Package evaluation to test PhyloClustering on Julia 1.14.0-DEV.14 (ec5cf08762*) started at 2025-11-03T03:02:27.693 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.7s ################################################################################ # Installation # Installing PhyloClustering... Resolving package versions... Installed Libuuid_jll ───────────────── v2.41.2+0 Installed libass_jll ────────────────── v0.17.4+0 Installed libaom_jll ────────────────── v3.13.1+0 Installed ImageIO ───────────────────── v0.6.9 Installed Formatting ────────────────── v0.4.3 Installed MosaicViews ───────────────── v0.3.4 Installed PolygonOps ────────────────── v0.1.2 Installed MultivariateStats ─────────── v0.10.3 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed InlineStrings ─────────────── v1.4.5 Installed Extents ───────────────────── v0.1.6 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed NearestNeighbors ──────────── v0.4.22 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed OrderedCollections ────────── v1.8.1 Installed Functors ──────────────────── v0.4.12 Installed UnsafeArrays ──────────────── v1.0.8 Installed SentinelArrays ────────────── v1.4.8 Installed Optim ─────────────────────── v1.13.2 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed Giflib_jll ────────────────── v5.2.3+0 Installed AbstractLattices ──────────── v0.3.1 Installed Distances ─────────────────── v0.10.12 Installed FileIO ────────────────────── v1.17.1 Installed NaNMath ───────────────────── v1.1.3 Installed QuadGK ────────────────────── v2.11.2 Installed Graphics ──────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Opus_jll ──────────────────── v1.5.2+0 Installed WoodburyMatrices ──────────── v1.0.0 Installed ScopedValues ──────────────── v1.5.0 Installed Tables ────────────────────── v1.12.1 Installed Arpack ────────────────────── v0.5.4 Installed SimplePolynomials ─────────── v0.2.18 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed Ogg_jll ───────────────────── v1.3.6+0 Installed EnumX ─────────────────────── v1.0.5 Installed Reexport ──────────────────── v1.2.2 Installed NLSolversBase ─────────────── v7.10.0 Installed LZO_jll ───────────────────── v2.10.3+0 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Missings ──────────────────── v1.2.0 Installed Preferences ───────────────── v1.5.0 Installed TableTraits ───────────────── v1.0.1 Installed Polynomials ───────────────── v4.0.21 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed Imath_jll ─────────────────── v3.1.11+0 Installed MappedArrays ──────────────── v0.4.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed Crayons ───────────────────── v4.1.1 Installed Grisu ─────────────────────── v1.0.2 Installed RangeArrays ───────────────── v0.3.2 Installed UnPack ────────────────────── v1.0.2 Installed Format ────────────────────── v1.3.7 Installed CRlibm ────────────────────── v1.0.2 Installed ADTypes ───────────────────── v1.18.0 Installed Inflate ───────────────────── v0.1.5 Installed DiffResults ───────────────── v1.1.0 Installed ColorBrewer ───────────────── v0.4.2 Installed FillArrays ────────────────── v1.14.0 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.18.22 Installed MathTeXEngine ─────────────── v0.5.7 Installed Packing ───────────────────── v0.5.1 Installed OpenEXR_jll ───────────────── v3.2.4+0 Installed AbstractTrees ─────────────── v0.4.5 Installed LazyModules ───────────────── v0.3.1 Installed ParallelKMeans ────────────── v1.1.0 Installed DelimitedFiles ────────────── v1.9.1 Installed MakieCore ─────────────────── v0.7.3 Installed oneTBB_jll ────────────────── v2022.0.0+1 Installed x264_jll ──────────────────── v10164.0.1+0 Installed Cairo ─────────────────────── v1.1.1 Installed UnicodeFun ────────────────── v0.4.1 Installed StatsBase ─────────────────── v0.33.21 Installed CodecZlib ─────────────────── v0.7.8 Installed Observables ───────────────── v0.5.5 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed CairoMakie ────────────────── v0.11.9 Installed DataValueInterfaces ───────── v1.0.0 Installed ArrayInterface ────────────── v7.22.0 Installed CEnum ─────────────────────── v0.5.0 Installed CommonSubexpressions ──────── v0.3.1 Installed Libffi_jll ────────────────── v3.4.7+0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed IrrationalConstants ───────── v0.2.6 Installed StructUtils ───────────────── v2.5.1 Installed Clustering ────────────────── v0.15.8 Installed IntegerMathUtils ──────────── v0.1.3 Installed Contour ───────────────────── v0.6.3 Installed isoband_jll ───────────────── v0.2.3+0 Installed libpng_jll ────────────────── v1.6.50+0 Installed RoundingEmulator ──────────── v0.2.1 Installed SimpleTraits ──────────────── v0.9.5 Installed ImageMetadata ─────────────── v0.9.10 Installed libfdk_aac_jll ────────────── v2.0.4+0 Installed StableRNGs ────────────────── v1.0.3 Installed ColorVectorSpace ──────────── v0.10.0 Installed libsixel_jll ──────────────── v1.10.5+0 Installed Interpolations ────────────── v0.16.2 Installed libwebp_jll ───────────────── v1.6.0+0 Installed PikaParser ────────────────── v0.6.1 Installed Scratch ───────────────────── v1.3.0 Installed FASTX ─────────────────────── v2.1.7 Installed FFMPEG_jll ────────────────── v8.0.0+0 Installed Setfield ──────────────────── v1.1.2 Installed ShaderAbstractions ────────── v0.4.1 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed PooledArrays ──────────────── v1.4.3 Installed WeakKeyIdDicts ────────────── v0.1.0 Installed PDMats ────────────────────── v0.11.35 Installed ImageCore ─────────────────── v0.10.5 Installed WorkerUtilities ───────────── v1.6.1 Installed AxisArrays ────────────────── v0.4.8 Installed BioSequences ──────────────── v3.5.0 Installed DocStringExtensions ───────── v0.9.5 Installed PNGFiles ──────────────────── v0.4.4 Installed JpegTurbo ─────────────────── v0.1.6 Installed ForwardDiff ───────────────── v1.2.2 Installed StableHashTraits ──────────── v1.3.4 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed Multisets ─────────────────── v0.4.5 Installed FreeType ──────────────────── v4.1.1 Installed DifferentiationInterface ──── v0.7.10 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0 Installed LightXML ──────────────────── v0.9.3 Installed PkgVersion ────────────────── v0.3.3 Installed StackViews ────────────────── v0.1.2 Installed RelocatableFolders ────────── v1.0.1 Installed StringViews ───────────────── v1.3.5 Installed StatsModels ───────────────── v0.7.7 Installed KernelDensity ─────────────── v0.6.10 Installed AliasTables ───────────────── v1.1.3 Installed HashArrayMappedTries ──────── v0.2.0 Installed ShiftedArrays ─────────────── v2.0.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Combinatorics ─────────────── v1.0.3 Installed SIMD ──────────────────────── v3.7.2 Installed RecipesBase ───────────────── v1.3.4 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed Netpbm ────────────────────── v1.1.1 Installed Twiddle ───────────────────── v1.1.2 Installed GaussianMixtures ──────────── v0.3.13 Installed ImageAxes ─────────────────── v0.6.12 Installed Colors ────────────────────── v0.12.11 Installed StaticArrays ──────────────── v1.9.15 Installed StaticArraysCore ──────────── v1.4.4 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed Mods ──────────────────────── v2.2.6 Installed AbstractFFTs ──────────────── v1.5.0 Installed ColorTypes ────────────────── v0.11.5 Installed AxisAlgorithms ────────────── v1.1.0 Installed QOI ───────────────────────── v1.0.1 Installed StringManipulation ────────── v0.4.1 Installed Requires ──────────────────── v1.3.1 Installed Glib_jll ──────────────────── v2.86.0+0 Installed BaseDirs ──────────────────── v1.3.2 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed SimplePartitions ──────────── v0.3.3 Installed FreeTypeAbstraction ───────── v0.10.8 Installed CSV ───────────────────────── v0.10.15 Installed JSON ──────────────────────── v1.2.0 Installed Parsers ───────────────────── v2.8.3 Installed PrettyTables ──────────────── v3.1.0 Installed Arpack_jll ────────────────── v3.5.1+1 Installed FiniteDiff ────────────────── v2.29.0 Installed Distributions ─────────────── v0.25.122 Installed Rmath ─────────────────────── v0.9.0 Installed BioGenerics ───────────────── v0.1.5 