Package evaluation to test PhyloDiamond on Julia 1.14.0-DEV.14 (ec5cf08762*) started at 2025-10-30T22:26:57.245


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 10.28s


################################################################################
# Installation
#

Installing PhyloDiamond...
   Resolving package versions...
   Installed DiffResults ───────────────── v1.1.0
   Installed Rmath_jll ─────────────────── v0.5.1+0
   Installed MacroTools ────────────────── v0.5.16
   Installed FilePathsBase ─────────────── v0.9.24
   Installed ForwardDiff ───────────────── v1.2.2
   Installed RCall ─────────────────────── v0.13.18
   Installed DataStructures ────────────── v0.18.22
   Installed GLM ───────────────────────── v1.8.3
   Installed Bzip2_jll ─────────────────── v1.0.9+0
   Installed VersionParsing ────────────── v1.3.0
   Installed FillArrays ────────────────── v1.14.0
   Installed InlineStrings ─────────────── v1.4.5
   Installed StringViews ───────────────── v1.3.5
   Installed DelimitedFiles ────────────── v1.9.1
   Installed HypergeometricFunctions ───── v0.3.28
   Installed StatsModels ───────────────── v0.6.33
   Installed AliasTables ───────────────── v1.1.3
   Installed StatsBase ─────────────────── v0.33.21
   Installed Functors ──────────────────── v0.3.0
   Installed CodecZlib ─────────────────── v0.7.8
   Installed ShiftedArrays ─────────────── v2.0.0
   Installed TranscodingStreams ────────── v0.11.3
   Installed OrderedCollections ────────── v1.8.1
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed Compat ────────────────────── v4.18.1
   Installed Combinatorics ─────────────── v1.0.3
   Installed SIMD ──────────────────────── v3.7.2
   Installed DataAPI ───────────────────── v1.16.0
   Installed Statistics ────────────────── v1.11.1
   Installed InvertedIndices ───────────── v1.3.1
   Installed StatsAPI ──────────────────── v1.7.1
   Installed DataValueInterfaces ───────── v1.0.0
   Installed PrecompileTools ───────────── v1.3.3
   Installed Conda ─────────────────────── v1.10.3
   Installed PhyloPlots ────────────────── v1.0.0
   Installed Documenter ────────────────── v0.27.25
   Installed CommonSubexpressions ──────── v0.3.1
   Installed StaticArraysCore ──────────── v1.4.4
   Installed SentinelArrays ────────────── v1.4.8
   Installed Twiddle ───────────────────── v1.1.2
   Installed BioSymbols ────────────────── v5.2.0
   Installed StaticArrays ──────────────── v1.9.15
   Installed WinReg ────────────────────── v1.0.0
   Installed IrrationalConstants ───────── v0.2.6
   Installed CodecBzip2 ────────────────── v0.8.5
   Installed QuadGK ────────────────────── v2.11.2
   Installed StringManipulation ────────── v0.4.1
   Installed NaNMath ───────────────────── v1.1.3
   Installed Requires ──────────────────── v1.3.1
   Installed OpenSpecFun_jll ───────────── v0.5.6+0
   Installed JSON3 ─────────────────────── v1.14.3
   Installed LogExpFunctions ───────────── v0.3.29
   Installed DiffRules ─────────────────── v1.15.1
   Installed JSON ──────────────────────── v0.21.4
   Installed Parsers ───────────────────── v2.8.3
   Installed PrettyTables ──────────────── v3.1.0
   Installed Rmath ─────────────────────── v0.9.0
   Installed BioGenerics ───────────────── v0.1.5
   Installed IOCapture ─────────────────── v0.2.5
   Installed StatsFuns ─────────────────── v1.5.2
   Installed Tables ────────────────────── v1.12.1
   Installed Distributions ─────────────── v0.25.122
   Installed PtrArrays ─────────────────── v1.3.0
   Installed PhyloNetworks ─────────────── v0.15.3
   Installed FASTX ─────────────────────── v2.1.7
   Installed Reexport ──────────────────── v1.2.2
   Installed SpecialFunctions ──────────── v2.6.1
   Installed DataFrames ────────────────── v1.8.1
   Installed MutableArithmetics ────────── v1.6.7
   Installed Missings ──────────────────── v1.2.0
   Installed WeakRefStrings ────────────── v1.4.2
   Installed Preferences ───────────────── v1.5.0
   Installed PooledArrays ──────────────── v1.4.3
   Installed BenchmarkTools ────────────── v1.6.3
   Installed TableTraits ───────────────── v1.0.1
   Installed JLLWrappers ───────────────── v1.7.1
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed StructTypes ───────────────── v1.11.0
   Installed SortingAlgorithms ─────────── v1.2.2
