Package evaluation to test PhyloClustering on Julia 1.14.0-DEV.14 (ec5cf08762*) started at 2025-10-31T02:19:51.269 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.35s ################################################################################ # Installation # Installing PhyloClustering... Resolving package versions... Installed libass_jll ────────────────── v0.17.4+0 Installed ImageIO ───────────────────── v0.6.9 Installed Formatting ────────────────── v0.4.3 Installed Libuuid_jll ───────────────── v2.41.2+0 Installed libaom_jll ────────────────── v3.13.1+0 Installed MosaicViews ───────────────── v0.3.4 Installed MultivariateStats ─────────── v0.10.3 Installed PolygonOps ────────────────── v0.1.2 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed Extents ───────────────────── v0.1.6 Installed InlineStrings ─────────────── v1.4.5 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed NearestNeighbors ──────────── v0.4.22 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed Optim ─────────────────────── v1.13.2 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed UnsafeArrays ──────────────── v1.0.8 Installed OrderedCollections ────────── v1.8.1 Installed Functors ──────────────────── v0.4.12 Installed SentinelArrays ────────────── v1.4.8 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed Giflib_jll ────────────────── v5.2.3+0 Installed AbstractLattices ──────────── v0.3.1 Installed NaNMath ───────────────────── v1.1.3 Installed Distances ─────────────────── v0.10.12 Installed QuadGK ────────────────────── v2.11.2 Installed FileIO ────────────────────── v1.17.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Graphics ──────────────────── v1.1.3 Installed Opus_jll ──────────────────── v1.5.2+0 Installed ScopedValues ──────────────── v1.5.0 Installed WoodburyMatrices ──────────── v1.0.0 Installed Tables ────────────────────── v1.12.1 Installed Arpack ────────────────────── v0.5.4 Installed SimplePolynomials ─────────── v0.2.18 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed EnumX ─────────────────────── v1.0.5 Installed Ogg_jll ───────────────────── v1.3.6+0 Installed LZO_jll ───────────────────── v2.10.3+0 Installed Reexport ──────────────────── v1.2.2 Installed NLSolversBase ─────────────── v7.10.0 Installed Missings ──────────────────── v1.2.0 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Preferences ───────────────── v1.5.0 Installed TableTraits ───────────────── v1.0.1 Installed Imath_jll ─────────────────── v3.1.11+0 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed Polynomials ───────────────── v4.0.21 Installed LaTeXStrings ──────────────── v1.4.0 Installed MappedArrays ──────────────── v0.4.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed Crayons ───────────────────── v4.1.1 Installed Grisu ─────────────────────── v1.0.2 Installed RangeArrays ───────────────── v0.3.2 Installed UnPack ────────────────────── v1.0.2 Installed CRlibm ────────────────────── v1.0.2 Installed Format ────────────────────── v1.3.7 Installed ADTypes ───────────────────── v1.18.0 Installed Inflate ───────────────────── v0.1.5 Installed DiffResults ───────────────── v1.1.0 Installed MacroTools ────────────────── v0.5.16 Installed ColorBrewer ───────────────── v0.4.2 Installed FillArrays ────────────────── v1.14.0 Installed DataStructures ────────────── v0.18.22 Installed ParallelKMeans ────────────── v1.1.0 Installed MathTeXEngine ─────────────── v0.5.7 Installed AbstractTrees ─────────────── v0.4.5 Installed OpenEXR_jll ───────────────── v3.2.4+0 Installed Packing ───────────────────── v0.5.1 Installed LazyModules ───────────────── v0.3.1 Installed DelimitedFiles ────────────── v1.9.1 Installed oneTBB_jll ────────────────── v2022.0.0+1 Installed UnicodeFun ────────────────── v0.4.1 Installed x264_jll ──────────────────── v10164.0.1+0 Installed CodecZlib ─────────────────── v0.7.8 Installed Cairo ─────────────────────── v1.1.1 Installed Observables ───────────────── v0.5.5 Installed MakieCore ─────────────────── v0.7.3 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed StatsBase ─────────────────── v0.33.21 Installed CEnum ─────────────────────── v0.5.0 