Installed ColorSchemes ──────────────── v3.31.0 Installed GeoFormatTypes ────────────── v0.4.4 Installed FilePaths ─────────────────── v0.8.3 Installed PhyloNetworks ─────────────── v0.16.4 Installed StatsFuns ─────────────────── v1.5.2 Installed PhyloClustering ───────────── v0.2.0 Installed OpenEXR ───────────────────── v0.3.3 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed WeakRefStrings ────────────── v1.4.2 Installed SignedDistanceFields ──────── v0.4.0 Installed JLLWrappers ───────────────── v1.7.1 Installed GridLayoutBase ────────────── v0.10.2 Installed DataFrames ────────────────── v1.8.1 Installed XZ_jll ────────────────────── v5.8.1+0 Installed x265_jll ──────────────────── v4.1.0+0 Installed Primes ────────────────────── v0.5.7 Installed ExactPredicates ───────────── v2.2.9 Installed GeometryBasics ────────────── v0.4.11 Installed StructTypes ───────────────── v1.11.0 Installed Pango_jll ─────────────────── v1.56.4+0 Installed NLopt ─────────────────────── v1.2.1 Installed StatisticalTraits ─────────── v3.5.0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed IterTools ─────────────────── v1.10.0 Installed FilePathsBase ─────────────── v0.9.24 Installed TiffImages ────────────────── v0.11.6 Installed GLM ───────────────────────── v1.9.0 Installed JpegTurbo_jll ─────────────── v3.1.3+0 Installed PaddedViews ───────────────── v0.5.12 Installed JLD2 ──────────────────────── v0.5.15 Installed Adapt ─────────────────────── v4.4.0 Installed Libmount_jll ──────────────── v2.41.2+0 Installed HypergeometricFunctions ───── v0.3.28 Installed ConstructionBase ──────────── v1.6.0 Installed TriplotBase ───────────────── v0.1.0 Installed Compat ────────────────────── v4.18.1 Installed Sixel ─────────────────────── v0.1.5 Installed TranscodingStreams ────────── v0.11.3 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed LinearAlgebraX ────────────── v0.2.10 Installed RingLists ─────────────────── v0.2.9 Installed PlotUtils ─────────────────── v1.4.3 Installed EarCut_jll ────────────────── v2.2.4+0 Installed TensorCore ────────────────── v0.1.1 Installed PositiveFactorizations ────── v0.2.4 Installed Statistics ────────────────── v1.11.1 Installed DelaunayTriangulation ─────── v0.8.12 Installed ImageBase ─────────────────── v0.1.7 Installed StatsAPI ──────────────────── v1.7.1 Installed PrecompileTools ───────────── v1.3.3 Installed StructArrays ──────────────── v0.6.21 Installed OffsetArrays ──────────────── v1.17.0 Installed ProgressMeter ─────────────── v1.11.0 Installed WebP ──────────────────────── v0.1.3 Installed TupleTools ────────────────── v1.6.0 Installed BioSymbols ────────────────── v5.2.0 Installed ChainRulesCore ────────────── v1.26.0 Installed Ratios ────────────────────── v0.4.5 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed LAME_jll ──────────────────── v3.100.3+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed Isoband ───────────────────── v0.1.1 Installed Animations ────────────────── v0.4.2 Installed libvorbis_jll ─────────────── v1.3.8+0 Installed Parameters ────────────────── v0.12.3 Installed ScikitLearnBase ───────────── v0.5.0 Installed PtrArrays ─────────────────── v1.3.0 Installed IntervalArithmetic ────────── v1.0.1 Installed XML2_jll ──────────────────── v2.15.1+0 Installed IntervalSets ──────────────── v0.7.11 Installed FixedPointNumbers ─────────── v0.8.5 Installed ScientificTypesBase ───────── v3.0.0 Installed SpecialFunctions ──────────── v2.6.1 Installed Showoff ───────────────────── v1.0.3 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed FFTW ──────────────────────── v1.10.0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed Permutations ──────────────── v0.4.23 Installed LineSearches ──────────────── v7.4.0 Installed Automa ────────────────────── v1.1.0 Installed IndirectArrays ────────────── v1.0.0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed GeoInterface ──────────────── v1.4.1 Installed SimpleRandom ──────────────── v0.3.2 Installed MLJModelInterface ─────────── v1.12.0 Installed Makie ─────────────────────── v0.20.8 Installed SimpleGraphs ──────────────── v0.8.7 Installing 56 