Package evaluation to test VariantCallFormat on Julia 1.14.0-DEV.24 (d5fb6bbb43*) started at 2025-11-02T13:51:56.266


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.66s


################################################################################
# Installation
#

Installing VariantCallFormat...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [28eba6e3] + VariantCallFormat v0.5.9
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [67c07d97] + Automa v1.1.0
  [28d598bf] + BGZFStreams v0.3.2
  [47718e42] + BioGenerics v0.1.5
  [e1450e63] + BufferedStreams v1.2.2
  [944b1d66] + CodecZlib v0.7.8
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [fdea26ae] + SIMD v3.7.2
  [3bb67fe8] + TranscodingStreams v0.11.3
  [28eba6e3] + VariantCallFormat v0.5.9
  [ade2ca70] + Dates v1.11.0
  [8f399da3] + Libdl v1.11.0
  [de0858da] + Printf v1.11.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
  [83775a58] + Zlib_jll v1.3.1+2

Installation completed after 1.19s


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# Precompilation
#

Precompiling PkgEval dependencies...

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
  21604.6 ms  ✓ Automa
  18931.5 ms  ✓ VariantCallFormat
  2 dependencies successfully precompiled in 41 seconds. 13 already precompiled.
  1 dependency had output during precompilation:
┌ VariantCallFormat
│  [ Info: Compiling VCF parser...
└  

Precompilation completed after 53.66s


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# Testing
#

     Testing VariantCallFormat
      Status `/tmp/jl_mR2GX6/Project.toml`
  [67c07d97] Automa v1.1.0
  [28d598bf] BGZFStreams v0.3.2
  [47718e42] BioGenerics v0.1.5
  [e1450e63] BufferedStreams v1.2.2
  [bac558e1] OrderedCollections v1.8.1
  [28eba6e3] VariantCallFormat v0.5.9
  [ddb6d928] YAML v0.4.14
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_mR2GX6/Manifest.toml`
  [67c07d97] Automa v1.1.0
  [28d598bf] BGZFStreams v0.3.2
  [47718e42] BioGenerics v0.1.5
  [e1450e63] BufferedStreams v1.2.2
  [944b1d66] CodecZlib v0.7.8
  [692b3bcd] JLLWrappers v1.7.1
  [bac558e1] OrderedCollections v1.8.1
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [fdea26ae] SIMD v3.7.2
  [69024149] StringEncodings v0.3.7
  [3bb67fe8] TranscodingStreams v0.11.3
  [28eba6e3] VariantCallFormat v0.5.9
  [ddb6d928] YAML v0.4.14
  [94ce4f54] Libiconv_jll v1.18.0+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [83775a58] Zlib_jll v1.3.1+2
     Testing Running tests...
Test Summary: | Pass  Total   Time
VCF           |  195    195  42.3s
Test Summary: | Pass  Total   Time
BCF           |   39     39  10.7s
     Testing VariantCallFormat tests passed 

Testing completed after 74.8s

PkgEval succeeded after 149.12s