Package evaluation to test EcologicalNetworksDynamics on Julia 1.14.0-DEV.30 (073666df8b*) started at 2025-11-05T02:22:49.541 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.09s ################################################################################ # Installation # Installing EcologicalNetworksDynamics... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [2fd9189a] + EcologicalNetworksDynamics v0.3.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [a95523ee] + AlmostBlockDiagonals v0.1.10 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.0 [aae01518] + BandedMatrices v1.10.1 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] + BoundaryValueDiffEq v5.18.0 [7227322d] + BoundaryValueDiffEqAscher v1.8.0 [56b672f2] + BoundaryValueDiffEqCore v1.11.1 [85d9eb09] + BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] + BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] + BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] + BoundaryValueDiffEqShooting v1.9.0 [70df07ce] + BracketingNonlinearSolve v1.5.0 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.2 [abce61dc] + Decimals v0.5.1 [bcd4f6db] + DelayDiffEq v5.61.0 [2b5f629d] + DiffEqBase v6.190.2 [459566f4] + DiffEqCallbacks v4.10.1 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [0c46a032] + DifferentialEquations v7.17.0 [a0c0ee7d] + DifferentiationInterface v0.7.10 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [2fd9189a] + EcologicalNetworksDynamics v0.3.1 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.15 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [411431e0] + Extents v0.1.6 [9d29842c] + FastAlmostBandedMatrices v0.1.5 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [a4df4552] + FastPower v1.2.0 [1a297f60] + FillArrays v1.14.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.2.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.6 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.6.0 [86223c79] + Graphs v1.13.1 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.19.1 [ba0b0d4f] + Krylov v0.10.2 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.8.0 [2d8b4e74] + LevyArea v1.0.0 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [7ed4a6bd] + LinearSolve v3.46.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [b8b640a6] + Mangal v0.5.1 [d125e4d3] + ManualMemory v0.1.8 [a3b82374] + MatrixFactorizations v3.1.3 [bb5d69b7] + MaybeInplace v0.1.4 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [d41bc354] + NLSolversBase v7.10.0 [2774e3e8] + NLsolve v4.5.1 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.12.0 [be0214bd] + NonlinearSolveBase v2.0.0 [5959db7a] + NonlinearSolveFirstOrder v1.9.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.10.0 [26075421] + NonlinearSolveSpectralMethods v1.5.0 [4d8831e6] + OpenSSL v1.6.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [1dea7af3] + OrdinaryDiffEq v6.103.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 [6ad6398a] + OrdinaryDiffEqBDF v1.10.1 [bbf590c4] + OrdinaryDiffEqCore v1.36.0 [50262376] + OrdinaryDiffEqDefault v1.8.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.16.1 [9286f039] + OrdinaryDiffEqExplicitRK v1.4.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.8.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.9.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.16.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.5.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.7.0 [521117fe] + OrdinaryDiffEqLinear v1.6.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.6.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.7.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.15.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.4.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.6.0 [5b33eab2] + OrdinaryDiffEqPRK v1.4.0 [04162be5] + OrdinaryDiffEqQPRK v1.4.0 [af6ede74] + OrdinaryDiffEqRKN v1.5.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.18.1 [2d112036] + OrdinaryDiffEqSDIRK v1.7.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.7.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.6.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.4.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.7.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.5.0 [79d7bb75] + OrdinaryDiffEqVerner v1.6.0 [90014a1f] + PDMats v0.11.36 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.39.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.124.0 [19f34311] + SciMLJacobianOperators v0.1.11 [a6db7da4] + SciMLLogging v1.3.1 [c0aeaf25] + SciMLOperators v1.9.0 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [727e6d20] + SimpleNonlinearSolve v2.9.