError: `ltm52` not defined in `Random` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty @ ./Base_compiler.jl:50 [inlined] [2] _shuffle!(r::StableRNGs.LehmerRNG, a::Vector{FeatureSelection.DeterministicRecursiveFeatureElimination{SVMRegressor}}) @ StableRNGs ~/.julia/packages/StableRNGs/t609C/src/StableRNGs.jl:154 [3] shuffle! @ ~/.julia/packages/StableRNGs/t609C/src/StableRNGs.jl:144 [inlined] [4] shuffle @ ~/.julia/packages/StableRNGs/t609C/src/StableRNGs.jl:142 [inlined] [5] grid(rng::StableRNGs.LehmerRNG, prototype::FeatureSelection.DeterministicRecursiveFeatureElimination{SVMRegressor}, fields::Vector{Symbol}, iterators::Vector{Vector{Float64}}) @ MLJTuning ~/.julia/packages/MLJTuning/vMe8s/src/range_methods.jl:32 [6] setup(tuning::Grid, model::FeatureSelection.DeterministicRecursiveFeatureElimination{SVMRegressor}, user_range::NominalRange{Float64, 10}, n::Nothing, verbosity::Int64) @ MLJTuning ~/.julia/packages/MLJTuning/vMe8s/src/strategies/grid.jl:142 [7] fit(::MLJTuning.ProbabilisticTunedModel{Grid, FeatureSelection.DeterministicRecursiveFeatureElimination{SVMRegressor}, Nothing}, ::Int64, ::Tables.MatrixTable{Matrix{Float64}}, ::Vector{Float64}) @ MLJTuning ~/.julia/packages/MLJTuning/vMe8s/src/tuned_models.jl:766 [8] fit_only!(mach::Machine{MLJTuning.ProbabilisticTunedModel{Grid, FeatureSelection.DeterministicRecursiveFeatureElimination{SVMRegressor}, Nothing}, MLJTuning.ProbabilisticTunedModel{Grid, FeatureSelection.DeterministicRecursiveFeatureElimination{SVMRegressor}, Nothing}, false}; rows::Nothing, verbosity::Int64, force::Bool, composite::Nothing) @ MLJBase ~/.julia/packages/MLJBase/GY2fM/src/machines.jl:693 [9] fit_only! @ ~/.julia/packages/MLJBase/GY2fM/src/machines.jl:617 [inlined] [10] #fit!#66 @ ~/.julia/packages/MLJBase/GY2fM/src/machines.jl:790 [inlined] [11] fit!(mach::Machine{MLJTuning.ProbabilisticTunedModel{Grid, FeatureSelection.DeterministicRecursiveFeatureElimination{SVMRegressor}, Nothing}, MLJTuning.ProbabilisticTunedModel{Grid, FeatureSelection.DeterministicRecursiveFeatureElimination{SVMRegressor}, Nothing}, false}) @ MLJBase ~/.julia/packages/MLJBase/GY2fM/src/machines.jl:787 [12] top-level scope @ ~/.julia/packages/FeatureSelection/yyZAz/test/models/rfe.jl:113 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [14] macro expansion @ ~/.julia/packages/FeatureSelection/yyZAz/test/models/rfe.jl:163 [inlined] [15] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [16] top-level scope @ ~/.julia/packages/FeatureSelection/yyZAz/test/runtests.jl:10 [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:489 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [21] _start() @ Base ./client.jl:577 Test Summary: | Error Total Time Compare results for RFE with scikit-learn | 1 1 45.6s RNG of the outermost testset: Random.Xoshiro(0x39b1fb4dbe8f76a4, 0x84af51951efdfa25, 0x80bce8c3d02f011f, 0x370b51264dd85caa, 0xccbfb3ec4d5ef354) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/FeatureSelection/yyZAz/test/models/rfe.jl:111 in expression starting at /home/pkgeval/.julia/packages/FeatureSelection/yyZAz/test/runtests.jl:10 Testing failed after 692.18s ERROR: LoadError: Package FeatureSelection errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 747.4s: package tests unexpectedly errored