   Installed Automa ────────────────────── v1.1.0
   Installed PDMats ────────────────────── v0.11.35
   Installed Crayons ───────────────────── v4.1.1
   Installed NLopt ─────────────────────── v0.6.5
   Installed WorkerUtilities ───────────── v1.6.1
   Installed MathProgBase ──────────────── v0.7.8
   Installed CategoricalArrays ─────────── v0.10.8
   Installed DocStringExtensions ───────── v0.9.5
   Installed BioSequences ──────────────── v3.5.0
   Installed NLopt_jll ─────────────────── v2.10.0+0
   Installed Example ───────────────────── v0.5.5
   Installed ANSIColoredPrinters ───────── v0.0.1
   Installed MathOptInterface ──────────── v1.46.0
   Installed CSV ───────────────────────── v0.10.15
   Installed PhyloDiamond ──────────────── v0.1.0
  Installing 4 artifacts
   Installed artifact Rmath       121.9 KiB
   Installed artifact OpenSpecFun 194.9 KiB
   Installed artifact NLopt       322.7 KiB
   Installed artifact Bzip2       503.5 KiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [5fd89c64] + PhyloDiamond v0.1.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [a4c015fc] + ANSIColoredPrinters v0.0.1
  [66dad0bd] + AliasTables v1.1.3
  [67c07d97] + Automa v1.1.0
  [6e4b80f9] + BenchmarkTools v1.6.3
  [47718e42] + BioGenerics v0.1.5
  [7e6ae17a] + BioSequences v3.5.0
  [3c28c6f8] + BioSymbols v5.2.0
  [336ed68f] + CSV v0.10.15
⌅ [324d7699] + CategoricalArrays v0.10.8
  [523fee87] + CodecBzip2 v0.8.5
  [944b1d66] + CodecZlib v0.7.8
  [861a8166] + Combinatorics v1.0.3
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [8f4d0f93] + Conda v1.10.3
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.1
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
⌅ [e30172f5] + Documenter v0.27.25
  [7876af07] + Example v0.5.5
  [c2308a5c] + FASTX v2.1.7
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.14.0
  [f6369f11] + ForwardDiff v1.2.2
⌅ [d9f16b24] + Functors v0.3.0
⌃ [38e38edf] + GLM v1.8.3
  [34004b35] + HypergeometricFunctions v0.3.28
⌅ [b5f81e59] + IOCapture v0.2.5
  [842dd82b] + InlineStrings v1.4.5
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.6
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
⌅ [682c06a0] + JSON v0.21.4
  [0f8b85d8] + JSON3 v1.14.3
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [1914dd2f] + MacroTools v0.5.16
  [b8f27783] + MathOptInterface v1.46.0
  [fdba3010] + MathProgBase v0.7.8
  [e1d29d7a] + Missings v1.2.0
  [d8a4904e] + MutableArithmetics v1.6.7
⌅ [76087f3c] + NLopt v0.6.5
  [77ba4419] + NaNMath v1.1.3
  [bac558e1] + OrderedCollections v1.8.1
⌃ [90014a1f] + PDMats v0.11.35
  [69de0a69] + Parsers v2.8.3
  [5fd89c64] + PhyloDiamond v0.1.0
⌅ [33ad39ac] + PhyloNetworks v0.15.3
⌅ [c0d5b6db] + PhyloPlots v1.0.0
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [08abe8d2] + PrettyTables v3.1.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
⌅ [6f49c342] + RCall v0.13.18
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.9.0
  [fdea26ae] + SIMD v3.7.2
  [91c51154] + SentinelArrays v1.4.8
  [1277b4bf] + ShiftedArrays v2.0.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
⌅ [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.5.2
⌅ [3eaba693] + StatsModels v0.6.33
  [892a3eda] + StringManipulation v0.4.1
  [354b36f9] + StringViews v1.3.5
  [856f2bd8] + StructTypes v1.11.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [3bb67fe8] + TranscodingStreams v0.11.3
  [7200193e] + Twiddle v1.1.2
  [81def892] + VersionParsing v1.3.0
  [ea10d353] + WeakRefStrings v1.4.2
  [1b915085] + WinReg v1.0.0
  [76eceee3] + WorkerUtilities v1.6.1
  [6e34b625] + Bzip2_jll v1.0.9+0
  [079eb43e] + NLopt_jll v2.10.0+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [de0858da] + Printf v1.11.0
  [9abbd945] + Profile v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.9.9
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.67.1+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
    Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log`
    Building RCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/3084689b18f9e5e817a6ce9a83a7654d8ad0f2f6/build.log`

Installation completed after 143.77s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   4545.2 ms  ✓ TestEnv
  1 dependency successfully precompiled in 5 seconds. 27 already precompiled.
