Package evaluation to test CrystalNets on Julia 1.14.0-DEV.30 (073666df8b*) started at 2025-11-04T16:52:36.060


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.94s


################################################################################
# Installation
#

Installing CrystalNets...
   Resolving package versions...
   Installed ArnoldiMethod ───────────────────── v0.4.0
   Installed MacroTools ──────────────────────── v0.5.16
   Installed DataStructures ──────────────────── v0.19.2
   Installed PeriodicTable ───────────────────── v1.2.1
   Installed spglib_jll ──────────────────────── v2.6.0+0
   Installed AtomsBase ───────────────────────── v0.5.2
   Installed OrderedCollections ──────────────── v1.8.1
   Installed PeriodicGraphEmbeddings ─────────── v0.3.3
   Installed ProgressMeter ───────────────────── v1.11.0
   Installed Statistics ──────────────────────── v1.11.1
   Installed TextWrap ────────────────────────── v1.0.2
   Installed StaticArrays ────────────────────── v1.9.15
   Installed PrecompileTools ─────────────────── v1.3.3
   Installed PeriodicGraphs ──────────────────── v0.10.4
   Installed StaticArraysCore ────────────────── v1.4.4
   Installed SimpleTraits ────────────────────── v0.9.5
   Installed Requires ────────────────────────── v1.3.1
   Installed JLLWrappers ─────────────────────── v1.7.1
   Installed UnitfulAtomic ───────────────────── v1.0.0
   Installed Preferences ─────────────────────── v1.5.0
   Installed Tokenize ────────────────────────── v0.5.29
   Installed ArgParse ────────────────────────── v1.2.0
   Installed Unitful ─────────────────────────── v1.25.1
   Installed Chemfiles ───────────────────────── v0.10.43
   Installed Inflate ─────────────────────────── v0.1.5
   Installed DocStringExtensions ─────────────── v0.9.5
   Installed Chemfiles_jll ───────────────────── v0.10.4+0
   Installed PeriodicGraphEquilibriumPlacement ─ v0.2.2
   Installed CrystalNets ─────────────────────── v1.1.0
   Installed Graphs ──────────────────────────── v1.13.1
  Installing 3 artifacts
   Installed artifact spglib    267.1 KiB
   Installed artifact Chemfiles 1.6 MiB
   Installed artifact archives  1.4 MiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [7952bbbe] + CrystalNets v1.1.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [c7e460c6] + ArgParse v1.2.0
  [ec485272] + ArnoldiMethod v0.4.0
  [a963bdd2] + AtomsBase v0.5.2
  [46823bd8] + Chemfiles v0.10.43
  [7952bbbe] + CrystalNets v1.1.0
  [864edb3b] + DataStructures v0.19.2
  [ffbed154] + DocStringExtensions v0.9.5
  [86223c79] + Graphs v1.13.1
  [d25df0c9] + Inflate v0.1.5
  [692b3bcd] + JLLWrappers v1.7.1
  [1914dd2f] + MacroTools v0.5.16
  [bac558e1] + OrderedCollections v1.8.1
  [f305370e] + PeriodicGraphEmbeddings v0.3.3
  [72a2d4b8] + PeriodicGraphEquilibriumPlacement v0.2.2
  [18c5b727] + PeriodicGraphs v0.10.4
  [7b2266bf] + PeriodicTable v1.2.1
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [92933f4c] + ProgressMeter v1.11.0
  [ae029012] + Requires v1.3.1
  [699a6c99] + SimpleTraits v0.9.5
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [b718987f] + TextWrap v1.0.2
  [0796e94c] + Tokenize v0.5.29
  [1986cc42] + Unitful v1.25.1
  [a7773ee8] + UnitfulAtomic v1.0.0
  [78a364fa] + Chemfiles_jll v0.10.4+0
  [ac4a9f1e] + spglib_jll v2.6.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.9.9
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.67.1+0
  [3f19e933] + p7zip_jll v17.6.0+0

Installation completed after 8.01s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   5044.0 ms  ✓ TestEnv
  1 dependency successfully precompiled in 5 seconds. 27 already precompiled.
  1 dependency had output during precompilation:
┌ TestEnv
│  WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv.
└  

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   4348.9 ms  ✓ MacroTools
   1109.0 ms  ✓ Statistics
    957.5 ms  ✓ StaticArraysCore
   1171.1 ms  ✓ Requires
   1291.0 ms  ✓ OrderedCollections
   3539.4 ms  ✓ Tokenize
   1144.5 ms  ✓ DocStringExtensions
    999.2 ms  ✓ Inflate
    917.6 ms  ✓ TextWrap
   1777.6 ms  ✓ ProgressMeter
  33032.2 ms  ✓ Unitful
   1107.5 ms  ✓ Preferences
   3260.0 ms  ✓ SimpleTraits
   1457.1 ms  ✓ Statistics → SparseArraysExt
   3474.1 ms  ✓ DataStructures
   1718.6 ms  ✓ ArgParse
   2221.9 ms  ✓ Unitful → PrintfExt
   1137.5 ms  ✓ JLLWrappers
    878.7 ms  ✓ PrecompileTools
   8419.3 ms  ✓ UnitfulAtomic
   5710.0 ms  ✓ PeriodicTable
   1357.1 ms  ✓ Chemfiles_jll
   1360.3 ms  ✓ spglib_jll
  13360.8 ms  ✓ StaticArrays
   1444.9 ms  ✓ StaticArrays → StaticArraysStatisticsExt
   4060.4 ms  ✓ ArnoldiMethod
   6882.2 ms  ✓ AtomsBase
  10019.4 ms  ✓ Graphs
   6956.2 ms  ✓ Chemfiles
  71695.4 ms  ✓ PeriodicGraphs
  75553.3 ms  ✓ PeriodicGraphEmbeddings
  21415.4 ms  ✓ PeriodicGraphEquilibriumPlacement