Installed ArrayInterface ────────────── v7.22.0 Installed DataValueInterfaces ───────── v1.0.0 Installed CairoMakie ────────────────── v0.11.9 Installed CommonSubexpressions ──────── v0.3.1 Installed Libffi_jll ────────────────── v3.4.7+0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed StructUtils ───────────────── v2.5.1 Installed IrrationalConstants ───────── v0.2.6 Installed Clustering ────────────────── v0.15.8 Installed IntegerMathUtils ──────────── v0.1.3 Installed libpng_jll ────────────────── v1.6.50+0 Installed isoband_jll ───────────────── v0.2.3+0 Installed RoundingEmulator ──────────── v0.2.1 Installed Contour ───────────────────── v0.6.3 Installed SimpleTraits ──────────────── v0.9.5 Installed ColorVectorSpace ──────────── v0.10.0 Installed Interpolations ────────────── v0.16.2 Installed ImageMetadata ─────────────── v0.9.10 Installed StableRNGs ────────────────── v1.0.3 Installed libfdk_aac_jll ────────────── v2.0.4+0 Installed libsixel_jll ──────────────── v1.10.5+0 Installed PikaParser ────────────────── v0.6.1 Installed libwebp_jll ───────────────── v1.6.0+0 Installed FFMPEG_jll ────────────────── v8.0.0+0 Installed FASTX ─────────────────────── v2.1.7 Installed Scratch ───────────────────── v1.3.0 Installed Setfield ──────────────────── v1.1.2 Installed ShaderAbstractions ────────── v0.4.1 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed PooledArrays ──────────────── v1.4.3 Installed WeakKeyIdDicts ────────────── v0.1.0 Installed ImageCore ─────────────────── v0.10.5 Installed PDMats ────────────────────── v0.11.35 Installed WorkerUtilities ───────────── v1.6.1 Installed AxisArrays ────────────────── v0.4.8 Installed DocStringExtensions ───────── v0.9.5 Installed BioSequences ──────────────── v3.5.0 Installed PNGFiles ──────────────────── v0.4.4 Installed JpegTurbo ─────────────────── v0.1.6 Installed StableHashTraits ──────────── v1.3.4 Installed ForwardDiff ───────────────── v1.2.2 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed ColorSchemes ──────────────── v3.31.0 Installed DifferentiationInterface ──── v0.7.10 Installed Multisets ─────────────────── v0.4.5 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0 Installed LightXML ──────────────────── v0.9.3 Installed FreeType ──────────────────── v4.1.1 Installed PkgVersion ────────────────── v0.3.3 Installed StackViews ────────────────── v0.1.2 Installed RelocatableFolders ────────── v1.0.1 Installed StringViews ───────────────── v1.3.5 Installed StatsModels ───────────────── v0.7.7 Installed KernelDensity ─────────────── v0.6.10 Installed AliasTables ───────────────── v1.1.3 Installed HashArrayMappedTries ──────── v0.2.0 Installed ShiftedArrays ─────────────── v2.0.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed SIMD ──────────────────────── v3.7.2 Installed Combinatorics ─────────────── v1.0.3 Installed RecipesBase ───────────────── v1.3.4 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed GaussianMixtures ──────────── v0.3.13 Installed Netpbm ────────────────────── v1.1.1 Installed Twiddle ───────────────────── v1.1.2 Installed Colors ────────────────────── v0.12.11 Installed StaticArraysCore ──────────── v1.4.4 Installed ImageAxes ─────────────────── v0.6.12 Installed Mods ──────────────────────── v2.2.6 Installed AbstractFFTs ──────────────── v1.5.0 Installed StaticArrays ──────────────── v1.9.15 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed QOI ───────────────────────── v1.0.1 Installed ColorTypes ────────────────── v0.11.5 Installed AxisAlgorithms ────────────── v1.1.0 Installed StringManipulation ────────── v0.4.1 Installed Requires ──────────────────── v1.3.1 Installed Glib_jll ──────────────────── v2.86.0+0 Installed BaseDirs ──────────────────── v1.3.2 Installed SimplePartitions ──────────── v0.3.3 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed FreeTypeAbstraction ───────── v0.10.8 Installed JSON ──────────────────────── v1.2.0 Installed PrettyTables ──────────────── v3.1.0 Installed Parsers ───────────────────── v2.8.3 Installed Distributions ─────────────── v0.25.122 Installed FiniteDiff ────────────────── v2.29.0 Installed Arpack_jll ────────────────── v3.5.1+1 Installed Rmath ─────────────────────── v0.9.0 Installed BioGenerics ───────────────── v0.1.5 Installed FilePaths ─────────────────── v0.8.3 Installed GeoFormatTypes ────────────── v0.4.4 Installed StatsFuns ─────────────────── v1.5.2 Installed PhyloNetworks ─────────────── v0.16.4 Installed PhyloClustering ───────────── v0.2.0 Installed OpenEXR ───────────────────── v0.3.3 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed SignedDistanceFields ──────── v0.4.0 Installed WeakRefStrings ────────────── v1.4.2 Installed DataFrames ────────────────── v1.8.1 Installed JLLWrappers ───────────────── v1.7.1 Installed XZ_jll ────────────────────── v5.8.1+0 Installed Primes ────────────────────── v0.5.7 Installed GeometryBasics ────────────── v0.4.11 Installed x265_jll ──────────────────── v4.1.0+0 Installed Pango_jll ─────────────────── v1.56.4+0 Installed ExactPredicates ───────────── v2.2.9 Installed StructTypes ───────────────── v1.11.0 Installed GridLayoutBase ────────────── v0.10.2 Installed NLopt ─────────────────────── v1.2.1 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed IterTools ─────────────────── v1.10.0 Installed StatisticalTraits ─────────── v3.5.0 Installed TiffImages ────────────────── v0.11.6 Installed JpegTurbo_jll ─────────────── v3.1.3+0 Installed PaddedViews ───────────────── v0.5.12 Installed FilePathsBase ─────────────── v0.9.24 Installed GLM ───────────────────────── v1.9.0 Installed JLD2 ──────────────────────── v0.5.15 Installed Adapt ─────────────────────── v4.4.0 Installed HypergeometricFunctions ───── v0.3.28 Installed ConstructionBase ──────────── v1.6.0 Installed TriplotBase ───────────────── v0.1.0 Installed Libmount_jll ──────────────── v2.41.2+0 Installed DelaunayTriangulation ─────── v0.8.12 Installed Compat ────────────────────── v4.18.1 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed Sixel ─────────────────────── v0.1.5 Installed TranscodingStreams ────────── v0.11.3 Installed RingLists ─────────────────── v0.2.9 Installed LinearAlgebraX ────────────── v0.2.10 Installed EarCut_jll ────────────────── v2.2.4+0 Installed PlotUtils ─────────────────── v1.4.3 Installed TensorCore ────────────────── v0.1.1 Installed PositiveFactorizations ────── v0.2.4 Installed Statistics ────────────────── v1.11.1 Installed PrecompileTools ───────────── v1.3.3 Installed ImageBase ─────────────────── v0.1.7 Installed StatsAPI ──────────────────── v1.7.1 Installed StructArrays ──────────────── v0.6.21 Installed ProgressMeter ─────────────── v1.11.0 Installed OffsetArrays ──────────────── v1.17.0 Installed WebP ──────────────────────── v0.1.3 Installed Ratios ────────────────────── v0.4.5 Installed BioSymbols ────────────────── v5.2.0 Installed TupleTools ────────────────── v1.6.0 Installed ChainRulesCore ────────────── v1.26.0 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed LAME_jll ──────────────────── v3.100.3+0 Installed Animations ────────────────── v0.4.2 Installed libvorbis_jll ─────────────── v1.3.8+0 Installed Isoband ───────────────────── v0.1.1 Installed ScikitLearnBase ───────────── v0.5.0 Installed Parameters ────────────────── v0.12.3 Installed IntervalArithmetic ────────── v1.0.1 Installed PtrArrays ─────────────────── v1.3.0 Installed XML2_jll ──────────────────── v2.15.1+0 Installed IntervalSets ──────────────── v0.7.11 Installed FixedPointNumbers ─────────── v0.8.5 Installed ScientificTypesBase ───────── v3.0.0 Installed SpecialFunctions ──────────── v2.6.1 Installed CSV ───────────────────────── v0.10.15 Installed Showoff ───────────────────── v1.0.3 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed FFTW ──────────────────────── v1.10.0 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed Permutations ──────────────── v0.4.23 Installed LineSearches ──────────────── v7.4.0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed Automa ────────────────────── v1.1.0 Installed IndirectArrays ────────────── v1.0.0 Installed SimpleRandom ──────────────── v0.3.2 Installed GeoInterface ──────────────── v1.4.1 Installed Makie ─────────────────────── v0.20.8 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed MLJModelInterface ─────────── v1.12.0 Installed SimpleGraphs ──────────────── v0.8.7 Installing 56 artifacts Installed artifact FriBidi 78.9 KiB Installed artifact CRlibm 169.5 KiB Installed artifact Ogg 250.3 KiB Installed artifact Imath 182.8 KiB Installed artifact NLopt 322.7 KiB Installed artifact Expat 283.3 KiB Installed artifact Pango 1.1 MiB Installed artifact Graphite2 120.2 KiB Installed artifact LZO 208.