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [9f842d2f] + SparseConnectivityTracer v1.1.2 [0a514795] + SparseMatrixColorings v0.4.23 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [4c63d2b9] + StatsFuns v1.5.2 [9672c7b4] + SteadyStateDiffEq v2.7.0 [789caeaf] + StochasticDiffEq v6.84.0 [7792a7ef] + StrideArraysCore v0.5.8 [f22f4433] + StringCases v0.1.0 [c3572dad] + Sundials v5.1.0 [2efcf032] + SymbolicIndexingInterface v0.3.46 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.10+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [ca45d3f4] + SuiteSparse32_jll v7.11.0+0 [fb77eaff] + Sundials_jll v7.5.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.1s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 3034.5 ms ✓ GeoInterface → GeoInterfaceRecipesBaseExt 5640.3 ms ✓ Mangal 11219.3 ms ✓ NonlinearSolve → NonlinearSolveNLsolveExt 14276.8 ms ✓ BoundaryValueDiffEqCore 13513.2 ms ✓ NonlinearSolve → NonlinearSolveSundialsExt 23761.6 ms ✓ DelayDiffEq 19849.9 ms ✓ StochasticDiffEq 15087.6 ms ✓ BoundaryValueDiffEqAscher 233069.7 ms ✓ BoundaryValueDiffEqFIRK 133040.7 ms ✓ BoundaryValueDiffEqMIRK 17150.6 ms ✓ BoundaryValueDiffEqShooting 17030.8 ms ✓ BoundaryValueDiffEqMIRKN 35998.5 ms ✓ BoundaryValueDiffEq 64569.3 ms ✓ DifferentialEquations 260887.4 ms ✓ EcologicalNetworksDynamics 15 dependencies successfully precompiled in 873 seconds. 334 already precompiled. Precompilation completed after 881.1s ################################################################################ # Testing # Testing EcologicalNetworksDynamics Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_kk2kzp/Project.toml` [5224ae11] + CompatHelperLocal v0.1.27 [e30172f5] + Documenter v1.15.0 [2fd9189a] + EcologicalNetworksDynamics v0.3.1 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [a4af3ec5] + SyntaxTree v1.0.1 Updating `/tmp/jl_kk2kzp/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [00ebfdb7] + CSTParser v3.4.3 ⌅ [a80b9123] + CommonMark v0.8.16 [5224ae11] + CompatHelperLocal v0.1.27 ⌅ [864edb3b] ↓ DataStructures v0.19.2 ⇒ v0.18.22 [e30172f5] + Documenter v1.15.0 [2fd9189a] + EcologicalNetworksDynamics v0.3.1 [d7ba0133] + Git v1.5.0 [c27321d9] + Glob v1.3.1 ⌅ [b5f81e59] + IOCapture v0.2.5 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [0e77f7df] + LazilyInitializedFields v1.3.0 [d0879d2d] + MarkdownAST v0.1.2 [2792f1a3] + RegistryInstances v0.1.0 [a4af3ec5] + SyntaxTree v1.0.1 [0796e94c] + Tokenize v0.5.29 [2e619515] + Expat_jll v2.7.3+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.51.3+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [3fa0cd96] + REPL v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_kk2kzp/Project.toml` [5224ae11] CompatHelperLocal v0.1.27 [a8cc5b0e] Crayons v4.1.1 [abce61dc] Decimals v0.5.1 [2b5f629d] DiffEqBase v6.190.2 [459566f4] DiffEqCallbacks v4.10.1 [0c46a032] DifferentialEquations v7.17.0 [31c24e10] Distributions v0.25.122 [e30172f5] Documenter v1.15.0 [2fd9189a] EcologicalNetworksDynamics v0.3.1 [86223c79] Graphs v1.13.1 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [1914dd2f] MacroTools v0.5.16 [b8b640a6] Mangal v0.5.1 [bac558e1] OrderedCollections v1.8.1 [0bca4576] SciMLBase v2.124.0 [10745b16] Statistics v1.11.1 [f22f4433] StringCases v0.1.0 [a4af3ec5] SyntaxTree v1.0.1 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 Status `/tmp/jl_kk2kzp/Manifest.toml` [47edcb42] ADTypes v1.18.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees 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Testing Running tests... == Test internals. ============================================================= [ Info: Seed set to 93782. test-utils.jl Test Summary: | Pass Total Time Identify metabolic classes, producers, preys and predators | 41 41 7.2s Test Summary: | Pass Total Time Find predators and preys of a given species | 8 8 0.1s Test Summary: | Pass Total Time Find predators sharing at least one prey | 8 8 0.3s Test Summary: | Pass Total Time Find number of resources of each species. | 3 3 0.1s PASSED ------------------------------------------ inputs/test-foodwebs.jl Test Summary: | Pass Total Time Foodwebs from adjacency list. | 22 22 28.3s Test Summary: | Pass Total Time FoodWebs from structural model. | 69 69 13.9s Test Summary: | Pass Total Time Warning if foodweb has disconnected species. | 9 9 1.6s PASSED ------------------------------------------ inputs/test-biological_rates.jl Test Summary: | Pass Total Time Constructors for allometric parameters | 4 4 0.1s Test Summary: | Pass Total Time Computing allometric rates | 6 6 4.0s Test Summary: | Pass Total Time Helper functions for allometric rate computation | 4 4 0.1s PASSED ------------------------------------------ inputs/test-functional_response.jl Test Summary: | Pass Total Time Assimilation efficiency | 3 3 1.6s Test Summary: | Pass Total Time Bioenergetic functional response parameters | 8 8 1.6s Test Summary: | Pass Total Time Linear functional response parameters | 6 6 1.4s Test Summary: | Pass Total Time Classic functional response parameters | 10 10 1.3s Test Summary: | Pass Total Time Bioenergetic functional response functor | 31 31 4.8s Test Summary: | Pass Total Time Linear functional response functor | 22 22 1.9s Test Summary: | Pass Total Time Classic functional response functor | 39 39 12.0s Test Summary: | Pass Total Time Generation of default feeding rates | 8 8 1.7s PASSED ------------------------------------------ inputs/test-environment.jl Test Summary: | Pass Total Time Environment | 2 2 0.1s PASSED ------------------------------------------ inputs/test-nontrophic_interactions.jl Test Summary: | Pass Total Time Non-trophic Interactions: build MultiplexNetwork. | 44 44 11.8s Test Summary: | Pass Total Time Non-trophic Interactions: find potential links. | 9 9 0.6s Test Summary: | Pass Total Time Non-trophic Interactions: draw randomly links. | 60 60 0.1s Test Summary: | Pass Total Time Non-trophic Interactions: build non-trophic adjacency matrix. | 8 8 0.6s PASSED ------------------------------------------ inputs/test-producer_competition.jl Test Summary: | Pass Total Time Build LogisticGrowth with producer competition | 11 11 24.7s PASSED ------------------------------------------ inputs/test-temperature_dependent_rates.jl ┌ Warning: 'A' contains disconnected species w.r.t. trophic interactions. └ @ EcologicalNetworksDynamics.Internals ~/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/Internals/inputs/foodwebs.jl:213 Test Summary: | Pass Total Time Constructors for exponential Boltzmann-Arrhenius parameters | 5 5 0.1s Test Summary: | Pass Total Time Computing exponential Boltzmann-Arhennius rates | 10 10 8.9s Test Summary: | Pass Total Time Helper functions for exponential BA rate computation | 1 1 0.3s Test Summary: | Pass Total Time Exponential Boltzmann-Arrhenius parameter customisation | 5 5 0.2s PASSED ------------------------------------------ model/test-productivity.jl ┌ Warning: Using arrays or dicts to store parameters of different types can hurt performance. │ Consider using tuples instead. └ @ SciMLBase ~/.julia/packages/SciMLBase/RPW6n/src/performance_warnings.jl:33 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 73 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm9LiveRange15isLiveAtIndexesENS_8ArrayRefINS_9SlotIndexEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm14VirtRegAuxInfo16weightCalcHelperERNS_12LiveIntervalEPNS_9SlotIndexES4_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm14VirtRegAuxInfo27calculateSpillWeightAndHintERNS_12LiveIntervalE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13LiveRangeEdit24calculateRegClassAndHintERNS_15MachineFunctionERNS_14VirtRegAuxInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8RAGreedy17selectOrSplitImplERKNS_12LiveIntervalERNS_15SmallVectorImplINS_8RegisterEEERNS_8SmallSetIS5_Lj16ESt4lessIS5_EEERNS_11SmallVectorISt4pairIPS2_NS_10MCRegisterEELj8EEEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8RAGreedy13selectOrSplitERKNS_12LiveIntervalERNS_15SmallVectorImplINS_8RegisterEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm12RegAllocBase16allocatePhysRegsEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8RAGreedy20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1628 addModule at /source/src/jitlayers.cpp:2119 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3648 _jl_invoke at /source/src/gf.c:4108 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #solve_up#30 at /home/pkgeval/.julia/packages/DiffEqBase/p82Yh/src/solve.jl:547 solve_up at /home/pkgeval/.julia/packages/DiffEqBase/p82Yh/src/solve.jl:540 [inlined] #solve#29 at /home/pkgeval/.julia/packages/DiffEqBase/p82Yh/src/solve.jl:530 solve at /home/pkgeval/.julia/packages/DiffEqBase/p82Yh/src/solve.jl:520 unknown function (ip: 0x7ccf0fca6b7e) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #simulate#119 at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/Internals/model/simulate.jl:198 simulate at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/Internals/model/simulate.jl:109 unknown function (ip: 0x7ccf0fc9fe2f) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #simulates#1 