Package evaluation to test EcologicalNetworksDynamics on Julia 1.14.0-DEV.24 (d5fb6bbb43*) started at 2025-11-03T02:00:24.930 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.62s ################################################################################ # Installation # Installing EcologicalNetworksDynamics... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [2fd9189a] + EcologicalNetworksDynamics v0.3.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [a95523ee] + AlmostBlockDiagonals v0.1.10 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.0 [aae01518] + BandedMatrices v1.10.1 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] + BoundaryValueDiffEq v5.18.0 [7227322d] + BoundaryValueDiffEqAscher v1.8.0 [56b672f2] + BoundaryValueDiffEqCore v1.11.1 [85d9eb09] + BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] + BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] + BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] + BoundaryValueDiffEqShooting v1.9.0 [70df07ce] + BracketingNonlinearSolve v1.5.0 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [abce61dc] + Decimals v0.5.1 [bcd4f6db] + DelayDiffEq v5.61.0 [2b5f629d] + DiffEqBase v6.190.2 [459566f4] + DiffEqCallbacks v4.10.1 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [0c46a032] + DifferentialEquations v7.17.0 [a0c0ee7d] + DifferentiationInterface v0.7.10 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [2fd9189a] + EcologicalNetworksDynamics v0.3.1 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.15 [460bff9d] + ExceptionUnwrapping v0.1.11 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [411431e0] + Extents v0.1.6 [9d29842c] + FastAlmostBandedMatrices v0.1.5 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [a4df4552] + FastPower v1.2.0 [1a297f60] + FillArrays v1.14.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.2.2 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.6 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.6.0 [86223c79] + Graphs v1.13.1 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.19.1 [ba0b0d4f] + Krylov v0.10.2 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.8.0 [2d8b4e74] + LevyArea v1.0.0 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [7ed4a6bd] + LinearSolve v3.46.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [b8b640a6] + Mangal v0.5.1 [d125e4d3] + ManualMemory v0.1.8 [a3b82374] + MatrixFactorizations v3.1.3 [bb5d69b7] + MaybeInplace v0.1.4 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [d41bc354] + NLSolversBase v7.10.0 [2774e3e8] + NLsolve v4.5.1 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.12.0 [be0214bd] + NonlinearSolveBase v2.0.0 [5959db7a] + NonlinearSolveFirstOrder v1.9.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.10.0 [26075421] + NonlinearSolveSpectralMethods v1.5.0 [4d8831e6] + OpenSSL v1.6.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [1dea7af3] + OrdinaryDiffEq v6.103.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 [6ad6398a] + OrdinaryDiffEqBDF v1.10.1 [bbf590c4] + OrdinaryDiffEqCore v1.36.0 [50262376] + OrdinaryDiffEqDefault v1.8.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.16.1 [9286f039] + OrdinaryDiffEqExplicitRK v1.4.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.8.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.9.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.16.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.5.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.7.0 [521117fe] + OrdinaryDiffEqLinear v1.6.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.6.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.7.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.15.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.4.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.6.0 [5b33eab2] + OrdinaryDiffEqPRK v1.4.0 [04162be5] + OrdinaryDiffEqQPRK v1.4.0 [af6ede74] + OrdinaryDiffEqRKN v1.5.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.18.1 [2d112036] + OrdinaryDiffEqSDIRK v1.7.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.7.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.6.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.4.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.7.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.5.0 [79d7bb75] + OrdinaryDiffEqVerner v1.6.0 [90014a1f] + PDMats v0.11.36 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.39.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.124.0 [19f34311] + SciMLJacobianOperators v0.1.11 [a6db7da4] + SciMLLogging v1.3.1 [c0aeaf25] + SciMLOperators v1.9.0 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [727e6d20] + SimpleNonlinearSolve v2.9.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [9f842d2f] + SparseConnectivityTracer v1.1.2 [0a514795] + SparseMatrixColorings v0.4.23 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [4c63d2b9] + StatsFuns v1.5.2 [9672c7b4] + SteadyStateDiffEq v2.7.0 [789caeaf] + StochasticDiffEq v6.84.0 [7792a7ef] + StrideArraysCore v0.5.8 [f22f4433] + StringCases v0.1.0 [c3572dad] + Sundials v5.1.0 [2efcf032] + SymbolicIndexingInterface v0.3.46 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.10+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [ca45d3f4] + SuiteSparse32_jll v7.11.0+0 [fb77eaff] + Sundials_jll v7.5.