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact libvorbis 271.0 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Arpack 147.2 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact XZ 1.5 MiB Installed artifact isoband 25.7 KiB Installed artifact libaom 6.4 MiB Installed artifact FreeType2 1.5 MiB Installed artifact FFTW 2.2 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Libuuid 3.7 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact LERC 272.9 KiB Installed artifact Pixman 372.2 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact Opus 925.5 KiB Installed artifact libpng 328.4 KiB Installed artifact EarCut 80.5 KiB Installed artifact libass 427.8 KiB Installed artifact Glib 7.7 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Bzip2 503.5 KiB Installed artifact x265 1.4 MiB Installed artifact Cairo 2.2 MiB Installed artifact Libffi 44.2 KiB Installed artifact libsixel 177.3 KiB Installed artifact Giflib 154.6 KiB Installed artifact OpenEXR 1.9 MiB Installed artifact Libiconv 1.9 MiB Installed artifact libwebp 2.6 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact x264 2.1 MiB Installed artifact Rmath 121.9 KiB Installed artifact LAME 292.5 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact XML2 2.2 MiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Installed artifact Libmount 6.5 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Libtiff 2.3 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact FFMPEG 11.7 MiB Updating `~/.julia/environments/v1.14/Project.toml` [2e4ec7c6] + PhyloClustering v0.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [621f4979] + AbstractFFTs v1.5.0 [398f06c4] + AbstractLattices v0.3.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.3.2 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 ⌅ [13f3f980] + CairoMakie v0.11.9 [d360d2e6] + ChainRulesCore v1.26.0 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [927a84f5] + DelaunayTriangulation v0.8.12 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.10 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.9 [411431e0] + Extents v0.1.6 [c2308a5c] + FASTX v2.1.7 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.1 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [59287772] + Formatting v0.4.3 [f6369f11] + ForwardDiff v1.2.2 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 ⌅ [d9f16b24] + Functors v0.4.12 [38e38edf] + GLM v1.9.0 [cc18c42c] + GaussianMixtures v0.3.13 [68eda718] + GeoFormatTypes v0.4.4 ⌃ [cf35fbd7] + GeoInterface v1.4.1 ⌅ [5c1252a2] + GeometryBasics v0.4.11 [a2bd30eb] + Graphics v1.1.3 ⌅ [3955a311] + GridLayoutBase v0.10.2 [42e2da0e] + Grisu v1.0.2 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [18e54dd8] + IntegerMathUtils v0.1.3 [a98d9a8b] + Interpolations v0.16.2 [d1acc4aa] + IntervalArithmetic v1.0.1 [8197267c] + IntervalSets v0.7.11 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.2.0 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.10 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.3 [d3d80556] + LineSearches v7.4.0 [9b3f67b0] + LinearAlgebraX v0.2.10 [2ab3a3ac] + LogExpFunctions v0.3.29 [e80e1ace] + MLJModelInterface v1.12.0 [1914dd2f] + MacroTools v0.5.16 ⌅ [ee78f7c6] + Makie v0.20.8 ⌅ [20f20a25] + MakieCore v0.7.3 [dbb5928d] + MappedArrays v0.4.2 ⌅ [0a4f8689] + MathTeXEngine v0.5.7 [e1d29d7a] + Missings v1.2.0 [7475f97c] + Mods v2.2.6 [e94cdb99] + MosaicViews v0.3.4 [3b2b4ff1] + Multisets v0.4.5 [6f286f6a] + MultivariateStats v0.10.3 [d41bc354] + NLSolversBase v7.10.0 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [f09324ee] + Netpbm v1.1.1 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [f57f5aa1] + PNGFiles v0.4.4 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [42b8e9d4] + ParallelKMeans v1.1.0 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [2ae35dd2] + Permutations v0.4.23 [2e4ec7c6] + PhyloClustering v0.2.0 ⌅ [33ad39ac] + PhyloNetworks v0.16.4 [3bbf5609] + PikaParser v0.6.1 [eebad327] + PkgVersion v0.3.3 [995b91a9] + PlotUtils v1.4.3 [647866c9] + PolygonOps v0.1.2 ⌃ [f27b6e38] + Polynomials v4.0.21 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + 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[64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.5 ⌅ [09ab397b] + StructArrays v0.6.21 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.5.