artifacts Installed artifact EarCut 80.5 KiB Installed artifact libvorbis 271.0 KiB Installed artifact libsixel 177.3 KiB Installed artifact LZO 208.9 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Giflib 154.6 KiB Installed artifact Cairo 2.2 MiB Installed artifact NLopt 322.7 KiB Installed artifact libwebp 2.6 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact XZ 1.5 MiB Installed artifact Imath 182.8 KiB Installed artifact XML2 2.2 MiB Installed artifact libass 427.8 KiB Installed artifact LERC 272.9 KiB Installed artifact Ogg 250.3 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Glib 7.7 MiB Installed artifact Expat 283.3 KiB Installed artifact libaom 6.4 MiB Installed artifact CRlibm 169.5 KiB Installed artifact Libiconv 1.9 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact FFMPEG 11.7 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact FriBidi 78.9 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Libuuid 3.7 MiB Installed artifact isoband 25.7 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact Libmount 6.5 MiB Installed artifact Bzip2 503.5 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact x265 1.4 MiB Installed artifact LAME 292.5 KiB Installed artifact Pixman 372.2 KiB Installed artifact OpenEXR 1.9 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Libffi 44.2 KiB Installed artifact Libtiff 2.3 MiB Installed artifact libpng 328.4 KiB Installed artifact Rmath 121.9 KiB Installed artifact FFTW 2.2 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Arpack 147.2 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Installed artifact x264 2.1 MiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Opus 925.5 KiB Installed artifact Pango 1.1 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact FreeType2 1.5 MiB Installed artifact Xorg_libX11 13.9 MiB Updating `~/.julia/environments/v1.14/Project.toml` [2e4ec7c6] + PhyloClustering v0.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [621f4979] + AbstractFFTs v1.5.0 [398f06c4] + AbstractLattices v0.3.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.3.2 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 ⌅ [13f3f980] + CairoMakie v0.11.9 [d360d2e6] + ChainRulesCore v1.26.0 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [927a84f5] + DelaunayTriangulation v0.8.12 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.10 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.9 [411431e0] + Extents v0.1.6 [c2308a5c] + FASTX v2.1.7 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.1 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [59287772] + Formatting v0.4.3 [f6369f11] + ForwardDiff v1.2.2 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 ⌅ [d9f16b24] + Functors v0.4.12 [38e38edf] + GLM v1.9.0 [cc18c42c] + GaussianMixtures v0.3.13 [68eda718] + GeoFormatTypes v0.4.4 ⌃ [cf35fbd7] + GeoInterface v1.4.1 ⌅ [5c1252a2] + GeometryBasics v0.4.11 [a2bd30eb] + Graphics v1.1.3 ⌅ [3955a311] + GridLayoutBase v0.10.2 [42e2da0e] + Grisu v1.0.2 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [18e54dd8] + IntegerMathUtils v0.1.3 [a98d9a8b] + Interpolations v0.16.2 [d1acc4aa] + IntervalArithmetic v1.0.1 [8197267c] + IntervalSets v0.7.11 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.2.0 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.10 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.3 [d3d80556] + LineSearches v7.4.0 [9b3f67b0] + LinearAlgebraX v0.2.10 [2ab3a3ac] + LogExpFunctions v0.3.29 [e80e1ace] + MLJModelInterface v1.12.0 [1914dd2f] + MacroTools v0.5.16 ⌅ [ee78f7c6] + Makie v0.20.8 ⌅ [20f20a25] + MakieCore v0.7.3 [dbb5928d] + MappedArrays v0.4.2 ⌅ [0a4f8689] + MathTeXEngine v0.5.7 [e1d29d7a] + Missings v1.2.0 [7475f97c] + Mods v2.2.6 [e94cdb99] + MosaicViews v0.3.4 [3b2b4ff1] + Multisets v0.4.5 [6f286f6a] + MultivariateStats v0.10.3 [d41bc354] + NLSolversBase v7.10.0 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [f09324ee] + Netpbm v1.1.1 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [f57f5aa1] + PNGFiles v0.4.4 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [42b8e9d4] + ParallelKMeans v1.1.0 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [2ae35dd2] + Permutations v0.4.23 [2e4ec7c6] + PhyloClustering v0.2.0 ⌅ [33ad39ac] + PhyloNetworks v0.16.4 [3bbf5609] + PikaParser v0.6.1 [eebad327] + PkgVersion v0.3.3 [995b91a9] + PlotUtils v1.4.3 [647866c9] + PolygonOps v0.1.2 ⌃ [f27b6e38] + Polynomials v4.0.21 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + 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[64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.5 ⌅ [09ab397b] + StructArrays v0.6.21 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.5.