at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/runtests.jl:70 simulates at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/runtests.jl:44 unknown function (ip: 0x7ccf48c7d4a1) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2994 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3054 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x7ccf5ceb2b02) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 top-level scope at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/runtests.jl:125 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_invoke at /source/src/gf.c:4123 jl_toplevel_eval_flex at /source/src/toplevel.c:731 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_eval_module_expr at /source/src/toplevel.c:248 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:650 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2994 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3054 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x7ccf5ceb2b02) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2994 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3054 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_36779.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_63030.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7ccf5e7fd249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1223 wait_forever at ./task.jl:1145 jfptr_wait_forever_57186.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007456a0db0010 Total snapshots: 398. Utilization: 0% ╎398 @Base/task.jl:1145 wait_forever() 397╎ 398 @Base/task.jl:1223 wait() [73] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/model/test-productivity.jl:1 _ZN4llvm13SchedBoundary4initEPNS_13ScheduleDAGMIEPKNS_16TargetSchedModelEPNS_14SchedRemainderE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm16GenericScheduler10initializeEPNS_13ScheduleDAGMIE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17ScheduleDAGMILive8scheduleEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_120MachineSchedulerBase15scheduleRegionsERN4llvm17ScheduleDAGInstrsEb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_116MachineScheduler20runOnMachineFunctionERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1628 addModule at /source/src/jitlayers.cpp:2119 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3648 _jl_invoke at /source/src/gf.c:4108 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #solve_up#30 at /home/pkgeval/.julia/packages/DiffEqBase/p82Yh/src/solve.jl:547 solve_up at /home/pkgeval/.julia/packages/DiffEqBase/p82Yh/src/solve.jl:540 [inlined] #solve#29 at /home/pkgeval/.julia/packages/DiffEqBase/p82Yh/src/solve.jl:530 solve at /home/pkgeval/.julia/packages/DiffEqBase/p82Yh/src/solve.jl:520 unknown function (ip: 0x7ccf0fca6b7e) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #simulate#119 at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/Internals/model/simulate.jl:198 simulate at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/src/Internals/model/simulate.jl:109 unknown function (ip: 0x7ccf0fc9fe2f) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #simulates#1 at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/runtests.jl:70 simulates at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/runtests.jl:44 unknown function (ip: 0x7ccf48c7d4a1) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2994 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3054 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x7ccf5ceb2b02) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 top-level scope at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/internals/runtests.jl:125 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_invoke at /source/src/gf.c:4123 jl_toplevel_eval_flex at /source/src/toplevel.c:731 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_eval_module_expr at /source/src/toplevel.c:248 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:650 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2994 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3054 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x7ccf5ceb2b02) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2994 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3054 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_36779.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_63030.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7ccf5e7fd249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 183589968 (Pool: 183587879; Big: 2089); GC: 134 PkgEval terminated after 2740.56s: test duration exceeded the time limit