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.6 [3bb67fe8] + TranscodingStreams v0.11.3 [981d1d27] + TriplotBase v0.1.0 [9d95972d] + TupleTools v1.6.0 [7200193e] + Twiddle v1.1.2 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [c4a57d5a] + UnsafeArrays v1.0.8 [ecbed89c] + WeakKeyIdDicts v0.1.0 [ea10d353] + WeakRefStrings v1.4.2 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [68821587] + Arpack_jll v3.5.1+1 [6e34b625] + Bzip2_jll v1.0.9+0 [4e9b3aee] + CRlibm_jll v1.0.1+0 [83423d85] + Cairo_jll v1.18.5+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.7.3+0 [b22a6f82] + FFMPEG_jll v8.0.0+0 [f5851436] + FFTW_jll v3.3.11+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [59f7168a] + Giflib_jll v5.2.3+0 [7746bdde] + Glib_jll v2.86.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [905a6f67] + Imath_jll v3.1.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [856f044c] + MKL_jll v2025.2.0+0 [079eb43e] + NLopt_jll v2.10.0+0 [e7412a2a] + Ogg_jll v1.3.6+0 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.2.4+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.5.2+0 [36c8627f] + Pango_jll v1.56.4+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [02c8fc9c] + XML2_jll v2.15.1+0 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [9a68df92] + isoband_jll v0.2.3+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [b53b4c65] + libpng_jll v1.6.50+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [8bf52ea8] + CRC32c v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 26.78s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4577.4 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4137.9 ms ✓ MacroTools 1626.3 ms ✓ InlineStrings 749.5 ms ✓ Reexport 951.4 ms ✓ MappedArrays 870.5 ms ✓ TensorCore 1482.7 ms ✓ ConstructionBase 1246.2 ms ✓ Mods 1916.3 ms ✓ IrrationalConstants 1036.7 ms ✓ DataValueInterfaces 839.5 ms ✓ StatsAPI 2183.1 ms ✓ Format 966.4 ms ✓ Observables 813.3 ms ✓ Twiddle 876.1 ms ✓ RoundingEmulator 785.8 ms ✓ PolygonOps 1153.3 ms ✓ IterTools 983.1 ms ✓ IntervalSets 811.4 ms ✓ CEnum 1416.9 ms ✓ Functors 2061.6 ms ✓ Combinatorics 1117.0 ms ✓ StringViews 1026.2 ms ✓ RingLists 981.9 ms ✓ Inflate 859.2 ms ✓ Contour 968.6 ms ✓ TupleTools 1258.2 ms ✓ TranscodingStreams 833.2 ms ✓ LaTeXStrings 1088.8 ms ✓ Statistics 943.1 ms ✓ StaticArraysCore 861.7 ms ✓ WeakKeyIdDicts 896.9 ms ✓ StableRNGs 738.8 ms ✓ AbstractLattices 895.9 ms ✓ GeoFormatTypes 800.3 ms ✓ PtrArrays 1198.8 ms ✓ Grisu 974.9 ms ✓ PositiveFactorizations 856.8 ms ✓ DataAPI 859.1 ms ✓ InvertedIndices 1140.3 ms ✓ Multisets 962.8 ms ✓ LazyModules 856.4 ms ✓ ShiftedArrays 1119.1 ms ✓ AbstractTrees 1026.1 ms ✓ AbstractFFTs 947.7 ms ✓ EnumX 964.2 ms ✓ WorkerUtilities 1968.1 ms ✓ FillArrays 770.8 ms ✓ IntegerMathUtils 850.0 ms ✓ ScientificTypesBase 887.6 ms ✓ TriplotBase 811.0 ms ✓ IndirectArrays 1004.0 ms ✓ UnPack 1242.1 ms ✓ Extents 827.2 ms ✓ RangeArrays 1275.1 ms ✓ OrderedCollections 909.5 ms ✓ HashArrayMappedTries 1381.9 ms ✓ ADTypes 1118.6 ms ✓ DocStringExtensions 1042.1 ms ✓ UnsafeArrays 4728.4 ms ✓ BaseDirs 1608.5 ms ✓ OffsetArrays 719.6 ms ✓ IteratorInterfaceExtensions 1816.0 ms ✓ Crayons 981.0 ms ✓ DelimitedFiles 1180.7 ms ✓ Formatting 962.5 ms ✓ NaNMath 1155.5 ms ✓ Requires 1192.6 ms ✓ SuiteSparse 1401.1 ms ✓ WoodburyMatrices 860.8 ms ✓ Scratch 2605.9 ms ✓ SentinelArrays 1516.3 ms ✓ StructTypes 1420.6 ms ✓ StructUtils 1815.0 ms ✓ ProgressMeter 3251.0 ms ✓ UnicodeFun 1096.1 ms ✓ Compat 1083.7 ms ✓ Preferences 4275.7 ms ✓ PkgVersion 1728.2 ms ✓ CommonSubexpressions 3359.9 ms ✓ SimpleTraits 963.1 