Package evaluation to test Rfam on Julia 1.14.0-DEV.24 (d5fb6bbb43*) started at 2025-11-02T14:18:19.700


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.87s


################################################################################
# Installation
#

Installing Rfam...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [38c5b72b] + Rfam v3.2.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [692b3bcd] + JLLWrappers v1.7.1
  [21216c6a] + Preferences v1.5.0
  [38c5b72b] + Rfam v3.2.0
  [be1be57a] + Gzip_jll v1.14.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [8f399da3] + Libdl v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [de0858da] + Printf v1.11.0
  [ea8e919c] + SHA v1.0.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.9.9
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850ede] + nghttp2_jll v1.67.1+0

Installation completed after 4.68s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   1495.5 ms  ✓ Rfam
  1 dependency successfully precompiled in 2 seconds. 19 already precompiled.

Precompilation completed after 15.29s


################################################################################
# Testing
#

     Testing Rfam
      Status `/tmp/jl_FF4Sar/Project.toml`
  [4c88cf16] Aqua v0.8.14
  [38c5b72b] Rfam v3.2.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_FF4Sar/Manifest.toml`
  [4c88cf16] Aqua v0.8.14
  [34da2185] Compat v4.18.1
  [692b3bcd] JLLWrappers v1.7.1
  [21216c6a] Preferences v1.5.0
  [38c5b72b] Rfam v3.2.0
  [be1be57a] Gzip_jll v1.14.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.16.0+0
  [e37daf67] LibGit2_jll v1.9.1+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.9.9
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850ede] nghttp2_jll v1.67.1+0
  [3f19e933] p7zip_jll v17.6.0+0
     Testing Running tests...
[ Info: RFAM Directory /tmp/jl_9qEaL0 set.
[ Info: Rfam version 14.7 set.
Test Summary:                                | Pass  Total   Time
aqua                                         |   11     11  39.3s
  Method ambiguity                           |    1      1   6.5s
  Unbound type parameters                    |    1      1   0.1s
  Undefined exports                          |    1      1   0.0s
  Compare Project.toml and test/Project.toml |    1      1   0.4s
  Stale dependencies                         |    1      1   3.8s
  Compat bounds                              |    4      4   0.7s
  Piracy                                     |    1      1   0.2s
  Persistent tasks                           |    1      1  14.5s
[ Info: Downloading RF00162 to /tmp/jl_9qEaL0/14.7/fasta_files/RF00162.fa ...
[ Info: Downloading Rfam.cm to /tmp/jl_9qEaL0/14.7/Rfam.cm ...
[ Info: Downloading Rfam.seed to /tmp/jl_9qEaL0/14.7/Rfam.seed ...
[ Info: Downloading Rfam.seed_tree.tar.gz to /tmp/jl_9qEaL0/14.7/Rfam.seed_tree ...
     Testing Rfam tests passed 

Testing completed after 60.27s

PkgEval succeeded after 120.64s