Package evaluation to test ExactWrightFisher on Julia 1.14.0-DEV.30 (073666df8b*) started at 2025-11-04T17:37:57.241 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.75s ################################################################################ # Installation # Installing ExactWrightFisher... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [8c1589a6] + ExactWrightFisher v0.1.12 Updating `~/.julia/environments/v1.14/Manifest.toml` [c3fe647b] + AbstractAlgebra v0.47.3 [66dad0bd] + AliasTables v1.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.2 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [8c1589a6] + ExactWrightFisher v0.1.12 [1a297f60] + FillArrays v1.14.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [2edaba10] + Nemo v0.52.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [fb686558] + RandomExtensions v0.4.4 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [4c63d2b9] + StatsFuns v1.5.2 [e134572f] + FLINT_jll v301.300.102+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [3a97d323] + MPFR_jll v4.2.2+0 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 4.89s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 7431.4 ms ✓ ExactWrightFisher 1 dependency successfully precompiled in 8 seconds. 59 already precompiled. Precompilation completed after 21.17s ################################################################################ # Testing # Testing ExactWrightFisher Status `/tmp/jl_Z8YSFq/Project.toml` [31c24e10] Distributions v0.25.122 [8c1589a6] ExactWrightFisher v0.1.12 [2edaba10] Nemo v0.52.3 [92933f4c] ProgressMeter v1.11.0 [276daf66] SpecialFunctions v2.6.1 [4c63d2b9] StatsFuns v1.5.2 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Z8YSFq/Manifest.toml` [c3fe647b] AbstractAlgebra v0.47.3 [66dad0bd] AliasTables v1.1.3 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.2 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [8c1589a6] ExactWrightFisher v0.1.12 [1a297f60] FillArrays v1.14.0 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [2edaba10] Nemo v0.52.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [fb686558] RandomExtensions v0.4.4 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.7 [4c63d2b9] StatsFuns v1.5.2 [e134572f] FLINT_jll v301.300.102+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [3a97d323] MPFR_jll v4.2.2+0 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Testing Running tests... Testing... Test Summary: | Pass Total Time helper functions | 15 15 6.2s 6.948887 seconds (5.21 M allocations: 275.686 MiB, 1.47% gc time, 99.34% compilation time: 2% of which was recompilation) Test Summary: | Pass Total Time testing Ancestor(A∞) functions | 37 37 1m26.3s 86.654616 seconds (202.59 M allocations: 10.693 GiB, 13.33% gc time, 8.68% compilation time) Test Summary: | Pass Total Time testing approximate Ancestor(A∞) functions | 3 3 0.1s 0.176914 seconds (54.22 k allocations: 2.727 MiB, 89.88% compilation time) kvec = [4, 5, 5, 6, 6, 6, 6, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 5, 5, 5, 5, 5, 5] S_kvec_M_BOTH = Nemo.ArbFieldElem[[-1122356852547.868845637122861097715065729303161555426610938684904225601574 +/- 2.48e-61], [1656805132233.661875391728083125338318932187371023550227053657153063630665 +/- 5.88e-61]], U = 0.07336635446929285 kvec = [5, 6, 6, 7, 7, 7, 7, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 6, 6, 6, 6, 6, 6] S_kvec_M_BOTH = Nemo.ArbFieldElem[[-379917688363.241798947470362389798366510231909011743080820398646015357710 +/- 2.45e-61], [685982935677.033005109117450030037015245789893404186135322326301660233328 +/- 2.77e-61]], U = 0.07336635446929285 kvec = [6, 7, 7, 8, 8, 8, 8, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 7, 7, 7, 7, 7, 7] S_kvec_M_BOTH = Nemo.ArbFieldElem[[-87990209913.062948885012767415603710886921421299766113562405101213209007 +/- 2.83e-61], [191385650181.982735758774283273612954068520054087690938301257682129791722 +/- 2.43e-61]], U = 0.07336635446929285 kvec = [7, 8, 8, 9, 9, 9, 9, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 8, 8, 8, 8, 8, 8] S_kvec_M_BOTH = Nemo.ArbFieldElem[[-14304142309.770676405384573430695939487387763697265882200425305362184442 +/- 5.09e-61], [37030935678.188908517159546023453314231556132945252915614101750603237243 +/- 5.74e-61]], U = 0.07336635446929285 kvec = [8, 9, 9, 10, 10, 10, 10, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 9, 9, 9, 9, 9, 9] S_kvec_M_BOTH = Nemo.ArbFieldElem[[-1665781695.747302030334676883770430077386683065789036705613364053741996 +/- 3.04e-61], [5083551330.581034855432522251504929703688104865219347270337844880334020 +/- 2.60e-61]], U = 0.07336635446929285 kvec = [9, 10, 10, 11, 11, 11, 11, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 10, 10, 10, 10, 10, 10] S_kvec_M_BOTH = Nemo.ArbFieldElem[[-141274005.855485740280864478606062613199878708043781699234166748120438 +/- 5.51e-61], [504267300.322598074701738536120576517884450668413527657425605592875887 +/- 7.11e-61]], U = 0.07336635446929285 kvec = [10, 11, 11, 12, 12, 12, 12, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 11, 11, 11, 11, 11, 11] S_kvec_M_BOTH = Nemo.ArbFieldElem[[-8844405.774395850006394948875788191209074259859075347282999940901172 +/- 2.97e-61], [36687626.758827863245137070597511680781702497813695658110390485123038 +/- 2.82e-61]], U = 0.07336635446929285 kvec = [11, 12, 12, 13, 13, 13, 13, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 12, 12, 12, 12, 12, 12] S_kvec_M_BOTH = Nemo.ArbFieldElem[[-413352.702423903440207779504441333897254139126557444412692332424862 +/- 5.69e-61], [1981944.147099526107870140344768473956614952243222212314249108119777 +/- 2.69e-61]], U = 0.07336635446929285 kvec = [12, 13, 13, 14, 14, 14, 14, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 13, 13, 13, 13, 13, 13] S_kvec_M_BOTH = Nemo.ArbFieldElem[[-14558.486612199973416003836831555942644764339086290611552878067546 +/- 4.60e-61], [80325.671740279813298946328228137471587633481641712067263848742579 +/- 4.27e-61]], U = 0.07336635446929285 kvec = [13, 14, 14, 15, 15, 15, 15, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 14, 14, 14, 14, 14, 14] S_kvec_M_BOTH = Nemo.ArbFieldElem[[-388.984757233658758732222460538066511585069048562979566604731260 +/- 5.78e-61], [2464.351819474594209048811406595993722307290223782216575468158140 +/- 7.28e-61]], U = 0.07336635446929285 kvec = [14, 15, 15, 16, 16, 16, 16, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 15, 15, 15, 15, 15, 15] S_kvec_M_BOTH = Nemo.ArbFieldElem[[-7.359395198187307781501220655887686354966919904057703527810047 +/- 4.41e-61], [58.238772657494741519683194652174969025723736285211834195817218 +/- 5.60e-61]], U = 0.07336635446929285 kvec = [15, 16, 16, 17, 17, 17, 17, 18, 18, 18, 18, 18, 18, 18, 18, 18, 18, 18, 18, 18, 18, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 16, 16, 16, 16, 16, 16] S_kvec_M_BOTH = Nemo.ArbFieldElem[[0.491632434503653238476497790980110369167234779351382580834744 +/- 4.56e-61], [1.651728605916412462968508104696263904327458125748122812085394 +/- 4.59e-61]], U = 0.07336635446929285 Test Summary: | Pass Total Time testing Wright-Fisher transition and simulation functions | 59 59 10.8s 10.829953 seconds (8.10 M allocations: 428.978 MiB, 4.26% gc time, 90.26% compilation time) Test Summary: | Pass Total Time testing Wright-Fisher semi exact transition and simulation functions | 9 9 0.5s 1.071618 seconds (695.09 k allocations: 35.751 MiB, 79.52% compilation time) Testing ExactWrightFisher tests passed Testing completed after 123.0s PkgEval succeeded after 170.06s