  1 dependency had output during precompilation:
┌ TestEnv
│  WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv.
└  

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   1936.7 ms  ✓ Crayons
   4488.4 ms  ✓ MacroTools
   1742.3 ms  ✓ InlineStrings
   1048.6 ms  ✓ ANSIColoredPrinters
    772.7 ms  ✓ Reexport
   1113.8 ms  ✓ Statistics
    898.3 ms  ✓ DataAPI
   2191.2 ms  ✓ IrrationalConstants
    773.3 ms  ✓ DataValueInterfaces
    992.5 ms  ✓ StaticArraysCore
    846.0 ms  ✓ StatsAPI
   1168.4 ms  ✓ Requires
   1238.9 ms  ✓ OrderedCollections
    863.8 ms  ✓ InvertedIndices
    850.0 ms  ✓ Twiddle
   1145.0 ms  ✓ DocStringExtensions
    862.9 ms  ✓ ShiftedArrays
    913.7 ms  ✓ VersionParsing
    861.1 ms  ✓ WinReg
    955.6 ms  ✓ Functors
   2042.9 ms  ✓ Combinatorics
   1075.1 ms  ✓ StringViews
   1007.4 ms  ✓ WorkerUtilities
    775.4 ms  ✓ Example
   2166.7 ms  ✓ FillArrays
    812.2 ms  ✓ PtrArrays
   1296.8 ms  ✓ TranscodingStreams
   2172.6 ms  ✓ MathProgBase
    753.3 ms  ✓ IteratorInterfaceExtensions
    851.1 ms  ✓ LaTeXStrings
   1241.7 ms  ✓ SuiteSparse
    888.6 ms  ✓ IOCapture
   1032.8 ms  ✓ NaNMath
    974.5 ms  ✓ DelimitedFiles
   2856.3 ms  ✓ SentinelArrays
   1653.4 ms  ✓ StructTypes
   1190.2 ms  ✓ Compat
   1308.6 ms  ✓ Preferences
  11953.4 ms  ✓ MutableArithmetics
   1838.7 ms  ✓ CommonSubexpressions
   1534.7 ms  ✓ Statistics → SparseArraysExt
    995.0 ms  ✓ Missings
   1027.5 ms  ✓ PooledArrays
    883.9 ms  ✓ DiffResults
   1447.2 ms  ✓ LogExpFunctions
   1562.2 ms  ✓ FillArrays → FillArraysSparseArraysExt
    978.1 ms  ✓ FillArrays → FillArraysStatisticsExt
   1013.1 ms  ✓ AliasTables
   1024.0 ms  ✓ BioGenerics
    978.9 ms  ✓ CodecZlib
    793.8 ms  ✓ TableTraits
   1875.5 ms  ✓ PDMats
    891.1 ms  ✓ Compat → CompatLinearAlgebraExt
   1265.3 ms  ✓ JLLWrappers
    930.8 ms  ✓ PrecompileTools
   7433.1 ms  ✓ CategoricalArrays
   1840.3 ms  ✓ Tables
   1463.8 ms  ✓ FillArrays → FillArraysPDMatsExt
   2194.3 ms  ✓ FilePathsBase
   3881.4 ms  ✓ DataStructures
   1460.2 ms  ✓ Bzip2_jll
   1415.6 ms  ✓ NLopt_jll
   1477.6 ms  ✓ Rmath_jll
   1876.4 ms  ✓ OpenSpecFun_jll
   2647.7 ms  ✓ BioSymbols
  14353.0 ms  ✓ StaticArrays
   3263.1 ms  ✓ StringManipulation


Precompilation completed after 157.66s


################################################################################
# Testing
#

     Testing PhyloDiamond
      Status `/tmp/jl_DWNGTF/Project.toml`
  [336ed68f] CSV v0.10.15
  [861a8166] Combinatorics v1.0.3
  [a93c6f00] DataFrames v1.8.1
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.122
⌅ [e30172f5] Documenter v0.27.25
  [7876af07] Example v0.5.5
  [5fd89c64] PhyloDiamond v0.1.0
⌅ [33ad39ac] PhyloNetworks v0.15.3
⌅ [c0d5b6db] PhyloPlots v1.0.0
  [10745b16] Statistics v1.11.1
⌅ [2913bbd2] StatsBase v0.33.21
  [37e2e46d] LinearAlgebra v1.13.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_DWNGTF/Manifest.toml`
  [a4c015fc] ANSIColoredPrinters v0.0.1
  [66dad0bd] AliasTables v1.1.3
  [67c07d97] Automa v1.1.0
  [6e4b80f9] BenchmarkTools v1.6.3
