Package evaluation to test Clustering on Julia 1.14.0-DEV.30 (073666df8b*) started at 2025-11-04T15:06:27.017 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.85s ################################################################################ # Installation # Installing Clustering... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [aaaa29a8] + Clustering v0.15.8 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [aaaa29a8] + Clustering v0.15.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.2 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [92d709cd] + IrrationalConstants v0.2.6 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.22 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [a2af1166] + SortingAlgorithms v1.2.2 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 1.18s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4102.1 ms ✓ NearestNeighbors 3848.5 ms ✓ Clustering 2 dependencies successfully precompiled in 8 seconds. 28 already precompiled. Precompilation completed after 21.0s ################################################################################ # Testing # Testing Clustering Status `/tmp/jl_OAGCUL/Project.toml` [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [b8a86587] NearestNeighbors v0.4.22 [860ef19b] StableRNGs v1.0.3 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.7 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_OAGCUL/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.2 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [92d709cd] IrrationalConstants v0.2.6 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [b8a86587] NearestNeighbors v0.4.22 [bac558e1] OrderedCollections v1.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [a2af1166] SortingAlgorithms v1.2.2 [860ef19b] StableRNGs v1.0.3 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.7 [3bb67fe8] TranscodingStreams v0.11.3 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 Testing Running tests... Runing tests: * seeding.jl ... Test Summary: | Pass Total Time seeding | 64 64 21.3s * kmeans.jl ... Iters objv objv-change | affected ------------------------------------------------------------- 0 4.433628e-02 1 2.216814e-02 -2.216814e-02 | 0 2 2.216814e-02 0.000000e+00 | 0 K-means converged with 2 iterations (objv = 0.0221681378673404) K-means converged with 2 iterations (objv = 0.7880300424129096) ┌ Warning: The clustering cost increased at iteration #2 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 ┌ Warning: The clustering cost increased at iteration #1 └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/kmeans.jl:191 Test Summary: | Pass Total Time kmeans() (k-means) | 130 130 2m21.6s * kmedoids.jl ... Iters objv objv-change ----------------------------------------------------- 0 1.633511e+00 1 1.633511e+00 0.000000e+00 K-medoids converged with 1 iterations (objv = 1.6335111163381681) K-medoids converged with 1 iterations (objv = 1.1562794866641528) Test Summary: | Pass Total Time kmedoids() (k-medoids) | 42 42 46.7s * affprop.jl ... Iters objv-change | exemplars ----------------------------------------------------- 1 3.2619e+00 | 4 2 1.6309e+00 | 4 3 8.1547e-01 | 4 4 4.0774e-01 | 4 5 2.0387e-01 | 4 6 1.0193e-01 | 4 7 5.0967e-02 | 4 [ Info: Affinity propagation converged with 7 iterations: 4 exemplars. [ Info: Affinity propagation converged with 7 iterations: 4 exemplars. Test Summary: | Pass Total Time affinityprop() (affinity propagation) | 79 79 21.8s * dbscan.jl ... Test Summary: | Pass Total Time dbscan() (DBSCAN clustering) | 60 60 21.6s * fuzzycmeans.jl ... Iters center-change ---------------------------- 1 1.046186e+00 2 2.276536e-01 3 5.496802e-01 4 3.523760e-01 5 2.832790e-02 [ Info: Fuzzy C-means converged with 5 iterations (δ = 0.02832790264794173) [ Info: Fuzzy C-means converged with 4 iterations (δ = 0.04707500588106211) ┌ Warning: Fuzzy C-means terminated without convergence after 100 iterations (δ = 0.0026712249989936233) └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/fuzzycmeans.jl:148 Test Summary: | Pass Total Time fuzzy_cmeans() | 40 40 16.5s * counts.jl ... Test Summary: | Pass Total Time counts() (contingency matrix) | 21 21 1.4s * silhouette.jl ... Test Summary: | Pass Total Time silhouettes() | 25 25 11.8s * clustering_quality.jl ... ┌ Warning: Detected empty cluster(s): #4. clustering_quality() results might be incorrect. └ @ Clustering ~/.julia/packages/Clustering/M6mjF/src/clustering_quality.jl:80 Test Summary: | Pass Total Time clustering_quality() | 38 38 27.5s * varinfo.jl ... Test Summary: | Pass Total Time varinfo() (variational information) | 7 7 0.3s * randindex.jl ... Test Summary: | Pass Total Time randindex() (Rand index) | 15 15 1.2s * hclust.jl ... Test Summary: | Pass Total Time hclust() (hierarchical clustering) | 6668 6668 37.9s * mcl.jl ... [ Info: Starting MCL iterations... ┌ Info: MCL iter. #0: rel.Δ= └ rel_delta = 0.0 [ Info: MCL converged after 0 iteration(s) [ Info: Generating MCL clusters... [ Info: Starting MCL iterations... [ Info: MCL converged after 0 iteration(s) [ Info: Generating MCL clusters... Test Summary: | Pass Broken Total Time MCL | 33 1 34 3m18.2s * vmeasure.jl ... Test Summary: | Pass Total Time V-measure | 9 9 3.1s * mutualinfo.jl ... Test Summary: | Pass Total Time mutualinfo() (mutual information) | 4 4 0.1s * confusion.jl ... Test Summary: | Pass Total Time confusion() (Confusion matrix) | 20 20 0.6s Testing Clustering tests passed Testing completed after 572.51s PkgEval succeeded after 633.31s