Package evaluation to test RCall on Julia 1.14.0-DEV.14 (ec5cf08762*) started at 2025-10-30T18:42:16.892 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.6s ################################################################################ # Installation # Installing RCall... Resolving package versions... Installed Conda ─ v1.10.3 Installed RCall ─ v0.14.9 Updating `~/.julia/environments/v1.14/Project.toml` [6f49c342] + RCall v0.14.9 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [324d7699] + CategoricalArrays v1.0.2 [34da2185] + Compat v4.18.1 [8f4d0f93] + Conda v1.10.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.2.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [43287f4e] + PtrArrays v1.3.0 [6f49c342] + RCall v0.14.9 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.1 [ec057cc2] + StructUtils v2.5.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [81def892] + VersionParsing v1.3.0 [1b915085] + WinReg v1.0.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building RCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/7521292e0ca900751cf0f35f2a2faf1cb321e960/build.log` Installation completed after 86.65s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 1568.1 ms ✓ SortingAlgorithms 5250.5 ms ✓ StatsFuns 5201.2 ms ✓ StatsBase 90090.1 ms ✓ DataFrames 3128.6 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 6344.7 ms ✓ StatsModels 6 dependencies successfully precompiled in 113 seconds. 76 already precompiled. Precompilation completed after 122.21s ################################################################################ # Testing # Testing RCall Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Installed IJulia ─ v1.31.1 Updating `/tmp/jl_CXsFwG/Project.toml` [39de3d68] + AxisArrays v0.4.8 [992eb4ea] + CondaPkg v0.2.33 [7073ff75] + IJulia v1.31.1 [6f49c342] + RCall v0.14.9 [98d24dd4] + TestSetExtensions v3.0.0 [44d3d7a6] + Weave v0.10.12 [44cfe95a] ~ Pkg ⇒ v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_CXsFwG/Manifest.toml` [39de3d68] + AxisArrays v0.4.8 [992eb4ea] + CondaPkg v0.2.33 [ab62b9b5] + DeepDiffs v1.2.0 [eafb193a] + Highlights v0.5.3 [7073ff75] + IJulia v1.31.1 [8197267c] + IntervalSets v0.7.11 [c8e1da08] + IterTools v1.10.0 ⌅ [682c06a0] ↓ JSON v1.2.0 ⇒ v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [0b3b1443] + MicroMamba v0.1.14 [ffc61752] + Mustache v1.0.21 [fa939f87] + Pidfile v1.3.0 [6f49c342] + RCall v0.14.9 [b3c3ace0] + RangeArrays v0.3.2 [05181044] + RelocatableFolders v1.0.1 [6c6a2e73] + Scratch v1.3.0 [69024149] + StringEncodings v0.3.7 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] - StructUtils v2.5.1 [98d24dd4] + TestSetExtensions v3.0.0 [44d3d7a6] + Weave v0.10.12 [ddb6d928] + YAML v0.4.14 [c2297ded] + ZMQ v1.5.0 [94ce4f54] + Libiconv_jll v1.18.0+0 [8f1865be] + ZeroMQ_jll v4.3.6+0 [a9144af2] + libsodium_jll v1.0.21+0 ⌅ [f8abcde7] + micromamba_jll v1.5.12+0 [4d7b5844] + pixi_jll v0.41.3+0 [8ba89e20] + Distributed v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [76f85450] + LibGit2 v1.11.0 [a63ad114] + Mmap v1.11.0 [44cfe95a] ~ Pkg ⇒ v1.13.0 [a4e569a6] + Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [e37daf67] + LibGit2_jll v1.9.1+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building IJulia → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/cdda5c1e16dace665ea5481460a3b6728f24a825/build.log` Test Successfully re-resolved Status `/tmp/jl_CXsFwG/Project.toml` [39de3d68] AxisArrays v0.4.8 [324d7699] CategoricalArrays v1.0.2 [8f4d0f93] Conda v1.10.3 [992eb4ea] CondaPkg v0.2.33 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [7073ff75] IJulia v1.31.1 [21216c6a] Preferences v1.5.0 [6f49c342] RCall v0.14.9 [3eaba693] StatsModels v0.7.7 [98d24dd4] TestSetExtensions v3.0.0 [44d3d7a6] Weave v0.10.12 [1b915085] WinReg v1.0.0 [ade2ca70] Dates v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_CXsFwG/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [39de3d68] AxisArrays v0.4.8 [324d7699] CategoricalArrays v1.0.2 [34da2185] Compat v4.18.1 [8f4d0f93] Conda v1.10.3 [992eb4ea] CondaPkg v0.2.33 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [eafb193a] Highlights v0.5.3 [34004b35] HypergeometricFunctions v0.3.28 [7073ff75] IJulia v1.31.1 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.11 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [ffc61752] Mustache v1.0.21 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.0 [43287f4e] PtrArrays v1.3.0 [6f49c342] RCall v0.14.9 [b3c3ace0] RangeArrays v0.3.2 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.7 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [98d24dd4] TestSetExtensions v3.0.0 [81def892] VersionParsing v1.3.0 [44d3d7a6] Weave v0.10.12 [1b915085] WinReg v1.0.0 [ddb6d928] YAML v0.4.14 [c2297ded] ZMQ v1.5.0 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [8f1865be] ZeroMQ_jll v4.3.6+0 [a9144af2] libsodium_jll v1.0.21+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ..... Test Summary: | Pass Total Time installation | 5 5 7.7s ┌ Info: └ R_PPSTACKTOP_INITIAL = 8589934592 ┌ Warning: RCall.jl: Warning: Your system is mis-configured: ‘/var/db/timezone/localtime’ is not a symlink │ Warning: ‘/var/db/timezone/localtime’ is not identical to any known timezone file └ @ RCall ~/.julia/packages/RCall/GLHIY/src/io.jl:171 RObject{VecSxp} R version 4.5.1 (2025-06-13) Platform: x86_64-conda-linux-gnu Running under: Debian GNU/Linux 12 (bookworm) Matrix products: default BLAS/LAPACK: /home/pkgeval/.julia/conda/3/x86_64/lib/libopenblasp-r0.3.30.so; LAPACK version 3.12.0 locale: [1] LC_CTYPE=C.UTF-8 LC_NUMERIC=C [3] LC_TIME=C.UTF-8 LC_COLLATE=C.UTF-8 [5] LC_MONETARY=C.UTF-8 LC_MESSAGES=C.UTF-8 [7] LC_PAPER=C.UTF-8 LC_NAME=C.UTF-8 [9] LC_ADDRESS=C.UTF-8 LC_TELEPHONE=C.UTF-8 [11] LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C.UTF-8 time zone: NA tzcode source: system (glibc) attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_4.5.1 RObject{VecSxp} $MBCS [1] TRUE $`UTF-8` [1] TRUE $`Latin-1` [1] FALSE $codeset [1] "UTF-8" ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................┌ Warning: RCall.jl: Loading required package: MASS │ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : │ there is no package called ‘MASS’ └ @ RCall ~/.julia/packages/RCall/GLHIY/src/io.jl:171 ┌ Info: └ has_mass_package = false ┌ Warning: RCall.jl: Loading required package: ape │ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : │ there is no package called ‘ape’ └ @ RCall ~/.julia/packages/RCall/GLHIY/src/io.jl:171 [ Info: installing ape to temporary lib sh: 1: wget: not found sh: 1: wget: not found sh: 1: wget: not found ┌ Warning: RCall.jl: Warning: unable to access index for repository https://cloud.r-project.org/src/contrib: │ 'wget' call had nonzero exit status │ Warning: package ‘ape’ is not available for this version of R │ │ A version of this package for your version of R might be available elsewhere, │ see the ideas at │ https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages └ @ RCall ~/.julia/packages/RCall/GLHIY/src/io.jl:171 ===================================================== namespaces: Error During Test at /home/pkgeval/.julia/packages/RCall/GLHIY/test/runtests.jl:71 Got exception outside of a @test LoadError: REvalError: Error in library("ape") : there is no package called ‘ape’ Stacktrace: [1] handle_eval_stderr(; as_warning::Bool) @ RCall ~/.julia/packages/RCall/GLHIY/src/io.jl:173 [2] handle_eval_stderr @ ~/.julia/packages/RCall/GLHIY/src/io.jl:167 [inlined] [3] reval_p(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/GLHIY/src/eval.jl:103 [4] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/GLHIY/src/eval.jl:119 [5] reval(str::String, env::RObject{EnvSxp}) @ RCall ~/.julia/packages/RCall/GLHIY/src/eval.jl:136 [6] reval(str::String) @ RCall ~/.julia/packages/RCall/GLHIY/src/eval.jl:136 [7] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/namespaces.jl:30 [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [9] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:72 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [11] macro expansion @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:72 [inlined] [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] macro expansion @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:71 [inlined] [14] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [15] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:48 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ none:6 [18] eval(m::Module, e::Any) @ Core ./boot.jl:489 [19] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [20] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/RCall/GLHIY/test/namespaces.jl:5 ===================================================== ===================================================== repl: Error During Test at /home/pkgeval/.julia/packages/RCall/GLHIY/test/runtests.jl:71 Got exception outside of a @test LoadError: UndefRefError: access to undefined reference Stacktrace: [1] getproperty @ ./Base_compiler.jl:57 [inlined] [2] repl_init(repl::LineEditREPL) @ RCall.RPrompt ~/.julia/packages/RCall/GLHIY/src/RPrompt.jl:228 [3] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/repl.jl:53 [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [5] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:72 [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [7] macro expansion @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:72 [inlined] [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] macro expansion @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:71 [inlined] [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [11] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:48 [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [16] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/RCall/GLHIY/test/repl.jl:53 ===================================================== [ Info: Installing 'julia 1.14.0-DEV' kernelspec in /home/pkgeval/.local/share/jupyter/kernels/julia-1.14 [ Info: Running `conda install -q -y jupyter` in root environment Channels: - r - defaults - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - jupyter The following packages will be downloaded: package | build ---------------------------|----------------- anyio-4.10.0 | py312h06a4308_0 287 KB argon2-cffi-21.3.0 | pyhd3eb1b0_0 15 KB argon2-cffi-bindings-25.1.0| py312hee96239_0 34 KB asttokens-3.0.0 | py312h06a4308_0 47 KB async-lru-2.0.5 | py312h06a4308_0 21 KB attrs-25.4.0 | py312h06a4308_0 171 KB babel-2.16.0 | py312h06a4308_0 6.9 MB beautifulsoup4-4.13.5 | py312h06a4308_0 251 KB bleach-6.2.0 | py312h06a4308_0 362 KB comm-0.2.1 | py312h06a4308_0 16 KB debugpy-1.8.16 | py312hbdd6827_0 2.6 MB decorator-5.2.1 | py312h06a4308_0 42 KB defusedxml-0.7.1 | pyhd3eb1b0_0 23 KB executing-2.2.1 | py312h06a4308_0 341 KB h11-0.16.0 | py312h06a4308_0 63 KB httpcore-1.0.9 | py312h06a4308_0 123 KB httpx-0.28.1 | py312h06a4308_1 210 KB ipykernel-6.30.1 | py312h06a4308_0 243 KB ipython-9.5.0 | py312h06a4308_0 1.1 MB ipython_pygments_lexers-1.1.1| py312h06a4308_0 17 KB ipywidgets-8.1.7 | py312h06a4308_0 238 KB jedi-0.19.2 | py312h06a4308_0 1.2 MB jinja2-3.1.6 | py312h06a4308_0 352 KB json5-0.9.25 | py312h06a4308_0 53 KB jsonschema-4.25.0 | py312h06a4308_0 200 KB jsonschema-specifications-2023.7.1| py312h06a4308_0 15 KB jupyter-1.1.1 | py312h06a4308_0 8 KB jupyter-lsp-2.2.5 | py312h06a4308_0 114 KB jupyter_client-8.6.3 | py312h06a4308_0 231 KB jupyter_console-6.6.3 | py312h06a4308_1 52 KB jupyter_core-5.8.1 | py312h06a4308_0 95 KB jupyter_events-0.12.0 | py312h06a4308_0 42 KB jupyter_server-2.16.0 | py312h06a4308_0 596 KB jupyter_server_terminals-0.5.3| py312h06a4308_0 28 KB jupyterlab-4.4.7 | py312h06a4308_0 8.2 MB jupyterlab_pygments-0.3.0 | py312h06a4308_0 18 KB jupyterlab_server-2.28.0 | py312h06a4308_0 117 KB jupyterlab_widgets-3.0.15 | py312h06a4308_0 198 KB libsodium-1.0.20 | heac8642_0 288 KB markupsafe-3.0.2 | py312h5eee18b_0 26 KB matplotlib-inline-0.1.7 | py312h06a4308_0 19 KB mistune-3.1.2 | py312h06a4308_0 145 KB nbclient-0.10.2 | py312h06a4308_0 53 KB nbconvert-7.16.6 | py312h06a4308_0 7 KB nbconvert-core-7.16.6 | py312h06a4308_0 510 KB nbconvert-pandoc-7.16.6 | py312h06a4308_0 7 KB nbformat-5.10.4 | py312h06a4308_0 157 KB nest-asyncio-1.6.0 | py312h06a4308_0 16 KB notebook-7.4.5 | py312h06a4308_0 5.9 MB notebook-shim-0.2.4 | py312h06a4308_0 26 KB overrides-7.4.0 | py312h06a4308_0 36 KB pandoc-3.8 | h06a4308_0 20.9 MB pandocfilters-1.5.1 | py312h06a4308_0 17 KB parso-0.8.4 | py312h06a4308_0 233 KB pexpect-4.9.0 | py312h06a4308_0 157 KB prometheus_client-0.21.1 | py312h06a4308_0 151 KB prompt-toolkit-3.0.52 | py312h06a4308_1 699 KB prompt_toolkit-3.0.52 | hd3eb1b0_1 5 KB psutil-7.0.0 | py312hee96239_0 531 KB ptyprocess-0.7.0 | pyhd3eb1b0_2 17 KB pure_eval-0.2.3 | py312h06a4308_0 33 KB pygments-2.19.1 | py312h06a4308_0 2.2 MB python-dateutil-2.9.0post0 | py312h06a4308_2 318 KB python-fastjsonschema-2.20.0| py312h06a4308_0 260 KB python-json-logger-3.2.1 | py312h06a4308_0 27 KB pyyaml-6.0.2 | py312h5eee18b_0 217 KB pyzmq-27.1.0 | py312hcf8288c_0 369 KB qtconsole-5.7.0 | py312h06a4308_0 253 KB qtpy-2.4.3 | py312h06a4308_0 127 KB referencing-0.30.2 | py312h06a4308_0 73 KB rfc3339-validator-0.1.4 | py312h06a4308_0 9 KB rfc3986-validator-0.1.1 | py312h06a4308_0 9 KB rpds-py-0.22.3 | py312h4aa5aa6_0 371 KB send2trash-1.8.2 | py312h06a4308_1 31 KB six-1.17.0 | py312h06a4308_0 36 KB sniffio-1.3.0 | py312h06a4308_0 16 KB soupsieve-2.5 | py312h06a4308_0 84 KB stack_data-0.6.3 | py312h06a4308_0 65 KB terminado-0.18.1 | py312h06a4308_0 32 KB tinycss2-1.4.0 | py312h06a4308_0 109 KB tornado-6.5.1 | py312h5eee18b_0 875 KB traitlets-5.14.3 | py312h06a4308_0 219 KB typing-extensions-4.15.0 | py312h06a4308_0 11 KB typing_extensions-4.15.0 | py312h06a4308_0 99 KB wcwidth-0.2.13 | py312h06a4308_0 73 KB webencodings-0.5.1 | py312h06a4308_2 25 KB websocket-client-1.8.0 | py312h06a4308_0 116 KB widgetsnbextension-4.0.14 | py312h06a4308_0 