Package evaluation to test TractableTimeTreeDistributions on Julia 1.14.0-DEV.14 (ec5cf08762*) started at 2025-10-31T02:18:06.941 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.72s ################################################################################ # Installation # Installing TractableTimeTreeDistributions... Resolving package versions... Installed libaom_jll ───────────────────── v3.13.1+0 Installed Qt6Base_jll ──────────────────── v6.8.2+2 Installed Libuuid_jll ──────────────────── v2.41.2+0 Installed libass_jll ───────────────────── v0.17.4+0 Installed HarfBuzz_jll ─────────────────── v8.5.1+0 Installed Bzip2_jll ────────────────────── v1.0.9+0 Installed InlineStrings ────────────────── v1.4.5 Installed MultivariateStats ────────────── v0.10.3 Installed MKL_jll ──────────────────────── v2025.2.0+0 Installed Libtiff_jll ──────────────────── v4.7.2+0 Installed Cairo_jll ────────────────────── v1.18.5+0 Installed Xorg_libXinerama_jll ─────────── v1.1.6+0 Installed PlotThemes ───────────────────── v3.3.0 Installed OrderedCollections ───────────── v1.8.1 Installed Functors ─────────────────────── v0.5.2 Installed NearestNeighbors ─────────────── v0.4.22 Installed Graphite2_jll ────────────────── v1.3.15+0 Installed libinput_jll ─────────────────── v1.28.1+0 Installed Fontconfig_jll ───────────────── v2.17.1+0 Installed fzf_jll ──────────────────────── v0.61.1+0 Installed SentinelArrays ───────────────── v1.4.8 Installed Distances ────────────────────── v0.10.12 Installed QuadGK ───────────────────────── v2.11.2 Installed HypothesisTests ──────────────── v0.11.6 Installed NaNMath ──────────────────────── v1.1.3 Installed OpenSpecFun_jll ──────────────── v0.5.6+0 Installed Opus_jll ─────────────────────── v1.5.2+0 Installed Widgets ──────────────────────── v0.6.7 Installed WoodburyMatrices ─────────────── v1.0.0 Installed Arpack ───────────────────────── v0.5.4 Installed Ogg_jll ──────────────────────── v1.3.6+0 Installed Tables ───────────────────────── v1.12.1 Installed LoweredCodeUtils ─────────────── v3.2.2 Installed Xorg_libxcb_jll ──────────────── v1.17.1+0 Installed Reexport ─────────────────────── v1.2.2 Installed Unzip ────────────────────────── v0.2.0 Installed LZO_jll ──────────────────────── v2.10.3+0 Installed InverseFunctions ─────────────── v0.1.17 Installed Xorg_xcb_util_wm_jll ─────────── v0.4.2+0 Installed Preferences ──────────────────── v1.5.0 Installed FFMPEG ───────────────────────── v0.4.5 Installed LERC_jll ─────────────────────── v4.0.1+0 Installed Missings ─────────────────────── v1.2.0 Installed LaTeXStrings ─────────────────── v1.4.0 Installed LLVMOpenMP_jll ───────────────── v18.1.8+0 Installed TableTraits ──────────────────── v1.0.1 Installed SortingAlgorithms ────────────── v1.2.2 Installed Crayons ──────────────────────── v4.1.1 Installed Xorg_libICE_jll ──────────────── v1.1.2+0 Installed eudev_jll ────────────────────── v3.2.14+0 Installed RangeArrays ──────────────────── v0.3.2 Installed Grisu ────────────────────────── v1.0.2 Installed EpollShim_jll ────────────────── v0.0.20230411+1 Installed Format ───────────────────────── v1.3.7 Installed Inflate ──────────────────────── v0.1.5 Installed JET ──────────────────────────── v0.9.20 Installed MacroTools ───────────────────── v0.5.16 Installed DataStructures ───────────────── v0.18.22 Installed Phylo ────────────────────────── v0.5.4 Installed URIs ─────────────────────────── v1.6.1 Installed FillArrays ───────────────────── v1.14.0 Installed oneTBB_jll ───────────────────── v2022.0.0+1 Installed ArnoldiMethod ────────────────── v0.4.0 Installed DelimitedFiles ───────────────── v1.9.1 Installed Xorg_xcb_util_jll ────────────── v0.4.1+0 Installed StatsBase ────────────────────── v0.34.7 Installed UnicodeFun ───────────────────── v0.4.1 Installed x264_jll ─────────────────────── v10164.0.1+0 Installed