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.5.0
  [3c28c6f8] BioSymbols v5.2.0
  [336ed68f] CSV v0.10.15
⌅ [324d7699] CategoricalArrays v0.10.8
  [523fee87] CodecBzip2 v0.8.5
  [944b1d66] CodecZlib v0.7.8
  [861a8166] Combinatorics v1.0.3
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.1
  [8f4d0f93] Conda v1.10.3
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.8.1
⌅ [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [31c24e10] Distributions v0.25.122
  [ffbed154] DocStringExtensions v0.9.5
⌅ [e30172f5] Documenter v0.27.25
  [7876af07] Example v0.5.5
  [c2308a5c] FASTX v2.1.7
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.14.0
  [f6369f11] ForwardDiff v1.2.2
⌅ [d9f16b24] Functors v0.3.0
⌃ [38e38edf] GLM v1.8.3
  [34004b35] HypergeometricFunctions v0.3.28
⌅ [b5f81e59] IOCapture v0.2.5
  [842dd82b] InlineStrings v1.4.5
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.6
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.1
⌅ [682c06a0] JSON v0.21.4
  [0f8b85d8] JSON3 v1.14.3
  [b964fa9f] LaTeXStrings v1.4.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [1914dd2f] MacroTools v0.5.16
  [b8f27783] MathOptInterface v1.46.0
  [fdba3010] MathProgBase v0.7.8
  [e1d29d7a] Missings v1.2.0
  [d8a4904e] MutableArithmetics v1.6.7
⌅ [76087f3c] NLopt v0.6.5
  [77ba4419] NaNMath v1.1.3
  [bac558e1] OrderedCollections v1.8.1
⌃ [90014a1f] PDMats v0.11.35
  [69de0a69] Parsers v2.8.3
  [5fd89c64] PhyloDiamond v0.1.0
⌅ [33ad39ac] PhyloNetworks v0.15.3
⌅ [c0d5b6db] PhyloPlots v1.0.0
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [08abe8d2] PrettyTables v3.1.0
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
⌅ [6f49c342] RCall v0.13.18
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.9.0
  [fdea26ae] SIMD v3.7.2
  [91c51154] SentinelArrays v1.4.8
  [1277b4bf] ShiftedArrays v2.0.0
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.6.1
  [90137ffa] StaticArrays v1.9.15
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
⌅ [2913bbd2] StatsBase v0.33.21
  [4c63d2b9] StatsFuns v1.5.2
⌅ [3eaba693] StatsModels v0.6.33
  [892a3eda] StringManipulation v0.4.1
  [354b36f9] StringViews v1.3.5
  [856f2bd8] StructTypes v1.11.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [3bb67fe8] TranscodingStreams v0.11.3
  [7200193e] Twiddle v1.1.2
  [81def892] VersionParsing v1.3.0
  [ea10d353] WeakRefStrings v1.4.2
  [1b915085] WinReg v1.0.0
  [76eceee3] WorkerUtilities v1.6.1
  [6e34b625] Bzip2_jll v1.0.9+0
  [079eb43e] NLopt_jll v2.10.0+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [de0858da] Printf v1.11.0
  [9abbd945] Profile v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.16.0+0
  [e37daf67] LibGit2_jll v1.9.1+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.9.9
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.67.1+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
WARNING: Method definition get_n(Any, Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/mapping.jl:13 overwritten on the same line (check for duplicate calls to `include`).