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.09s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 2751.5 ms ✓ GeoInterface → GeoInterfaceRecipesBaseExt 5879.8 ms ✓ Mangal 12091.2 ms ✓ Distributions 4403.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 9887.8 ms ✓ LinearSolve → LinearSolveFastAlmostBandedMatricesExt 3523.0 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 7223.0 ms ✓ Optim 4252.2 ms ✓ Distributions → DistributionsTestExt 3773.1 ms ✓ Distributions → DistributionsChainRulesCoreExt 4645.9 ms ✓ SciMLBase → SciMLBaseDistributionsExt 44459.5 ms ✓ NonlinearSolveFirstOrder 3675.1 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 18779.3 ms ✓ SimpleNonlinearSolve 8576.3 ms ✓ DiffEqNoiseProcess 13554.3 ms ✓ BoundaryValueDiffEqCore 4593.7 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 14006.1 ms ✓ BoundaryValueDiffEqAscher 231920.0 ms ✓ BoundaryValueDiffEqFIRK 141380.4 ms ✓ BoundaryValueDiffEqMIRK 19156.3 ms ✓ BoundaryValueDiffEqShooting 18676.9 ms ✓ BoundaryValueDiffEqMIRKN 32202.6 ms ✓ NonlinearSolve 36963.3 ms ✓ BoundaryValueDiffEq 12648.5 ms ✓ NonlinearSolve → NonlinearSolveSundialsExt 10894.1 ms ✓ NonlinearSolve → NonlinearSolveNLsolveExt 15124.7 ms ✓ OrdinaryDiffEqNonlinearSolve 54635.6 ms ✓ OrdinaryDiffEqFIRK 13617.7 ms ✓ OrdinaryDiffEqIMEXMultistep 16161.3 ms ✓ OrdinaryDiffEqStabilizedIRK 19798.3 ms ✓ OrdinaryDiffEqPDIRK 19595.2 ms ✓ OrdinaryDiffEqSDIRK 24182.1 ms ✓ StochasticDiffEq 36802.5 ms ✓ OrdinaryDiffEqBDF 79668.0 ms ✓ OrdinaryDiffEqDefault 26112.7 ms ✓ OrdinaryDiffEq 28243.5 ms ✓ DelayDiffEq 73908.4 ms ✓ DifferentialEquations 293619.6 ms ✓ EcologicalNetworksDynamics 38 dependencies successfully precompiled in 1379 seconds. 311 already precompiled. Precompilation completed after 1385.27s ################################################################################ # Testing # Testing EcologicalNetworksDynamics Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_ggxUD4/Project.toml` [5224ae11] + CompatHelperLocal v0.1.27 [e30172f5] + Documenter v1.15.0 [2fd9189a] + EcologicalNetworksDynamics v0.3.1 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [a4af3ec5] + SyntaxTree v1.0.1 Updating `/tmp/jl_ggxUD4/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [00ebfdb7] + CSTParser v3.4.3 ⌅ [a80b9123] + CommonMark v0.8.16 [5224ae11] + CompatHelperLocal v0.1.27 ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [e30172f5] + Documenter v1.15.0 [2fd9189a] + EcologicalNetworksDynamics v0.3.1 [d7ba0133] + Git v1.5.0 [c27321d9] + Glob v1.3.1 ⌅ [b5f81e59] + IOCapture v0.2.5 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [0e77f7df] + LazilyInitializedFields v1.3.0 [d0879d2d] + MarkdownAST v0.1.2 [2792f1a3] + RegistryInstances v0.1.0 [a4af3ec5] + SyntaxTree v1.0.1 [0796e94c] + Tokenize v0.5.29 [2e619515] + Expat_jll v2.7.3+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.51.3+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [3fa0cd96] + REPL v1.11.0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_ggxUD4/Project.toml` [5224ae11] CompatHelperLocal v0.1.27 [a8cc5b0e] Crayons v4.1.1 [abce61dc] Decimals v0.5.1 [2b5f629d] DiffEqBase v6.190.2 [459566f4] DiffEqCallbacks v4.10.1 [0c46a032] DifferentialEquations v7.17.0 [31c24e10] Distributions v0.25.122 [e30172f5] Documenter v1.15.0 [2fd9189a] EcologicalNetworksDynamics v0.3.1 [86223c79] Graphs v1.13.1 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [1914dd2f] MacroTools v0.5.16 [b8b640a6] Mangal v0.5.1 [bac558e1] OrderedCollections v1.8.1 [0bca4576] SciMLBase v2.124.0 [10745b16] Statistics v1.11.1 [f22f4433] StringCases v0.1.0 [a4af3ec5] SyntaxTree v1.0.1 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 Status `/tmp/jl_ggxUD4/Manifest.toml` [47edcb42] ADTypes v1.18.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [a95523ee] AlmostBlockDiagonals v0.1.10 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.0 [aae01518] BandedMatrices v1.10.1 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] BoundaryValueDiffEq v5.18.0 [7227322d] BoundaryValueDiffEqAscher v1.8.0 [56b672f2] BoundaryValueDiffEqCore v1.11.1 [85d9eb09] BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] BoundaryValueDiffEqShooting v1.9.0 [70df07ce] BracketingNonlinearSolve v1.5.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [00ebfdb7] CSTParser v3.4.3 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.8.16 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [5224ae11] CompatHelperLocal v0.1.27 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [abce61dc] Decimals v0.5.1 [bcd4f6db] DelayDiffEq v5.61.0 [2b5f629d] DiffEqBase v6.190.2 [459566f4] DiffEqCallbacks v4.10.1 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [0c46a032] DifferentialEquations v7.17.0 [a0c0ee7d] DifferentiationInterface v0.7.10 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.15.0 [2fd9189a] EcologicalNetworksDynamics v0.3.1 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.15 [460bff9d] ExceptionUnwrapping v0.1.11 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [411431e0] Extents v0.1.6 [9d29842c] FastAlmostBandedMatrices v0.1.5 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.2.0 [1a297f60] FillArrays v1.14.