Xorg_libXau_jll ──────────────── v1.0.13+0 Installed Observables ──────────────────── v0.5.5 Installed CodecZlib ────────────────────── v0.7.8 Installed Xorg_libXfixes_jll ───────────── v6.0.2+0 Installed mtdev_jll ────────────────────── v1.1.7+0 Installed Qt6ShaderTools_jll ───────────── v6.8.2+1 Installed IntelOpenMP_jll ──────────────── v2025.2.0+0 Installed CEnum ────────────────────────── v0.5.0 Installed DataValueInterfaces ──────────── v1.0.0 Installed MCMCDiagnosticTools ──────────── v0.3.15 Installed LoggingExtras ────────────────── v1.2.0 Installed Libffi_jll ───────────────────── v3.4.7+0 Installed Pixman_jll ───────────────────── v0.44.2+0 Installed StructUtils ──────────────────── v2.5.1 Installed Expat_jll ────────────────────── v2.7.3+0 Installed IrrationalConstants ──────────── v0.2.6 Installed libdecor_jll ─────────────────── v0.2.2+0 Installed Xorg_libXcursor_jll ──────────── v1.2.4+0 Installed libpng_jll ───────────────────── v1.6.50+0 Installed Clustering ───────────────────── v0.15.8 Installed HTTP ─────────────────────────── v1.10.19 Installed Contour ──────────────────────── v0.6.3 Installed ColorVectorSpace ─────────────── v0.11.0 Installed SimpleTraits ─────────────────── v0.9.5 Installed StableRNGs ───────────────────── v1.0.3 Installed Xorg_xcb_util_keysyms_jll ────── v0.4.1+0 Installed Roots ────────────────────────── v2.2.10 Installed DataValues ───────────────────── v0.4.13 Installed Interpolations ───────────────── v0.16.2 Installed libfdk_aac_jll ───────────────── v2.0.4+0 Installed BitFlags ─────────────────────── v0.1.9 Installed Scratch ──────────────────────── v1.3.0 Installed FFMPEG_jll ───────────────────── v8.0.0+0 Installed PooledArrays ─────────────────── v1.4.3 Installed SimpleBufferStream ───────────── v1.2.0 Installed PDMats ───────────────────────── v0.11.36 Installed TractableTimeTreeDistributions ─ v0.1.0 Installed Qt6Declarative_jll ───────────── v6.8.2+1 Installed FASTX ────────────────────────── v2.1.7 Installed AxisArrays ───────────────────── v0.4.8 Installed WorkerUtilities ──────────────── v1.6.1 Installed ParserCombinator ─────────────── v2.2.1 Installed BioSequences ─────────────────── v3.5.0 Installed TableOperations ──────────────── v1.2.0 Installed DocStringExtensions ──────────── v0.9.5 Installed CompositionsBase ─────────────── v0.1.2 Installed CommonSolve ──────────────────── v0.2.4 Installed Rmath_jll ────────────────────── v0.5.1+0 Installed RelocatableFolders ───────────── v1.0.1 Installed Ghostscript_jll ──────────────── v9.55.1+0 Installed StringViews ──────────────────── v1.3.5 Installed Plots ────────────────────────── v1.41.1 Installed KernelDensity ────────────────── v0.6.10 Installed JLFzf ────────────────────────── v0.1.11 Installed AliasTables ──────────────────── v1.1.3 Installed ConcurrentUtilities ──────────── v2.5.0 Installed Combinatorics ────────────────── v1.0.3 Installed Memoization ──────────────────── v0.2.2 Installed IteratorInterfaceExtensions ──── v1.0.0 Installed RecipesBase ──────────────────── v1.3.4 Installed SIMD ─────────────────────────── v3.7.2 Installed DataAPI ──────────────────────── v1.16.0 Installed Xorg_libXi_jll ───────────────── v1.8.3+0 Installed InvertedIndices ──────────────── v1.3.1 Installed libevdev_jll ─────────────────── v1.13.4+0 Installed Wayland_jll ──────────────────── v1.24.0+0 Installed Measures ─────────────────────── v0.3.2 Installed Colors ───────────────────────── v0.13.1 Installed StaticArraysCore ─────────────── v1.4.4 Installed StaticArrays ─────────────────── v1.9.15 Installed Xorg_libxkbfile_jll ──────────── v1.1.3+0 Installed Twiddle ──────────────────────── v1.1.2 Installed Tokenize ─────────────────────── v0.5.29 Installed CodeTracking ─────────────────── v1.3.9 Installed Libglvnd_jll ─────────────────── v1.7.1+1 Installed AxisAlgorithms ───────────────── v1.1.0 