Package evaluation to test MolecularGraphKernels on Julia 1.14.0-DEV.24 (d5fb6bbb43*) started at 2025-11-02T21:21:33.531 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.95s ################################################################################ # Installation # Installing MolecularGraphKernels... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [bf3818bd] + MolecularGraphKernels v0.11.0 Updating `~/.julia/environments/v1.14/Manifest.toml` ⌅ [ec485272] + ArnoldiMethod v0.2.0 [159f3aea] + Cairo v1.1.1 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.18.1 [a81c6b42] + Compose v0.9.6 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [5789e2e9] + FileIO v1.17.1 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [a2cc645c] + GraphPlot v0.5.2 [a2bd30eb] + Graphics v1.1.3 ⌃ [86223c79] + Graphs v1.9.0 [d25df0c9] + Inflate v0.1.5 [c8e1da08] + IterTools v1.10.0 ⌅ [033835bb] + JLD2 v0.4.55 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [fc18253b] + LazyJSON v0.2.2 [1914dd2f] + MacroTools v0.5.16 [442fdcdd] + Measures v0.3.2 [6fafb56a] + Memoization v0.2.2 ⌅ [626554b9] + MetaGraphs v0.7.2 [e1d29d7a] + Missings v1.2.0 ⌅ [6c89ec66] + MolecularGraph v0.13.0 [bf3818bd] + MolecularGraphKernels v0.11.0 [77ba4419] + NaNMath v1.1.3 [4d1e1d77] + Nullables v1.0.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [91cefc8d] + PrecompileSignatures v3.0.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 ⌅ [f8a19df8] + PropertyDicts v0.1.2 [44044271] + RDKitMinimalLib v1.2.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.25.1 [cbff2730] + Unmarshal v0.4.4 [ddb6d928] + YAML v0.4.14 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [2e619515] + Expat_jll v2.7.3+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [7746bdde] + Glib_jll v2.86.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [e9f186c6] + Libffi_jll v3.4.7+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [36c8627f] + Pango_jll v1.56.4+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [03d1d220] + RDKit_jll v2022.9.5+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 ⌅ [28df3c45] + boost_jll v1.76.0+1 [f6050b86] + coordgenlibs_jll v3.0.2+0 [172afb32] + libinchi_jll v1.6.0+0 [b53b4c65] + libpng_jll v1.6.50+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.0s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 42362.6 ms ✓ JLD2 1301.8 ms ✓ RDKit_jll 9832.9 ms ✓ Graphs 1251.0 ms ✓ Unmarshal 5510.7 ms ✓ Compose 1233.5 ms ✓ RDKitMinimalLib 8649.9 ms ✓ MetaGraphs 16268.2 ms ✓ MolecularGraph 4830.7 ms ✓ GraphPlot 18009.8 ms ✓ MolecularGraphKernels 10 dependencies successfully precompiled in 110 seconds. 109 already precompiled. 2 dependencies had output during precompilation: ┌ MolecularGraphKernels │ WARNING: Constructor for type "MetaGraph" was extended in `MolecularGraphKernels` without explicit qualification or import. │ NOTE: Assumed "MetaGraph" refers to `MetaGraphs.MetaGraph`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function MetaGraph end`. │ Hint: To silence the warning, qualify `MetaGraph` as `MetaGraphs.MetaGraph` in the method signature or explicitly `import MetaGraphs: MetaGraph`. │ WARNING: Constructor for type "SimpleGraph" was extended in `MolecularGraphKernels` without explicit qualification or import. │ NOTE: Assumed "SimpleGraph" refers to `Graphs.SimpleGraph`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function SimpleGraph end`. │ Hint: To silence the warning, qualify `SimpleGraph` as `Graphs.SimpleGraph` in the method signature or explicitly `import Graphs: SimpleGraph`. └ ┌ Unmarshal │ WARNING: method definition for unmarshal at /home/pkgeval/.julia/packages/Unmarshal/2eEFB/src/Unmarshal.jl:67 declares type variable N but does not use it. └ Precompilation completed after 122.39s ################################################################################ # Testing # Testing MolecularGraphKernels Status `/tmp/jl_Z2Cuac/Project.toml` [4c88cf16] Aqua v0.8.14 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.3 ⌃ [a2441757] Coverage v1.6.1 ⌃ [e30172f5] Documenter v0.25.2 ⌃ [86223c79] Graphs v1.9.0 [b5f81e59] IOCapture v1.0.0 ⌅ [626554b9] MetaGraphs v0.7.2 ⌅ [6c89ec66] MolecularGraph v0.13.0 [bf3818bd] MolecularGraphKernels v0.11.0 [44044271] RDKitMinimalLib v1.2.0 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Z2Cuac/Manifest.toml` [4c88cf16] Aqua v0.8.14 ⌅ [ec485272] ArnoldiMethod v0.2.0 [d1d4a3ce] BitFlags v0.1.9 [159f3aea] Cairo v1.1.1 [944b1d66] CodecZlib v0.7.8 ⌅ [3da002f7] ColorTypes v0.11.5 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.3 [34da2185] Compat v4.18.1 [a81c6b42] Compose v0.9.6 [f0e56b4a] ConcurrentUtilities v2.5.0 ⌃ [a2441757] Coverage v1.6.1 [c36e975a] CoverageTools v1.3.2 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 ⌅ [ffbed154] DocStringExtensions v0.8.6 ⌃ [e30172f5] Documenter v0.25.2 [460bff9d] ExceptionUnwrapping v0.1.11 [5789e2e9] FileIO v1.17.1 [53c48c17] FixedPointNumbers v0.8.5 ⌅ [a2cc645c] GraphPlot v0.5.2 [a2bd30eb] Graphics v1.1.3 ⌃ [86223c79] Graphs v1.9.0 [cd3eb016] HTTP v1.10.19 [b5f81e59] IOCapture v1.0.0 [d25df0c9] Inflate v0.1.5 [c8e1da08] IterTools v1.10.0 ⌅ [033835bb] JLD2 v0.4.55 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [fc18253b] LazyJSON v0.2.2 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.2 [6fafb56a] Memoization v0.2.2 ⌅ [626554b9] MetaGraphs v0.7.2 [e1d29d7a] Missings v1.2.0 ⌅ [6c89ec66] MolecularGraph v0.13.0 [bf3818bd] MolecularGraphKernels v0.11.0 [77ba4419] NaNMath v1.1.3 [4d1e1d77] Nullables v1.0.0 [4d8831e6] OpenSSL v1.6.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [7b2266bf] PeriodicTable v1.2.1 [91cefc8d] PrecompileSignatures v3.0.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 ⌅ [f8a19df8] PropertyDicts v0.1.2 [44044271] RDKitMinimalLib v1.2.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.25.1 [cbff2730] Unmarshal v0.4.4 [ddb6d928] YAML v0.4.14 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [2e619515] Expat_jll v2.7.3+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [7746bdde] Glib_jll v2.86.0+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [e9f186c6] Libffi_jll v3.4.7+0 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [c8ffd9c3] MbedTLS_jll v2.28.10+0 [36c8627f] Pango_jll v1.56.4+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [03d1d220] RDKit_jll v2022.9.5+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 ⌅ [28df3c45] boost_jll v1.76.0+1 [f6050b86] coordgenlibs_jll v3.0.2+0 [172afb32] libinchi_jll v1.6.0+0 [b53b4c65] libpng_jll v1.6.50+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Method definition PNG(Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Compose.PNG), Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition PDF(Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Compose.PDF), Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition PS(Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Compose.PS), Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition _dummy_backedge() in module Memoization at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:49 overwritten at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:65. o o 8 8 .oPYo. 8 o o 8 8b d8 8 8 8 8 8 8 .P 8 8`b d'8 .oPYo. 8 .oPYo. .oPYo. o o 8 .oPYo. oPYo. 8 oPYo. .oPYo. .oPYo. 8oPYo. o8ob' .oPYo. oPYo. odYo. .oPYo. 8 .oPYo. 8 `o' 8 8 8 8 8oooo8 8 ' 8 8 8 .oooo8 8 `' 8 oo 8 `' .oooo8 8 8 8 8 8 `b 8oooo8 8 `' 8' `8 8oooo8 8 Yb.. 8 8 8 8 8 8. 8 . 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8. 8 8 8 8. 