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.2.2 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.6 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.6.0 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.1 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [ccbc3e58] JumpProcesses v9.19.1 [ba0b0d4f] Krylov v0.10.2 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [5078a376] LazyArrays v2.8.0 [2d8b4e74] LevyArea v1.0.0 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.4.0 [7ed4a6bd] LinearSolve v3.46.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [b8b640a6] Mangal v0.5.1 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.2 [a3b82374] MatrixFactorizations v3.1.3 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.10.0 [2774e3e8] NLsolve v4.5.1 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.12.0 [be0214bd] NonlinearSolveBase v2.0.0 [5959db7a] NonlinearSolveFirstOrder v1.9.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.10.0 [26075421] NonlinearSolveSpectralMethods v1.5.0 [4d8831e6] OpenSSL v1.6.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.103.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 [6ad6398a] OrdinaryDiffEqBDF v1.10.1 [bbf590c4] OrdinaryDiffEqCore v1.36.0 [50262376] OrdinaryDiffEqDefault v1.8.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.16.1 [9286f039] OrdinaryDiffEqExplicitRK v1.4.0 [e0540318] OrdinaryDiffEqExponentialRK v1.8.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.9.0 [5960d6e9] OrdinaryDiffEqFIRK v1.16.0 [101fe9f7] OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.5.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.7.0 [521117fe] OrdinaryDiffEqLinear v1.6.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.6.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.7.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.15.0 [c9986a66] OrdinaryDiffEqNordsieck v1.4.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.6.0 [5b33eab2] OrdinaryDiffEqPRK v1.4.0 [04162be5] OrdinaryDiffEqQPRK v1.4.0 [af6ede74] OrdinaryDiffEqRKN v1.5.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.18.1 [2d112036] OrdinaryDiffEqSDIRK v1.7.0 [669c94d9] OrdinaryDiffEqSSPRK v1.7.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.6.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.4.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.7.0 [b1df2697] OrdinaryDiffEqTsit5 v1.5.0 [79d7bb75] OrdinaryDiffEqVerner v1.6.0 [90014a1f] PDMats v0.11.36 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [e409e4f3] PoissonRandom v0.4.7 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.39.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [ae5879a3] ResettableStacks v1.1.1 [79098fc4] Rmath v0.9.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.124.0 [19f34311] SciMLJacobianOperators v0.1.11 [a6db7da4] SciMLLogging v1.3.1 [c0aeaf25] SciMLOperators v1.9.0 [431bcebd] SciMLPublic v1.0.0 [53ae85a6] SciMLStructures v1.7.0 [7e506255] ScopedValues v1.5.0 [efcf1570] Setfield v1.1.2 [777ac1f9] SimpleBufferStream v1.2.0 [727e6d20] SimpleNonlinearSolve v2.9.0 [699a6c99] SimpleTraits v0.9.5 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.2 [9f842d2f] SparseConnectivityTracer v1.1.2 [0a514795] SparseMatrixColorings v0.4.23 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.7 [4c63d2b9] StatsFuns v1.5.2 [9672c7b4] SteadyStateDiffEq v2.7.0 [789caeaf] StochasticDiffEq v6.84.0 [7792a7ef] StrideArraysCore v0.5.8 [f22f4433] StringCases v0.1.0 [c3572dad] Sundials v5.1.0 [2efcf032] SymbolicIndexingInterface v0.3.46 [a4af3ec5] SyntaxTree v1.0.1 [1c621080] TestItems v1.0.0 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [0796e94c] Tokenize v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [781d530d] TruncatedStacktraces v1.4.0 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [2e619515] Expat_jll v2.7.3+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.51.3+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 [c8ffd9c3] MbedTLS_jll v2.28.10+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [ca45d3f4] SuiteSparse32_jll v7.11.0+0 [fb77eaff] Sundials_jll v7.5.0+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 165 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1223 wait_forever at ./task.jl:1145 jfptr_wait_forever_69311.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000078fcc354dff0 Total snapshots: 443. Utilization: 0% ╎443 @Base/task.jl:1145 wait_forever() 442╎ 443 @Base/task.jl:1223 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1223 wait_forever at ./task.jl:1145 jfptr_wait_forever_69311.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000076b6de58d2d0 Total snapshots: 425. Utilization: 0% ╎425 @Base/task.jl:1145 wait_forever() 424╎ 425 @Base/task.jl:1223 wait() [165] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/EcologicalNetworksDynamics/BMO1A/test/dedicated_test_failures/aliasing.jl:3 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1223 wait_forever at ./task.jl:1145 jfptr_wait_forever_69311.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 15434980 (Pool: 15434436; Big: 544); GC: 79 [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1223 wait_forever at ./task.jl:1145 jfptr_wait_forever_69311.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 24974609 (Pool: 24973948; Big: 661); GC: 28 PkgEval terminated after 2738.9s: test duration exceeded the time limit