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.6 [3bb67fe8] + TranscodingStreams v0.11.3 [981d1d27] + TriplotBase v0.1.0 [9d95972d] + TupleTools v1.6.0 [7200193e] + Twiddle v1.1.2 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [c4a57d5a] + UnsafeArrays v1.0.8 [ecbed89c] + WeakKeyIdDicts v0.1.0 [ea10d353] + WeakRefStrings v1.4.2 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [68821587] + Arpack_jll v3.5.1+1 [6e34b625] + Bzip2_jll v1.0.9+0 [4e9b3aee] + CRlibm_jll v1.0.1+0 [83423d85] + Cairo_jll v1.18.5+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.7.3+0 [b22a6f82] + FFMPEG_jll v8.0.0+0 [f5851436] + FFTW_jll v3.3.11+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [59f7168a] + Giflib_jll v5.2.3+0 [7746bdde] + Glib_jll v2.86.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [905a6f67] + Imath_jll v3.1.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [856f044c] + MKL_jll v2025.2.0+0 [079eb43e] + NLopt_jll v2.10.0+0 [e7412a2a] + Ogg_jll v1.3.6+0 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.2.4+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.5.2+0 [36c8627f] + Pango_jll v1.56.4+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [02c8fc9c] + XML2_jll v2.15.1+0 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [9a68df92] + isoband_jll v0.2.3+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [b53b4c65] + libpng_jll v1.6.50+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [8bf52ea8] + CRC32c v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 27.11s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4236.6 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 3878.9 ms ✓ MacroTools 1535.8 ms ✓ InlineStrings 746.3 ms ✓ Reexport 909.6 ms ✓ MappedArrays 852.6 ms ✓ TensorCore 1090.5 ms ✓ ConstructionBase 1065.0 ms ✓ Mods 2038.3 ms ✓ IrrationalConstants 735.4 ms ✓ DataValueInterfaces 804.4 ms ✓ StatsAPI 2078.5 ms ✓ Format 992.3 ms ✓ Observables 798.7 ms ✓ Twiddle 877.8 ms ✓ RoundingEmulator 794.5 ms ✓ PolygonOps 1134.3 ms ✓ IterTools 1002.7 ms ✓ IntervalSets 819.9 ms ✓ CEnum 1437.1 ms ✓ Functors 2019.4 ms ✓ Combinatorics 1033.2 ms ✓ StringViews 1013.8 ms ✓ RingLists 917.2 ms ✓ Inflate 807.8 ms ✓ Contour 840.7 ms ✓ TupleTools 1058.5 ms ✓ TranscodingStreams 624.4 ms ✓ LaTeXStrings 824.2 ms ✓ Statistics 706.2 ms ✓ StaticArraysCore 668.9 ms ✓ WeakKeyIdDicts 671.7 ms ✓ StableRNGs 565.1 ms ✓ AbstractLattices 672.1 ms ✓ GeoFormatTypes 632.2 ms ✓ PtrArrays 921.9 ms ✓ Grisu 710.2 ms ✓ PositiveFactorizations 636.5 ms ✓ DataAPI 610.5 ms ✓ InvertedIndices 957.6 ms ✓ Multisets 936.7 ms ✓ LazyModules 812.2 ms ✓ ShiftedArrays 1041.2 ms ✓ AbstractTrees 999.4 ms ✓ AbstractFFTs 820.7 ms ✓ EnumX 964.0 ms ✓ WorkerUtilities 2134.9 ms ✓ FillArrays 801.6 ms ✓ IntegerMathUtils 800.2 ms ✓ ScientificTypesBase 2754.5 ms ✓ TriplotBase 929.6 ms ✓ IndirectArrays 983.0 ms ✓ UnPack 1051.7 ms ✓ Extents 792.7 ms ✓ RangeArrays 1230.2 ms ✓ OrderedCollections 1275.8 ms ✓ HashArrayMappedTries 1525.3 ms ✓ ADTypes 1460.2 ms ✓ DocStringExtensions 1307.4 ms ✓ UnsafeArrays 4187.1 ms ✓ BaseDirs 1581.8 ms ✓ OffsetArrays 731.3 ms ✓ IteratorInterfaceExtensions 1744.2 ms ✓ Crayons 933.2 ms ✓ DelimitedFiles 1065.3 ms ✓ Formatting 925.6 ms ✓ NaNMath 1182.9 ms ✓ Requires 1213.8 ms ✓ SuiteSparse 1327.3 ms ✓ WoodburyMatrices 863.5 ms ✓ Scratch 2632.6 ms ✓ SentinelArrays 1485.4 ms ✓ StructTypes 1384.1 ms ✓ StructUtils 1665.6 ms ✓ ProgressMeter 3524.8 ms ✓ UnicodeFun 1096.0 ms ✓ Compat 1069.6 ms ✓ Preferences 4377.9 ms ✓ PkgVersion 1729.6 ms ✓ CommonSubexpressions 3305.3 ms ✓ SimpleTraits 910.5 