8 'Yb. 8 8 `YooP' 8 `Yooo' `YooP' `YooP' 8 `YooP8 8 `YooP8 8 `YooP8 8YooP' 8 8 8 8 `Yooo' 8 8 8 `Yooo' 8 `YooP' ..::::..:.....:..:.....::.....::.....:..:.....:..:::::....8 ..:::::.....:8 ....:..:::..:..::..:.....:..::::..::..:.....:..:.....::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::8 :::::::::::::8 :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::..:::::::::::::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::: Test Summary: | Pass Total Time __init__ | 1 1 0.7s Test Summary: | Pass Total Time ProductGraph Interface | 18 18 28.5s Test Summary: | Pass Total Time isomorphism detection | 6 6 22.3s MetaGraphs | 4 4 4.0s Adjacency matrix vs ProductGraph | 2 2 18.2s Test Summary: | Pass Total Time graph conversion | 6 6 1.1s GraphMol to MetaGraph | 4 4 0.3s ProductGraph to ProductGraph | 1 1 0.7s ProductGraph to adjacency matrix | 1 1 0.1s Test Summary: | Pass Total Time direct product graph | 1 1 2.0s Test Summary: | Pass Total Time modular product graph | 5 5 3.1s Test Summary: | Pass Total Time product graph adjacency matrices | 8 8 0.7s MolecularGraphKernels.Direct | 4 4 0.1s MolecularGraphKernels.Modular | 4 4 0.5s Test Summary: | Pass Total Time SMILES flexibility and symmetry | 30 30 0.4s MolecularGraphKernels.Modular | 15 15 0.4s MolecularGraphKernels.Direct | 15 15 0.0s Test Summary: | Pass Total Time Type Flexibility | 2 2 0.0s MolecularGraphKernels.Modular | 1 1 0.0s MolecularGraphKernels.Direct | 1 1 0.0s Test Summary: | Pass Total Time con_sub_g | 14 14 30.2s Test Summary: | Pass Total Time Graph Kernels | 13 13 42.4s Random Walk | 6 6 4.4s ethanol-acetic acid test (EZ to count) | 4 4 16.9s Connected Common Subgraph Isomorphism | 2 2 17.9s All-Connected Graphlet Kernel | 1 1 3.1s ◐ Pushing jobs to queue Time: 0:00:00 ✓ Pushing jobs to queue Time: 0:00:00 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:01 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:00 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:09 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:00 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:00 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:00 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:00 Calculating Gram matrix 0%| | ETA: N/A Calculating Gram matrix 100%|███████████████████████████| Time: 0:00:00 Test Summary: | Pass Total Time Gram matrix | 16 16 26.9s Random Walk Kernel | 4 4 12.1s Connected Common Subgraph Isomorphism Kernel | 7 7 11.2s Normalization | 1 1 1.1s Time Limit | 1 1 0.3s Kernel vector | 3 3 2.2s Test Summary: | Pass Total Time VizGraphKwargs | 4 4 0.3s [ Info: MetaGraph test visualization in benzene.pdf [ Info: Direct Product Graph test visualization in dpg.pdf [ Info: Modular Product Graph test visualization in mpg.pdf Test Summary: | Pass Total Time Graph Types | 6 6 1m19.2s MetaGraph | 2 2 13.7s Direct Product Graph | 2 2 4.8s Modular Product Graph | 2 2 5.2s [ Info: spring test visualization in spring.pdf [ Info: circular test visualization in circular.pdf [ Info: spectral test visualization in spectral.pdf Test Summary: | Pass Total Time Graph Plot Styles | 7 7 2.5s spring | 2 2 0.0s circular | 2 2 0.0s spectral | 2 2 2.1s bogus_style | 1 1 0.0s [ Info: edge mask test visualization in edge_mask.pdf [ Info: node mask test visualization in node_mask.pdf Test Summary: | Pass Total Time Alpha Mask | 4 4 1.4s edges | 2 2 0.7s nodes | 2 2 0.7s [ Info: example test visualization in bee-tox.pdf Test Summary: | Pass Total Time Examples | 2 2 0.3s example | 2 2 0.0s [ Info: random color test visualization in custom-style.pdf Test Summary: | Pass Total Time Custom style functions | 2 2 3.1s random color | 2 2 2.8s Test Summary: | Pass Total Time MACCS Fingerprint | 1 1 1.1s Test Summary: | Pass Total Time misc | 5 5 3.1s display | 1 1 1.4s MPG isomorphic subgraphs | 4 4 1.6s [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Doctests: MolecularGraphKernels | 1 1 25.0s Testing MolecularGraphKernels tests passed Testing completed after 342.9s PkgEval succeeded after 494.34s