Installed AbstractFFTs ─────────────────── v1.5.0 Installed Latexify ─────────────────────── v0.16.10 Installed ColorTypes ───────────────────── v0.12.1 Installed StringManipulation ───────────── v0.4.1 Installed Xorg_xkbcomp_jll ─────────────── v1.4.7+0 Installed Glib_jll ─────────────────────── v2.86.0+0 Installed Requires ─────────────────────── v1.3.1 Installed LogExpFunctions ──────────────── v0.3.29 Installed JSON ─────────────────────────── v1.2.0 Installed JuliaSyntax ──────────────────── v0.4.10 Installed JuliaInterpreter ─────────────── v0.9.46 Installed PrettyTables ─────────────────── v3.1.0 Installed Vulkan_Loader_jll ────────────── v1.3.243+0 Installed Xorg_xcb_util_cursor_jll ─────── v0.1.6+0 Installed Distributions ────────────────── v0.25.122 Installed Parsers ──────────────────────── v2.8.3 Installed Rmath ────────────────────────── v0.9.0 Installed Arpack_jll ───────────────────── v3.5.1+1 Installed StatsPlots ───────────────────── v0.15.8 Installed Xorg_xcb_util_renderutil_jll ─── v0.3.10+0 Installed AutoHashEquals ───────────────── v2.2.0 Installed StatsFuns ────────────────────── v1.5.2 Installed Unitful ──────────────────────── v1.25.1 Installed BioGenerics ──────────────────── v0.1.5 Installed Xorg_libXdmcp_jll ────────────── v1.1.6+0 Installed PhyloNetworks ────────────────── v1.2.0 Installed Xorg_xkeyboard_config_jll ────── v2.44.0+0 Installed Xorg_libSM_jll ───────────────── v1.2.6+0 Installed WeakRefStrings ───────────────── v1.4.2 Installed JLLWrappers ──────────────────── v1.7.1 Installed DataFrames ───────────────────── v1.8.1 Installed ColorSchemes ─────────────────── v3.31.0 Installed XZ_jll ───────────────────────── v5.8.1+0 Installed x265_jll ─────────────────────── v4.1.0+0 Installed Pango_jll ────────────────────── v1.56.4+0 Installed RecipesPipeline ──────────────── v0.6.12 Installed NLopt ────────────────────────── v1.2.1 Installed IterTools ────────────────────── v1.10.0 Installed Graphs ───────────────────────── v1.13.1 Installed StatisticalTraits ────────────── v3.5.0 Installed Xorg_xtrans_jll ──────────────── v1.6.0+0 Installed GR_jll ───────────────────────── v0.73.17+0 Installed JpegTurbo_jll ────────────────── v3.1.3+0 Installed Accessors ────────────────────── v0.1.42 Installed Dbus_jll ─────────────────────── v1.16.2+0 Installed FilePathsBase ────────────────── v0.9.24 Installed Adapt ────────────────────────── v4.4.0 Installed Libmount_jll ─────────────────── v2.41.2+0 Installed ExceptionUnwrapping ──────────── v0.1.11 Installed ConstructionBase ─────────────── v1.6.0 Installed HypergeometricFunctions ──────── v0.3.28 Installed Xorg_libX11_jll ──────────────── v1.8.12+0 Installed Compat ───────────────────────── v4.18.1 Installed TranscodingStreams ───────────── v0.11.3 Installed PlotUtils ────────────────────── v1.4.3 Installed TensorCore ───────────────────── v0.1.1 Installed Statistics ───────────────────── v1.11.1 Installed StatsAPI ─────────────────────── v1.7.1 Installed OffsetArrays ─────────────────── v1.17.0 Installed PrecompileTools ──────────────── v1.3.3 Installed OpenSSL ──────────────────────── v1.5.0 Installed MbedTLS ──────────────────────── v1.1.9 Installed CSV ──────────────────────────── v0.10.15 Installed Xorg_xcb_util_image_jll ──────── v0.4.1+0 Installed xkbcommon_jll ────────────────── v1.9.2+0 Installed TableTraitsUtils ─────────────── v1.0.2 Installed BioSymbols ───────────────────── v5.2.0 Installed GettextRuntime_jll ───────────── v0.22.4+0 Installed Ratios ───────────────────────── v0.4.5 Installed FriBidi_jll ──────────────────── v1.0.17+0 Installed ChainRulesCore ───────────────── v1.26.0 Installed GLFW_jll ─────────────────────── v3.4.0+2 Installed LAME_jll ─────────────────────── v3.100.3+0 Installed Xorg_libXrender_jll ──────────── v0.9.12+0 Installed PtrArrays ────────────────────── v1.3.0 Installed libvorbis_jll ────────────────── v1.3.8+0 Installed IntervalSets ─────────────────── v0.7.11 Installed IterableTables ───────────────── v1.0.0 Installed ScientificTypesBase ──────────── v3.0.0 Installed Showoff ──────────────────────── v1.0.3 Installed FixedPointNumbers ────────────── v0.8.5 Installed FreeType2_jll ────────────────── v2.13.4+0 Installed SpecialFunctions ─────────────── v2.6.1 Installed FFTW ─────────────────────────── v1.10.0 Installed Libiconv_jll ─────────────────── v1.18.0+0 Installed Xorg_libXrandr_jll ───────────── v1.5.5+0 Installed FFTW_jll ─────────────────────── v3.3.11+0 Installed Xorg_libXext_jll ─────────────── v1.3.7+0 Installed MbedTLS_jll ──────────────────── v2.28.10+0 Installed Qt6Wayland_jll ───────────────── v6.8.2+2 Installed Automa ───────────────────────── v1.1.0 Installed NLopt_jll ────────────────────── v2.10.0+0 Installed MLJModelInterface ────────────── v1.12.0 Installed GR ───────────────────────────── v0.73.17 Installing 80 artifacts Installed artifact Xorg_xcb_util_image 54.3 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Ogg 250.3 KiB Installed artifact Expat 283.3 KiB Installed artifact NLopt 322.7 KiB Installed artifact Pango 1.1 MiB Installed artifact Xorg_xcb_util 39.5 KiB Installed artifact LZO 208.9 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Dbus 489.8 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Libuuid 3.7 MiB Installed artifact libvorbis 271.0 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Arpack 147.2 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact mtdev 79.6 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact Xorg_xcb_util_wm 147.9 KiB Installed artifact XZ 1.5 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact libaom 6.4 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Glib 7.7 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Fontconfig 984.8 KiB Installed artifact FFTW 2.2 MiB Installed artifact Opus 925.5 KiB Installed artifact Pixman 372.2 KiB Installed artifact Cairo 2.2 MiB Installed artifact LERC 272.9 KiB Installed artifact GLFW 180.1 KiB Installed artifact libpng 328.4 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact x265 1.4 MiB Installed artifact Xorg_xcb_util_keysyms 17.8 KiB Installed artifact libass 427.8 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Qt6Wayland 2.2 MiB Installed artifact eudev 3.9 MiB Installed artifact libdecor 44.1 KiB Installed artifact Wayland 390.6 KiB Installed artifact xkbcommon 263.7 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Xorg_libICE 384.9 KiB Installed artifact Xorg_libSM 164.1 KiB Installed artifact Libffi 44.2 KiB Installed artifact Xorg_xcb_util_renderutil 32.1 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact libevdev 117.1 KiB Installed artifact libinput 1.0 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Qt6Base 20.6 MiB Installed artifact Qt6ShaderTools 2.1 MiB Installed artifact Xorg_xcb_util_cursor 27.6 KiB Installed artifact Rmath 121.9 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact x264 2.1 MiB Installed artifact LAME 292.5 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Vulkan_Loader 177.3 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Libtiff 2.3 MiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Ghostscript 31.4 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact GR 16.2 MiB Installed artifact fzf 3.3 MiB Installed artifact Libmount 6.5 MiB Installed artifact FFMPEG 11.7 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Qt6Declarative 21.6 MiB Updating `~/.julia/environments/v1.14/Project.toml` [1ed903b1] + TractableTimeTreeDistributions v0.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [15f4f7f2] + AutoHashEquals v2.2.