Precompilation completed after 321.48s


################################################################################
# Testing
#

     Testing CrystalNets
      Status `/tmp/jl_gm3QSJ/Project.toml`
  [861a8166] Combinatorics v1.0.3
  [7952bbbe] CrystalNets v1.1.0
  [86223c79] Graphs v1.13.1
  [18c5b727] PeriodicGraphs v0.10.4
  [90137ffa] StaticArrays v1.9.15
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_gm3QSJ/Manifest.toml`
  [c7e460c6] ArgParse v1.2.0
  [ec485272] ArnoldiMethod v0.4.0
  [a963bdd2] AtomsBase v0.5.2
  [46823bd8] Chemfiles v0.10.43
  [861a8166] Combinatorics v1.0.3
  [7952bbbe] CrystalNets v1.1.0
  [864edb3b] DataStructures v0.19.2
  [ffbed154] DocStringExtensions v0.9.5
  [86223c79] Graphs v1.13.1
  [d25df0c9] Inflate v0.1.5
  [692b3bcd] JLLWrappers v1.7.1
  [1914dd2f] MacroTools v0.5.16
  [bac558e1] OrderedCollections v1.8.1
  [f305370e] PeriodicGraphEmbeddings v0.3.3
  [72a2d4b8] PeriodicGraphEquilibriumPlacement v0.2.2
  [18c5b727] PeriodicGraphs v0.10.4
  [7b2266bf] PeriodicTable v1.2.1
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [92933f4c] ProgressMeter v1.11.0
  [ae029012] Requires v1.3.1
  [699a6c99] SimpleTraits v0.9.5
  [90137ffa] StaticArrays v1.9.15
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [b718987f] TextWrap v1.0.2
  [0796e94c] Tokenize v0.5.29
  [1986cc42] Unitful v1.25.1
  [a7773ee8] UnitfulAtomic v1.0.0
  [78a364fa] Chemfiles_jll v0.10.4+0
  [ac4a9f1e] spglib_jll v2.6.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.16.0+0
  [e37daf67] LibGit2_jll v1.9.1+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.9.9
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.67.1+0
  [3f19e933] p7zip_jll v17.6.0+0
     Testing Running tests...
ERROR: LoadError: ArgumentError: Cannot load (`using/import`) module SHA into module CrystalNets in package CrystalNets
because package CrystalNets does not have SHA in its dependencies:
- Note that the following manifests in the load path were resolved with a potentially
  different DEV version of the current version, which may be the cause of the error.
  Try to re-resolve them in the current version, or consider deleting them if that fails:
    /tmp/jl_gm3QSJ/Manifest.toml
- You may have a partially installed environment. Try `Pkg.instantiate()`
  to ensure all packages in the environment are installed.
- Or, if you have CrystalNets checked out for development and have
  added SHA as a dependency but haven't updated your primary
  environment's manifest file, try `Pkg.resolve()`.
- Otherwise you may need to report an issue with CrystalNets
Stacktrace:
  [1] macro expansion
    @ ./loading.jl:2488 [inlined]
  [2] macro expansion
    @ ./lock.jl:376 [inlined]
  [3] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [4] require
    @ ./loading.jl:2444 [inlined]
  [5] eval_import_path
    @ ./module.jl:36 [inlined]
  [6] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
  [7] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
    @ Base ./module.jl:101
  [8] top-level scope
    @ ~/.julia/packages/CrystalNets/uzTYu/src/types.jl:4
  [9] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [10] top-level scope
    @ ~/.julia/packages/CrystalNets/uzTYu/src/CrystalNets.jl:99
 [11] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2817
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2576
 [14] macro expansion
    @ ./loading.jl:2504 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
 [17] require
    @ ./loading.jl:2444 [inlined]
 [18] eval_import_path
    @ ./module.jl:36 [inlined]
 [19] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [20] _eval_using
    @ ./module.jl:137 [inlined]
 [21] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [22] top-level scope
    @ ~/.julia/packages/CrystalNets/uzTYu/test/runtests.jl:1
 [23] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [24] top-level scope
    @ none:6
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:310
 [27] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/types.jl:4
in expression starting at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/src/CrystalNets.jl:1
in expression starting at /home/pkgeval/.julia/packages/CrystalNets/uzTYu/test/runtests.jl:1

Testing failed after 33.5s

ERROR: LoadError: Package CrystalNets errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 388.96s: package tests unexpectedly errored