865 KB yaml-0.2.5 | h7b6447c_0 75 KB zeromq-4.3.5 | hb0a5e54_1 332 KB ------------------------------------------------------------ Total: 61.6 MB The following NEW packages will be INSTALLED: anyio pkgs/main/linux-64::anyio-4.10.0-py312h06a4308_0 argon2-cffi pkgs/main/noarch::argon2-cffi-21.3.0-pyhd3eb1b0_0 argon2-cffi-bindi~ pkgs/main/linux-64::argon2-cffi-bindings-25.1.0-py312hee96239_0 asttokens pkgs/main/linux-64::asttokens-3.0.0-py312h06a4308_0 async-lru pkgs/main/linux-64::async-lru-2.0.5-py312h06a4308_0 attrs pkgs/main/linux-64::attrs-25.4.0-py312h06a4308_0 babel pkgs/main/linux-64::babel-2.16.0-py312h06a4308_0 beautifulsoup4 pkgs/main/linux-64::beautifulsoup4-4.13.5-py312h06a4308_0 bleach pkgs/main/linux-64::bleach-6.2.0-py312h06a4308_0 comm pkgs/main/linux-64::comm-0.2.1-py312h06a4308_0 debugpy pkgs/main/linux-64::debugpy-1.8.16-py312hbdd6827_0 decorator pkgs/main/linux-64::decorator-5.2.1-py312h06a4308_0 defusedxml pkgs/main/noarch::defusedxml-0.7.1-pyhd3eb1b0_0 executing pkgs/main/linux-64::executing-2.2.1-py312h06a4308_0 h11 pkgs/main/linux-64::h11-0.16.0-py312h06a4308_0 httpcore pkgs/main/linux-64::httpcore-1.0.9-py312h06a4308_0 httpx pkgs/main/linux-64::httpx-0.28.1-py312h06a4308_1 ipykernel pkgs/main/linux-64::ipykernel-6.30.1-py312h06a4308_0 ipython pkgs/main/linux-64::ipython-9.5.0-py312h06a4308_0 ipython_pygments_~ pkgs/main/linux-64::ipython_pygments_lexers-1.1.1-py312h06a4308_0 ipywidgets pkgs/main/linux-64::ipywidgets-8.1.7-py312h06a4308_0 jedi pkgs/main/linux-64::jedi-0.19.2-py312h06a4308_0 jinja2 pkgs/main/linux-64::jinja2-3.1.6-py312h06a4308_0 json5 pkgs/main/linux-64::json5-0.9.25-py312h06a4308_0 jsonschema pkgs/main/linux-64::jsonschema-4.25.0-py312h06a4308_0 jsonschema-specif~ pkgs/main/linux-64::jsonschema-specifications-2023.7.1-py312h06a4308_0 jupyter pkgs/main/linux-64::jupyter-1.1.1-py312h06a4308_0 jupyter-lsp pkgs/main/linux-64::jupyter-lsp-2.2.5-py312h06a4308_0 jupyter_client pkgs/main/linux-64::jupyter_client-8.6.3-py312h06a4308_0 jupyter_console pkgs/main/linux-64::jupyter_console-6.6.3-py312h06a4308_1 jupyter_core pkgs/main/linux-64::jupyter_core-5.8.1-py312h06a4308_0 jupyter_events pkgs/main/linux-64::jupyter_events-0.12.0-py312h06a4308_0 jupyter_server pkgs/main/linux-64::jupyter_server-2.16.0-py312h06a4308_0 jupyter_server_te~ pkgs/main/linux-64::jupyter_server_terminals-0.5.3-py312h06a4308_0 jupyterlab pkgs/main/linux-64::jupyterlab-4.4.7-py312h06a4308_0 jupyterlab_pygmen~ pkgs/main/linux-64::jupyterlab_pygments-0.3.0-py312h06a4308_0 jupyterlab_server pkgs/main/linux-64::jupyterlab_server-2.28.0-py312h06a4308_0 jupyterlab_widgets pkgs/main/linux-64::jupyterlab_widgets-3.0.15-py312h06a4308_0 libsodium pkgs/main/linux-64::libsodium-1.0.20-heac8642_0 markupsafe pkgs/main/linux-64::markupsafe-3.0.2-py312h5eee18b_0 matplotlib-inline pkgs/main/linux-64::matplotlib-inline-0.1.7-py312h06a4308_0 mistune pkgs/main/linux-64::mistune-3.1.2-py312h06a4308_0 nbclient pkgs/main/linux-64::nbclient-0.10.2-py312h06a4308_0 nbconvert pkgs/main/linux-64::nbconvert-7.16.6-py312h06a4308_0 nbconvert-core pkgs/main/linux-64::nbconvert-core-7.16.6-py312h06a4308_0 nbconvert-pandoc pkgs/main/linux-64::nbconvert-pandoc-7.16.6-py312h06a4308_0 nbformat pkgs/main/linux-64::nbformat-5.10.4-py312h06a4308_0 nest-asyncio pkgs/main/linux-64::nest-asyncio-1.6.0-py312h06a4308_0 notebook pkgs/main/linux-64::notebook-7.4.5-py312h06a4308_0 notebook-shim pkgs/main/linux-64::notebook-shim-0.2.4-py312h06a4308_0 overrides