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.26.0 [aaaa29a8] + Clustering v0.15.8 ⌅ [da1fd8a2] + CodeTracking v1.3.9 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [e7dc6d0d] + DataValues v0.4.13 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [c2308a5c] + FASTX v2.1.7 [c87230d0] + FFMPEG v0.4.5 [7a1cc6ca] + FFTW v1.10.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [d9f16b24] + Functors v0.5.2 [28b8d3ca] + GR v0.73.17 [86223c79] + Graphs v1.13.1 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.19 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.6 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [a98d9a8b] + Interpolations v0.16.2 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [1c8ee90f] + IterableTables v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] + JET v0.9.20 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.2.0 ⌅ [aa1ae85d] + JuliaInterpreter v0.9.46 ⌅ [70703baa] + JuliaSyntax v0.4.10 [5ab0869b] + KernelDensity v0.6.10 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 ⌃ [6f1432cf] + LoweredCodeUtils v3.2.2 [be115224] + MCMCDiagnosticTools v0.3.15 [e80e1ace] + MLJModelInterface v1.12.0 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.2 [6fafb56a] + Memoization v0.2.2 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.3 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [fae87a5f] + ParserCombinator v2.2.1 [69de0a69] + Parsers v2.8.3 [aea672f4] + Phylo v0.5.4 [33ad39ac] + PhyloNetworks v1.2.0 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.3 [91a5bcdd] + Plots v1.41.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays 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[33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [35ca27e7] + eudev_jll v3.2.14+0 [214eeab7] + fzf_jll v0.61.1+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [2db6ffa8] + libevdev_jll v1.13.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [36db933b] + libinput_jll v1.28.1+0 [b53b4c65] + libpng_jll v1.6.50+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [009596ad] + mtdev_jll v1.1.7+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.9.2+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 29.08s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4053.0 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 3468.1 ms ✓ MacroTools 1537.3 ms ✓ InlineStrings 782.1 ms ✓ Reexport 705.6 ms ✓ TensorCore 865.2 ms ✓ ConstructionBase 1640.3 ms ✓ IrrationalConstants 925.5 ms ✓ Measures 597.8 ms ✓ DataValueInterfaces 730.5 ms ✓ StatsAPI 1709.1 ms ✓ Format 941.2 ms ✓ Observables 644.7 ms ✓ Twiddle 868.1 ms ✓ IterTools 806.2 ms ✓ IntervalSets 690.4 ms ✓ CEnum 1604.2 ms ✓ Combinatorics 17977.9 ms ✓ JuliaSyntax 871.7 ms ✓ StringViews 767.6 ms ✓ Inflate 757.2 ms ✓ Contour 655.6 ms ✓ CommonSolve 1090.1 ms ✓ TranscodingStreams 728.4 ms ✓ LaTeXStrings 1018.4 ms ✓ Statistics 1077.8 ms ✓ StaticArraysCore 1236.0 ms ✓ StableRNGs 1122.1 ms ✓ AutoHashEquals 888.0 ms ✓ PtrArrays 960.7 ms ✓ SimpleBufferStream 1101.8 ms ✓ Grisu 693.5 ms ✓ DataAPI 923.3 ms ✓ URIs 687.2 ms ✓ InvertedIndices 705.9 ms ✓ InverseFunctions 619.1 ms ✓ CompositionsBase 707.9 ms ✓ BitFlags 905.5 ms ✓ AbstractFFTs 857.9 ms ✓ WorkerUtilities 1764.5 ms ✓ FillArrays 699.8 ms ✓ ScientificTypesBase 649.4 ms ✓ RangeArrays 948.2 ms ✓ OrderedCollections 3149.2 ms ✓ Tokenize 990.1 ms ✓ DocStringExtensions 816.6 ms ✓ Unzip 1208.4 ms ✓ OffsetArrays 584.6 ms ✓ IteratorInterfaceExtensions 1442.8 ms ✓ Crayons 911.6 ms ✓ DelimitedFiles 784.8 ms ✓ NaNMath 887.6 ms ✓ Requires 1392.1 ms ✓ ConcurrentUtilities 901.8 ms ✓ SuiteSparse 1114.4 ms ✓ WoodburyMatrices 697.7 ms ✓ Scratch 24951.1 ms ✓ Unitful 2571.8 ms ✓ SentinelArrays 1068.7 ms ✓ LoggingExtras 1177.8 ms ✓ StructUtils 2755.7 ms ✓ CodeTracking 2467.6 ms ✓ UnicodeFun 948.4 ms ✓ Compat 866.7 ms ✓ Preferences 1145.5 ms ✓ ExceptionUnwrapping 810.0 ms ✓ Memoization 2557.5 ms ✓ SimpleTraits 728.2 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 3049.5 ms ✓ DataValues 658.3 ms ✓ IntervalSets → IntervalSetsRandomExt 589.2 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 698.1 ms ✓ BioGenerics 710.3 ms ✓ CodecZlib 961.4 ms ✓ Statistics → SparseArraysExt 2831.2 ms ✓ FixedPointNumbers 1108.4 ms ✓ Distances 589.8 ms ✓ IntervalSets → IntervalSetsStatisticsExt 3819.4 ms ✓ ParserCombinator 844.8 ms ✓ AliasTables 698.9 ms ✓ Showoff 778.3 ms ✓ Missings 780.0 ms ✓ PooledArrays 673.5 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1221.5 ms ✓ InverseFunctions → InverseFunctionsTestExt 618.4 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 3166.3 ms ✓ OpenSSL 2691.6 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1133.4 ms ✓ FillArrays → FillArraysSparseArraysExt 723.3 ms ✓ FillArrays → FillArraysStatisticsExt 666.8 ms ✓ StatisticalTraits 1034.7 ms ✓ LogExpFunctions 609.3 ms ✓ TableTraits 672.3 ms ✓ Ratios 1011.9 ms ✓ Adapt 1549.7 ms ✓ PDMats 1298.8 ms ✓ AxisAlgorithms 1029.0 ms ✓ RelocatableFolders 1529.3 ms ✓ Unitful → ConstructionBaseUnitfulExt 1636.9 ms ✓ Unitful → PrintfExt 1534.4 ms ✓ Unitful → InverseFunctionsUnitfulExt 7001.2 ms ✓ JuliaInterpreter 638.4 ms ✓ Compat → CompatLinearAlgebraExt 682.2 ms ✓ PrecompileTools 923.4 ms ✓ JLLWrappers 1159.9 ms ✓ AxisArrays 1962.6 ms ✓ ColorTypes 939.7 ms ✓ Distances → DistancesSparseArraysExt 3530.6 ms ✓ Accessors 2255.1 ms ✓ MLJModelInterface 623.8 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1319.1 ms ✓ Tables 1311.9 ms ✓ TableTraitsUtils 690.0 ms ✓ Ratios → RatiosFixedPointNumbersExt 921.0 ms ✓ Adapt → AdaptSparseArraysExt 622.3 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1082.7 ms ✓ FillArrays → FillArraysPDMatsExt 12814.1 ms ✓ LoweredCodeUtils 1956.0 ms ✓ ChainRulesCore 1768.6 ms ✓ FilePathsBase 3042.6 ms ✓ DataStructures 986.8 ms ✓ Functors 1953.4 ms ✓ BioSymbols 2430.9 ms ✓ StringManipulation Precompilation completed after 227.79s ################################################################################ # Testing # Testing TractableTimeTreeDistributions Status `/tmp/jl_zi9Prr/Project.toml` ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.122 [09f84164] HypothesisTests v0.11.6 ⌅ [c3a54625] JET v0.9.20 [be115224] MCMCDiagnosticTools v0.3.15 [6fafb56a] Memoization v0.2.2 [aea672f4] Phylo v0.5.4 [33ad39ac] PhyloNetworks v1.2.0 [276daf66] SpecialFunctions v2.6.1 [2913bbd2] StatsBase v0.34.7 [f3b207a7] StatsPlots v0.15.8 [1ed903b1] TractableTimeTreeDistributions v0.1.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_zi9Prr/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [7d9fca2a] Arpack v0.5.4 [15f4f7f2] AutoHashEquals v2.2.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [d360d2e6] ChainRulesCore v1.26.0 [aaaa29a8] Clustering v0.15.8 ⌅ [da1fd8a2] CodeTracking v1.3.9 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 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[29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Method definition _dummy_backedge() in module Memoization at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:49 overwritten at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:65. ERROR: LoadError: UndefVarError: `T` not defined in `SIMD` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/SIMD/UiGbs/src/arrayops.jl:4 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [3] top-level scope @ ~/.julia/packages/SIMD/UiGbs/src/SIMD.jl:25 [4] include(mod::Module, _path::String) @ Base ./Base.jl:309 [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [7] macro expansion @ ./loading.jl:2504 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [10] require @ ./loading.jl:2444 [inlined] [11] eval_import_path @ ./module.jl:36 [inlined] [12] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [13] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [14] top-level scope @ ~/.julia/packages/Automa/EyNRt/src/Automa.jl:4 [15] include(mod::Module, _path::String) @ Base ./Base.jl:309 [16] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [17] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [18] macro expansion @ ./loading.jl:2504 [inlined] [19] macro expansion @ ./lock.jl:376 [inlined] [20] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [21] require @ ./loading.jl:2444 [inlined] [22] eval_import_path @ ./module.jl:36 [inlined] [23] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [24] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [25] top-level scope @ ~/.julia/packages/FASTX/KGKFv/src/FASTX.jl:4 [26] include(mod::Module, _path::String) @ Base ./Base.jl:309 [27] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [28] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [29] macro expansion @ ./loading.jl:2504 [inlined] [30] macro expansion @ ./lock.jl:376 [inlined] [31] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [32] require @ ./loading.jl:2444 [inlined] [33] eval_import_path @ ./module.jl:36 [inlined] [34] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [35] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [36] top-level scope @ ~/.julia/packages/PhyloNetworks/7zhDI/src/PhyloNetworks.jl:25 [37] include(mod::Module, _path::String) @ Base ./Base.jl:309 [38] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [39] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [40] macro expansion @ ./loading.jl:2504 [inlined] [41] macro expansion @ ./lock.jl:376 [inlined] [42] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [43] require @ ./loading.jl:2444 [inlined] [44] eval_import_path @ ./module.jl:36 [inlined] [45] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [46] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [47] top-level scope @ ~/.julia/packages/TractableTimeTreeDistributions/wsaU9/src/utils/trees.jl:1 [48] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [49] top-level scope @ ~/.julia/packages/TractableTimeTreeDistributions/wsaU9/src/TractableTimeTreeDistributions.jl:9 [50] include(mod::Module, _path::String) @ Base ./Base.jl:309 [51] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [52] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [53] macro expansion @ ./loading.jl:2504 [inlined] [54] macro expansion @ ./lock.jl:376 [inlined] [55] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [56] require @ ./loading.jl:2444 [inlined] [57] eval_import_path @ ./module.jl:36 [inlined] [58] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [59] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [60] top-level scope @ ~/.julia/packages/TractableTimeTreeDistributions/wsaU9/test/runtests.jl:1 [61] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [62] top-level scope @ none:6 [63] eval(m::Module, e::Any) @ Core ./boot.jl:489 [64] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [65] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/arrayops.jl:4 in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/SIMD.jl:1 in expression starting at /home/pkgeval/.julia/packages/Automa/EyNRt/src/Automa.jl:1 in expression starting at /home/pkgeval/.julia/packages/FASTX/KGKFv/src/FASTX.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/7zhDI/src/PhyloNetworks.jl:3 in expression starting at /home/pkgeval/.julia/packages/TractableTimeTreeDistributions/wsaU9/src/utils/trees.jl:1 in expression starting at /home/pkgeval/.julia/packages/TractableTimeTreeDistributions/wsaU9/src/TractableTimeTreeDistributions.jl:1 in expression starting at /home/pkgeval/.julia/packages/TractableTimeTreeDistributions/wsaU9/test/runtests.jl:1 Testing failed after 299.5s ERROR: LoadError: Package TractableTimeTreeDistributions errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2936 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2785 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 603.59s: package tests unexpectedly errored