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 2868.1 ms ✓ MakieCore 726.3 ms ✓ IntervalSets → IntervalSetsRandomExt 708.6 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1032.3 ms ✓ Permutations 884.2 ms ✓ BioGenerics 908.4 ms ✓ CodecZlib 760.4 ms ✓ SignedDistanceFields 1283.7 ms ✓ Statistics → SparseArraysExt 3661.2 ms ✓ FixedPointNumbers 929.0 ms ✓ ScikitLearnBase 1435.2 ms ✓ Distances 735.2 ms ✓ IntervalSets → IntervalSetsStatisticsExt 847.6 ms ✓ DiffResults 919.5 ms ✓ AliasTables 843.2 ms ✓ Showoff 938.0 ms ✓ Missings 957.0 ms ✓ PooledArrays 3569.9 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1482.6 ms ✓ FillArrays → FillArraysSparseArraysExt 889.9 ms ✓ FillArrays → FillArraysStatisticsExt 1033.7 ms ✓ Primes 697.6 ms ✓ StatisticalTraits 1910.6 ms ✓ GeoInterface 854.6 ms ✓ Parameters 828.0 ms ✓ ScopedValues 743.9 ms ✓ ADTypes → ADTypesConstructionBaseExt 1724.0 ms ✓ DifferentiationInterface 1350.5 ms ✓ LogExpFunctions 1431.4 ms ✓ PikaParser 885.3 ms ✓ PaddedViews 824.9 ms ✓ StackViews 719.3 ms ✓ TableTraits 816.5 ms ✓ Ratios 895.3 ms ✓ Adapt 9018.4 ms ✓ FileIO 1749.4 ms ✓ PDMats 1325.3 ms ✓ AxisAlgorithms 1058.9 ms ✓ RelocatableFolders 794.5 ms ✓ Compat → CompatLinearAlgebraExt 868.3 ms ✓ PrecompileTools 1076.5 ms ✓ JLLWrappers 2787.5 ms ✓ Setfield 1493.8 ms ✓ AxisArrays 4739.4 ms ✓ ColorTypes 1251.8 ms ✓ Distances → DistancesSparseArraysExt 3212.4 ms ✓ MLJModelInterface 1477.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1134.2 ms ✓ MosaicViews 2035.5 ms ✓ Tables 1028.7 ms ✓ Ratios → RatiosFixedPointNumbersExt 1271.4 ms ✓ ArrayInterface 1370.8 ms ✓ Adapt → AdaptSparseArraysExt 775.2 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1359.4 ms ✓ FillArrays → FillArraysPDMatsExt 2518.8 ms ✓ ChainRulesCore 1994.4 ms ✓ FilePathsBase 3784.2 ms ✓ DataStructures 2450.9 ms ✓ BioSymbols 3035.4 ms ✓ StringManipulation 1 dependency had output during precompilation: ┌ Formatting │ ┌ Warning: DEPRECATION NOTICE │ │ │ │ Formatting.jl has been unmaintained for a while, with some serious │ │ correctness bugs compromising the original purpose of the package. As a result, │ │ it has been deprecated - consider using an alternative, such as │ │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly. │ │ │ │ If you are not using Formatting.jl as a direct dependency, please consider │ │ opening an issue on any packages you are using that do use it as a dependency. │ │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which │ │ package originally brings it in as a dependency. │ └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12 └ Precompilation completed after 221.24s ################################################################################ # Testing # Testing PhyloClustering Status `/tmp/jl_h3bORO/Project.toml` ⌅ [13f3f980] CairoMakie v0.11.9 [aaaa29a8] Clustering v0.15.8 [861a8166] Combinatorics v1.0.3 [b4f34e82] Distances v0.10.12 [59287772] Formatting v0.4.3 [cc18c42c] GaussianMixtures v0.3.13 [6f286f6a] MultivariateStats v0.10.3 [42b8e9d4] ParallelKMeans v1.1.0 [2e4ec7c6] PhyloClustering v0.2.0 ⌅ [33ad39ac] PhyloNetworks v0.16.4 [295af30f] Revise v3.12.0 [860ef19b] StableRNGs v1.0.3 ⌅ [2913bbd2] StatsBase v0.33.21 [fd094767] Suppressor v0.2.8 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_h3bORO/Manifest.toml` [47edcb42] ADTypes v1.18.0 [621f4979] AbstractFFTs v1.5.0 [398f06c4] AbstractLattices v0.3.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.22.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols v5.2.0 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 ⌅ [13f3f980] CairoMakie v0.11.9 [d360d2e6] ChainRulesCore v1.26.0 [aaaa29a8] Clustering v0.15.8 [da1fd8a2] CodeTracking v2.0.1 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [927a84f5] DelaunayTriangulation v0.8.12 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.10 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.9 [411431e0] Extents v0.1.6 [c2308a5c] FASTX v2.1.7 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.17.1 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase 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v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: UndefVarError: `T` not defined in `SIMD` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/SIMD/UiGbs/src/arrayops.jl:4 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [3] top-level scope @ ~/.julia/packages/SIMD/UiGbs/src/SIMD.jl:25 [4] include(mod::Module, _path::String) @ Base ./Base.jl:309 [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [7] macro expansion @ ./loading.jl:2504 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [10] require @ ./loading.jl:2444 [inlined] [11] eval_import_path @ ./module.jl:36 [inlined] [12] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [13] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [14] top-level scope @ ~/.julia/packages/Automa/EyNRt/src/Automa.jl:4 [15] include(mod::Module, _path::String) @ Base ./Base.jl:309 [16] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [17] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [18] macro expansion @ ./loading.jl:2504 [inlined] [19] macro expansion @ ./lock.jl:376 [inlined] [20] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [21] require @ ./loading.jl:2444 [inlined] [22] eval_import_path @ ./module.jl:36 [inlined] [23] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [24] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [25] top-level scope @ ~/.julia/packages/FASTX/KGKFv/src/FASTX.jl:4 [26] include(mod::Module, _path::String) @ Base ./Base.jl:309 [27] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [28] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [29] macro expansion @ ./loading.jl:2504 [inlined] [30] macro expansion @ ./lock.jl:376 [inlined] [31] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [32] require @ ./loading.jl:2444 [inlined] [33] eval_import_path @ ./module.jl:36 [inlined] [34] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [35] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [36] top-level scope @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:25 [37] include(mod::Module, _path::String) @ Base ./Base.jl:309 [38] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [39] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [40] macro expansion @ ./loading.jl:2504 [inlined] [41] macro expansion @ ./lock.jl:376 [inlined] [42] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [43] require @ ./loading.jl:2444 [inlined] [44] eval_import_path @ ./module.jl:36 [inlined] [45] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [46] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [47] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1 [48] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [49] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:4 [50] include(mod::Module, _path::String) @ Base ./Base.jl:309 [51] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [52] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [53] macro expansion @ ./loading.jl:2504 [inlined] [54] macro expansion @ ./lock.jl:376 [inlined] [55] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [56] require @ ./loading.jl:2444 [inlined] [57] eval_import_path @ ./module.jl:36 [inlined] [58] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [59] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [60] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/test/runtests.jl:1 [61] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [62] top-level scope @ none:6 [63] eval(m::Module, e::Any) @ Core ./boot.jl:489 [64] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [65] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/arrayops.jl:4 in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/SIMD.jl:1 in expression starting at /home/pkgeval/.julia/packages/Automa/EyNRt/src/Automa.jl:1 in expression starting at /home/pkgeval/.julia/packages/FASTX/KGKFv/src/FASTX.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/test/runtests.jl:1 Testing failed after 393.69s ERROR: LoadError: Package PhyloClustering errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2936 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2785 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 677.28s: package tests unexpectedly errored