pkgs/main/linux-64::overrides-7.4.0-py312h06a4308_0 pandoc pkgs/main/linux-64::pandoc-3.8-h06a4308_0 pandocfilters pkgs/main/linux-64::pandocfilters-1.5.1-py312h06a4308_0 parso pkgs/main/linux-64::parso-0.8.4-py312h06a4308_0 pexpect pkgs/main/linux-64::pexpect-4.9.0-py312h06a4308_0 prometheus_client pkgs/main/linux-64::prometheus_client-0.21.1-py312h06a4308_0 prompt-toolkit pkgs/main/linux-64::prompt-toolkit-3.0.52-py312h06a4308_1 prompt_toolkit pkgs/main/noarch::prompt_toolkit-3.0.52-hd3eb1b0_1 psutil pkgs/main/linux-64::psutil-7.0.0-py312hee96239_0 ptyprocess pkgs/main/noarch::ptyprocess-0.7.0-pyhd3eb1b0_2 pure_eval pkgs/main/linux-64::pure_eval-0.2.3-py312h06a4308_0 pygments pkgs/main/linux-64::pygments-2.19.1-py312h06a4308_0 python-dateutil pkgs/main/linux-64::python-dateutil-2.9.0post0-py312h06a4308_2 python-fastjsonsc~ pkgs/main/linux-64::python-fastjsonschema-2.20.0-py312h06a4308_0 python-json-logger pkgs/main/linux-64::python-json-logger-3.2.1-py312h06a4308_0 pyyaml pkgs/main/linux-64::pyyaml-6.0.2-py312h5eee18b_0 pyzmq pkgs/main/linux-64::pyzmq-27.1.0-py312hcf8288c_0 qtconsole pkgs/main/linux-64::qtconsole-5.7.0-py312h06a4308_0 qtpy pkgs/main/linux-64::qtpy-2.4.3-py312h06a4308_0 referencing pkgs/main/linux-64::referencing-0.30.2-py312h06a4308_0 rfc3339-validator pkgs/main/linux-64::rfc3339-validator-0.1.4-py312h06a4308_0 rfc3986-validator pkgs/main/linux-64::rfc3986-validator-0.1.1-py312h06a4308_0 rpds-py pkgs/main/linux-64::rpds-py-0.22.3-py312h4aa5aa6_0 send2trash pkgs/main/linux-64::send2trash-1.8.2-py312h06a4308_1 six pkgs/main/linux-64::six-1.17.0-py312h06a4308_0 sniffio pkgs/main/linux-64::sniffio-1.3.0-py312h06a4308_0 soupsieve pkgs/main/linux-64::soupsieve-2.5-py312h06a4308_0 stack_data pkgs/main/linux-64::stack_data-0.6.3-py312h06a4308_0 terminado pkgs/main/linux-64::terminado-0.18.1-py312h06a4308_0 tinycss2 pkgs/main/linux-64::tinycss2-1.4.0-py312h06a4308_0 tornado pkgs/main/linux-64::tornado-6.5.1-py312h5eee18b_0 traitlets pkgs/main/linux-64::traitlets-5.14.3-py312h06a4308_0 typing-extensions pkgs/main/linux-64::typing-extensions-4.15.0-py312h06a4308_0 typing_extensions pkgs/main/linux-64::typing_extensions-4.15.0-py312h06a4308_0 wcwidth pkgs/main/linux-64::wcwidth-0.2.13-py312h06a4308_0 webencodings pkgs/main/linux-64::webencodings-0.5.1-py312h06a4308_2 websocket-client pkgs/main/linux-64::websocket-client-1.8.0-py312h06a4308_0 widgetsnbextension pkgs/main/linux-64::widgetsnbextension-4.0.14-py312h06a4308_0 yaml pkgs/main/linux-64::yaml-0.2.5-h7b6447c_0 zeromq pkgs/main/linux-64::zeromq-4.3.5-hb0a5e54_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ Info: Running nbconvert ... [NbConvertApp] WARNING | pattern '' matched no files [NbConvertApp] Converting notebook /home/pkgeval/.julia/packages/RCall/GLHIY/test/ijulia.ipynb to notebook [ Info: Precompiling IJulia [7073ff75-c697-5162-941a-fcdaad2a7d2a] (cache misses: mismatched flags (2), dep missing source (1)) Precompiling packages... 54953.8 ms ✓ IJulia (serial) 1 dependency successfully precompiled in 55 seconds Traceback (most recent call last): File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/jupyter_core/utils/__init__.py", line 154, in wrapped asyncio.get_running_loop() RuntimeError: no running event loop During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/pkgeval/.julia/conda/3/x86_64/bin/jupyter-nbconvert", line 11, in sys.exit(main()) ^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/jupyter_core/application.py", line 284, in launch_instance