┌ Warning: Replacing docs for `PhyloDiamond.get_n :: Tuple{Any, Any}` in module `PhyloDiamond`
└ @ Base.Docs docs/Docs.jl:253
WARNING: Method definition cfs_in_order(Any, Any, Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/mapping.jl:36 overwritten on the same line (check for duplicate calls to `include`).
┌ Warning: Replacing docs for `PhyloDiamond.cfs_in_order :: Tuple{Any, Any, Any}` in module `PhyloDiamond`
└ @ Base.Docs docs/Docs.jl:253
WARNING: Method definition get_a(Any, Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/mapping.jl:143 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(PhyloDiamond.get_a), Any, Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/mapping.jl:143 overwritten on the same line (check for duplicate calls to `include`).
┌ Warning: Replacing docs for `PhyloDiamond.get_a :: Tuple{Any, Any}` in module `PhyloDiamond`
└ @ Base.Docs docs/Docs.jl:253
WARNING: Method definition inv_net1112(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:8 overwritten on the same line (check for duplicate calls to `include`).
┌ Warning: Replacing docs for `PhyloDiamond.inv_net1112 :: Tuple{Any}` in module `PhyloDiamond`
└ @ Base.Docs docs/Docs.jl:253
WARNING: Method definition inv_net1121(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:23 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition inv_net1211(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:36 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition inv_net2111(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:49 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition inv_net1122(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:61 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition inv_net1212(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:89 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition inv_net2112(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:117 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition inv_net2211(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:140 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition inv_net2121(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:171 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition inv_net1221(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:202 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition inv_net1222(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:228 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition inv_net2212(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:280 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition inv_net2122(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:372 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition inv_net2221(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:400 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition inv_net2222(Any) in module PhyloDiamond at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/invariants.jl:426 overwritten on the same line (check for duplicate calls to `include`).
ERROR: LoadError: UndefVarError: `T` not defined in `SIMD`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
   [1] top-level scope
     @ ~/.julia/packages/SIMD/UiGbs/src/arrayops.jl:4
   [2] include(mapexpr::Function, mod::Module, _path::String)
     @ Base ./Base.jl:310
   [3] top-level scope
     @ ~/.julia/packages/SIMD/UiGbs/src/SIMD.jl:25
   [4] include(mod::Module, _path::String)
     @ Base ./Base.jl:309
   [5] __require_prelocked(pkg::Base.PkgId, env::String)
     @ Base ./loading.jl:2817
   [6] _require_prelocked(uuidkey::Base.PkgId, env::String)
     @ Base ./loading.jl:2576
   [7] macro expansion
     @ ./loading.jl:2504 [inlined]
   [8] macro expansion
     @ ./lock.jl:376 [inlined]
   [9] __require(into::Module, mod::Symbol)
     @ Base ./loading.jl:2468
  [10] require
     @ ./loading.jl:2444 [inlined]
  [11] eval_import_path
     @ ./module.jl:36 [inlined]
  [12] eval_import_path_all(at::Module, path::Expr, keyword::String)
     @ Base ./module.jl:60
  [13] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
     @ Base ./module.jl:101
  [14] top-level scope
     @ ~/.julia/packages/Automa/EyNRt/src/Automa.jl:4
  [15] include(mod::Module, _path::String)
     @ Base ./Base.jl:309
  [16] __require_prelocked(pkg::Base.PkgId, env::String)
     @ Base ./loading.jl:2817