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 2953.5 ms ✓ MakieCore 776.1 ms ✓ IntervalSets → IntervalSetsRandomExt 802.9 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1071.8 ms ✓ Permutations 896.8 ms ✓ BioGenerics 922.7 ms ✓ CodecZlib 775.2 ms ✓ SignedDistanceFields 1232.4 ms ✓ Statistics → SparseArraysExt 3630.5 ms ✓ FixedPointNumbers 909.1 ms ✓ ScikitLearnBase 1363.5 ms ✓ Distances 710.9 ms ✓ IntervalSets → IntervalSetsStatisticsExt 810.4 ms ✓ DiffResults 921.7 ms ✓ AliasTables 811.0 ms ✓ Showoff 926.4 ms ✓ Missings 972.2 ms ✓ PooledArrays 3403.4 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1507.9 ms ✓ FillArrays → FillArraysSparseArraysExt 925.6 ms ✓ FillArrays → FillArraysStatisticsExt 1092.3 ms ✓ Primes 830.6 ms ✓ StatisticalTraits 1995.1 ms ✓ GeoInterface 914.6 ms ✓ Parameters 823.4 ms ✓ ScopedValues 743.3 ms ✓ ADTypes → ADTypesConstructionBaseExt 1693.0 ms ✓ DifferentiationInterface 1268.1 ms ✓ LogExpFunctions 1419.5 ms ✓ PikaParser 842.2 ms ✓ PaddedViews 793.7 ms ✓ StackViews 757.3 ms ✓ TableTraits 803.5 ms ✓ Ratios 976.3 ms ✓ Adapt 9167.5 ms ✓ FileIO 1795.7 ms ✓ PDMats 1344.9 ms ✓ AxisAlgorithms 1141.7 ms ✓ RelocatableFolders 798.5 ms ✓ Compat → CompatLinearAlgebraExt 1059.2 ms ✓ PrecompileTools 1286.0 ms ✓ JLLWrappers 2903.6 ms ✓ Setfield 1601.2 ms ✓ AxisArrays 4407.2 ms ✓ ColorTypes 1243.9 ms ✓ Distances → DistancesSparseArraysExt 3000.1 ms ✓ MLJModelInterface 1239.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 942.5 ms ✓ MosaicViews 1654.7 ms ✓ Tables 929.6 ms ✓ Ratios → RatiosFixedPointNumbersExt 1086.5 ms ✓ ArrayInterface 1285.9 ms ✓ Adapt → AdaptSparseArraysExt 838.1 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1381.7 ms ✓ FillArrays → FillArraysPDMatsExt 2595.7 ms ✓ ChainRulesCore 1984.6 ms ✓ FilePathsBase 3816.3 ms ✓ DataStructures 2495.6 ms ✓ BioSymbols 3027.8 ms ✓ StringManipulation 1 dependency had output during precompilation: ┌ Formatting │ ┌ Warning: DEPRECATION NOTICE │ │ │ │ Formatting.jl has been unmaintained for a while, with some serious │ │ correctness bugs compromising the original purpose of the package. As a result, │ │ it has been deprecated - consider using an alternative, such as │ │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly. │ │ │ │ If you are not using Formatting.jl as a direct dependency, please consider │ │ opening an issue on any packages you are using that do use it as a dependency. │ │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which │ │ package originally brings it in as a dependency. │ └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12 └ Precompilation completed after 228.75s ################################################################################ # Testing # Testing PhyloClustering Status `/tmp/jl_INKQxm/Project.toml` ⌅ [13f3f980] CairoMakie v0.11.9 [aaaa29a8] Clustering v0.15.8 [861a8166] Combinatorics v1.0.3 [b4f34e82] Distances v0.10.12 [59287772] Formatting v0.4.3 [cc18c42c] GaussianMixtures v0.3.13 [6f286f6a] MultivariateStats v0.10.3 [42b8e9d4] ParallelKMeans v1.1.0 [2e4ec7c6] PhyloClustering v0.2.0 ⌅ [33ad39ac] PhyloNetworks v0.16.4 [295af30f] Revise v3.11.0 [860ef19b] StableRNGs v1.0.3 ⌅ [2913bbd2] StatsBase v0.33.21 [fd094767] Suppressor v0.2.8 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_INKQxm/Manifest.toml` [47edcb42] ADTypes v1.18.0 [621f4979] AbstractFFTs v1.5.0 [398f06c4] AbstractLattices v0.3.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.22.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols v5.2.0 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 ⌅ [13f3f980] CairoMakie v0.11.9 [d360d2e6] ChainRulesCore v1.26.0 [aaaa29a8] Clustering v0.15.8 [da1fd8a2] CodeTracking v2.0.1 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [927a84f5] DelaunayTriangulation v0.8.12 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.10 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.9 [411431e0] Extents v0.1.6 [c2308a5c] FASTX v2.1.7 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.17.1 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase 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v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: UndefVarError: `T` not defined in `SIMD` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/SIMD/UiGbs/src/arrayops.jl:4 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [3] top-level scope @ ~/.julia/packages/SIMD/UiGbs/src/SIMD.jl:25 [4] include(mod::Module, _path::String) @ Base ./Base.jl:309 [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [7] macro expansion @ ./loading.jl:2504 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [10] require @ ./loading.jl:2444 [inlined] [11] eval_import_path @ ./module.jl:36 [inlined] [12] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [13] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [14] top-level scope @ ~/.julia/packages/Automa/EyNRt/src/Automa.jl:4 [15] include(mod::Module, _path::String) @ Base ./Base.jl:309 [16] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [17] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [18] macro expansion @ ./loading.jl:2504 [inlined] [19] macro expansion @ ./lock.jl:376 [inlined] [20] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [21] require @ ./loading.jl:2444 [inlined] [22] eval_import_path @ ./module.jl:36 [inlined] [23] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [24] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [25] top-level scope @ ~/.julia/packages/FASTX/KGKFv/src/FASTX.jl:4 [26] include(mod::Module, _path::String) @ Base ./Base.jl:309 [27] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [28] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [29] macro expansion @ ./loading.jl:2504 [inlined] [30] macro expansion @ ./lock.jl:376 [inlined] [31] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [32] require @ ./loading.jl:2444 [inlined] [33] eval_import_path @ ./module.jl:36 [inlined] [34] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [35] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [36] top-level scope @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:25 [37] include(mod::Module, _path::String) @ Base ./Base.jl:309 [38] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [39] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [40] macro expansion @ ./loading.jl:2504 [inlined] [41] macro expansion @ ./lock.jl:376 [inlined] [42] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [43] require @ ./loading.jl:2444 [inlined] [44] eval_import_path @ ./module.jl:36 [inlined] [45] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [46] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [47] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1 [48] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [49] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:4 [50] include(mod::Module, _path::String) @ Base ./Base.jl:309 [51] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2817 [52] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2576 [53] macro expansion @ ./loading.jl:2504 [inlined] [54] macro expansion @ ./lock.jl:376 [inlined] [55] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2468 [56] require @ ./loading.jl:2444 [inlined] [57] eval_import_path @ ./module.jl:36 [inlined] [58] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [59] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [60] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/test/runtests.jl:1 [61] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [62] top-level scope @ none:6 [63] eval(m::Module, e::Any) @ Core ./boot.jl:489 [64] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [65] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/arrayops.jl:4 in expression starting at /home/pkgeval/.julia/packages/SIMD/UiGbs/src/SIMD.jl:1 in expression starting at /home/pkgeval/.julia/packages/Automa/EyNRt/src/Automa.jl:1 in expression starting at /home/pkgeval/.julia/packages/FASTX/KGKFv/src/FASTX.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/test/runtests.jl:1 Testing failed after 397.49s ERROR: LoadError: Package PhyloClustering errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2936 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2785 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 690.21s: package tests unexpectedly errored