super().launch_instance(argv=argv, **kwargs) File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/traitlets/config/application.py", line 1075, in launch_instance app.start() File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 420, in start self.convert_notebooks() File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 597, in convert_notebooks self.convert_single_notebook(notebook_filename) File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 563, in convert_single_notebook output, resources = self.export_single_notebook( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/nbconvertapp.py", line 487, in export_single_notebook output, resources = self.exporter.from_filename( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 201, in from_filename return self.from_file(f, resources=resources, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 220, in from_file return self.from_notebook_node( ^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/notebook.py", line 36, in from_notebook_node nb_copy, resources = super().from_notebook_node(nb, resources, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 154, in from_notebook_node nb_copy, resources = self._preprocess(nb_copy, resources) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/exporters/exporter.py", line 353, in _preprocess nbc, resc = preprocessor(nbc, resc) ^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/preprocessors/base.py", line 48, in __call__ return self.preprocess(nb, resources) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/preprocessors/execute.py", line 103, in preprocess self.preprocess_cell(cell, resources, index) File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbconvert/preprocessors/execute.py", line 124, in preprocess_cell cell = self.execute_cell(cell, index, store_history=True) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/jupyter_core/utils/__init__.py", line 158, in wrapped return loop.run_until_complete(inner) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/asyncio/base_events.py", line 691, in run_until_complete return future.result() ^^^^^^^^^^^^^^^ File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbclient/client.py", line 1062, in async_execute_cell await self._check_raise_for_error(cell, cell_index, exec_reply) File "/home/pkgeval/.julia/conda/3/x86_64/lib/python3.12/site-packages/nbclient/client.py", line 918, in _check_raise_for_error raise CellExecutionError.from_cell_and_msg(cell, exec_reply_content) nbclient.exceptions.CellExecutionError: An error occurred while executing the following cell: ------------------ using RCall RCall.ijulia_init() R"plot(1:10, 1:10)" ------------------ ----- stderr ----- [ Info: Precompiling RCall [6f49c342-dc21-5d91-9882-a32aef131414] ----- stderr ----- ┌ Info: Skipping precompilation due to precompilable error. Importing RCall [6f49c342-dc21-5d91-9882-a32aef131414]. └  exception = Error when precompiling module, potentially caused by a __precompile__(false) declaration in the module. ------------------ LoadError: ArgumentError: Package CategoricalArrays [324d7699-5711-5eae-9e2f-1d82baa6b597] is required but does not seem to be installed: - Run `Pkg.instantiate()` to install all recorded dependencies. in expression starting at /home/pkgeval/.julia/packages/RCall/GLHIY/src/RCall.jl:1 Stacktrace: [1] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2698 [2] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2576 [3] macro expansion  @ ./loading.jl:2504 [inlined] [4] macro expansion  @ ./lock.jl:376 [inlined] [5] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2468 [6] require  @ ./loading.jl:2444 [inlined] [7] eval_import_path  @ ./module.jl:36 [inlined] [8] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60 [9] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137 [10] top-level scope  @ ~/.julia/packages/RCall/GLHIY/src/RCall.jl:8 [11] include(mod::Module, _path::String)  @ Base ./Base.jl:309 [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2817 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2576 [14] macro expansion  @ ./loading.jl:2504 [inlined] [15] macro expansion  @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2468 [17] require  @ ./loading.jl:2444 [inlined] [18] eval_import_path  @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137 [21] top-level scope  @ In[1]:1 [22] eval(m::Module, e::Any)  @ Core ./boot.jl:489 ===================================================== IJulia: Error During Test at /home/pkgeval/.julia/packages/RCall/GLHIY/test/runtests.jl:80 Got exception outside of a @test LoadError: failed process: Process(`/home/pkgeval/.julia/conda/3/x86_64/bin/jupyter nbconvert --ExecutePreprocessor.timeout=-1 --to notebook --execute /home/pkgeval/.julia/packages/RCall/GLHIY/test/ijulia.ipynb '' --output /home/pkgeval/.julia/packages/RCall/GLHIY/test/ijulia.ipynb`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] read(cmd::Cmd) @ Base ./process.jl:491 [3] read @ ./process.jl:500 [inlined] [4] notebook(source::String; out_path::String, timeout::Int64, nbconvert_options::String, jupyter_path::String) @ Weave ~/.julia/packages/Weave/f7Ly3/src/Weave.jl:296 [5] kwcall(::@NamedTuple{out_path::String, jupyter_path::String}, ::typeof(Weave.notebook), source::String) @ Weave ~/.julia/packages/Weave/f7Ly3/src/Weave.jl:281 [6] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/ijulia.jl:14 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [8] macro expansion @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:81 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [10] macro expansion @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:81 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [12] top-level scope @ ~/.julia/packages/RCall/GLHIY/test/runtests.jl:48 [13] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [14] top-level scope @ none:6 [15] eval(m::Module, e::Any) @ Core ./boot.jl:489 [16] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [17] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/RCall/GLHIY/test/ijulia.jl:14 ===================================================== ┌ Info: └ RCall.conda_provided_r = true . Test Summary: | Pass Error Total Time RCall | 459 3 462 3m56.9s basic | 64 64 20.0s convert/base | 192 192 15.1s convert/missing | 28 28 2.0s convert/datetime | 86 86 5.0s convert/dataframe | 11 11 4.0s convert/categorical | 22 22 3.5s convert/formula | 16 16 9.5s convert/namedtuple | 10 10 1.6s convert/tuple | 11 11 0.4s macros | 17 17 1.1s namespaces | 1 1 4.1s repl | 1 1 40.3s IJulia | 1 1 2m09.9s ERROR: LoadError: Some tests did not pass: 459 passed, 0 failed, 3 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RCall/GLHIY/test/runtests.jl:45 Testing failed after 293.08s ERROR: LoadError: Package RCall errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2936 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2785 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 549.64s: package tests unexpectedly errored