  [17] _require_prelocked(uuidkey::Base.PkgId, env::String)
     @ Base ./loading.jl:2576
  [18] macro expansion
     @ ./loading.jl:2504 [inlined]
  [19] macro expansion
     @ ./lock.jl:376 [inlined]
  [20] __require(into::Module, mod::Symbol)
     @ Base ./loading.jl:2468
  [21] require
     @ ./loading.jl:2444 [inlined]
  [22] eval_import_path
     @ ./module.jl:36 [inlined]
  [23] eval_import_path_all(at::Module, path::Expr, keyword::String)
     @ Base ./module.jl:60
  [24] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr})
     @ Base ./module.jl:101
  [25] top-level scope
     @ ~/.julia/packages/FASTX/KGKFv/src/FASTX.jl:4
  [26] include(mod::Module, _path::String)
     @ Base ./Base.jl:309
  [27] __require_prelocked(pkg::Base.PkgId, env::String)
     @ Base ./loading.jl:2817
  [28] _require_prelocked(uuidkey::Base.PkgId, env::String)
     @ Base ./loading.jl:2576
  [29] macro expansion
     @ ./loading.jl:2504 [inlined]
  [30] macro expansion
     @ ./lock.jl:376 [inlined]
  [31] __require(into::Module, mod::Symbol)
     @ Base ./loading.jl:2468
  [32] require
     @ ./loading.jl:2444 [inlined]
  [33] eval_import_path
     @ ./module.jl:36 [inlined]
  [34] eval_import_path_all(at::Module, path::Expr, keyword::String)
     @ Base ./module.jl:60
  [35] _eval_using(to::Module, path::Expr)
     @ Base ./module.jl:137
  [36] top-level scope
     @ ~/.julia/packages/PhyloNetworks/2KZEt/src/PhyloNetworks.jl:25
  [37] include(mod::Module, _path::String)
     @ Base ./Base.jl:309
  [38] __require_prelocked(pkg::Base.PkgId, env::String)
     @ Base ./loading.jl:2817
  [39] _require_prelocked(uuidkey::Base.PkgId, env::String)
     @ Base ./loading.jl:2576
  [40] macro expansion
     @ ./loading.jl:2504 [inlined]
  [41] macro expansion
     @ ./lock.jl:376 [inlined]
  [42] __require(into::Module, mod::Symbol)
     @ Base ./loading.jl:2468
  [43] require
     @ ./loading.jl:2444 [inlined]
  [44] eval_import_path
     @ ./module.jl:36 [inlined]
  [45] eval_import_path_all(at::Module, path::Expr, keyword::String)
     @ Base ./module.jl:60
  [46] _eval_using(to::Module, path::Expr)
     @ Base ./module.jl:137
  [47] top-level scope
     @ ~/.julia/packages/PhyloDiamond/51vuW/src/ntwk.jl:5
  [48] include(mapexpr::Function, mod::Module, _path::String)
     @ Base ./Base.jl:310
  [49] top-level scope
     @ ~/.julia/packages/PhyloDiamond/51vuW/src/PhyloDiamond.jl:5
  [50] include(mod::Module, _path::String)
     @ Base ./Base.jl:309
  [51] __require_prelocked(pkg::Base.PkgId, env::String)
     @ Base ./loading.jl:2817
  [52] _require_prelocked(uuidkey::Base.PkgId, env::String)
     @ Base ./loading.jl:2576
  [53] macro expansion
     @ ./loading.jl:2504 [inlined]
  [54] macro expansion
     @ ./lock.jl:376 [inlined]
  [55] __require(into::Module, mod::Symbol)
     @ Base ./loading.jl:2468
  [56] require
     @ ./loading.jl:2444 [inlined]
  [57] eval_import_path
     @ ./module.jl:36 [inlined]
  [58] eval_import_path_all(at::Module, path::Expr, keyword::String)
     @ Base ./module.jl:60
  [59] _eval_using(to::Module, path::Expr)
     @ Base ./module.jl:137
  [60] top-level scope
     @ ~/.julia/packages/PhyloDiamond/51vuW/test/runtests.jl:1
  [61] include(mapexpr::Function, mod::Module, _path::String)
     @ Base ./Base.jl:310
  [62] top-level scope
     @ none:6
  [63] eval(m::Module, e::Any)
     @ Core ./boot.jl:489
  [64] exec_options(opts::Base.JLOptions)
     @ Base ./client.jl:310
  [65] _start()
     @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/arrayops.jl:4
in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/SIMD.jl:1
in expression starting at /home/pkgeval/.julia/packages/Automa/EyNRt/src/Automa.jl:1
in expression starting at /home/pkgeval/.julia/packages/FASTX/KGKFv/src/FASTX.jl:1
in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/2KZEt/src/PhyloNetworks.jl:3
in expression starting at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/ntwk.jl:5
in expression starting at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/src/PhyloDiamond.jl:1
in expression starting at /home/pkgeval/.julia/packages/PhyloDiamond/51vuW/test/runtests.jl:1

Testing failed after 413.03s

ERROR: LoadError: Package PhyloDiamond errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2936
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2785 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 846.04s: package tests unexpectedly errored