Package evaluation to test FlxQTL on Julia 1.14.0-DEV.14 (ec5cf08762*) started at 2025-10-30T16:20:10.811


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 7.02s


################################################################################
# Installation
#

Installing FlxQTL...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [ede81e08] + FlxQTL v3.0.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.1
  [8bb1440f] + DelimitedFiles v1.9.1
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [1a297f60] + FillArrays v1.14.0
  [ede81e08] + FlxQTL v3.0.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [30fc2ffe] + LossFunctions v1.1.1
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.36
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.9.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.7
  [4c63d2b9] + StatsFuns v1.5.2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 3.48s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   1315.7 ms  ✓ LossFunctions
   1239.7 ms  ✓ PDMats → StatsBaseExt
   7540.1 ms  ✓ Distributions
   4985.4 ms  ✓ FlxQTL
  4 dependencies successfully precompiled in 16 seconds. 49 already precompiled.

Precompilation completed after 24.48s


################################################################################
# Testing
#

     Testing FlxQTL
      Status `/tmp/jl_TnrR00/Project.toml`
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.122
  [ede81e08] FlxQTL v3.0.0
  [30fc2ffe] LossFunctions v1.1.1
  [90137ffa] StaticArrays v1.9.15
  [10745b16] Statistics v1.11.1
  [2913bbd2] StatsBase v0.34.7
  [8ba89e20] Distributed v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_TnrR00/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.19.1
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.122
  [ffbed154] DocStringExtensions v0.9.5
  [1a297f60] FillArrays v1.14.0
  [ede81e08] FlxQTL v3.0.0
  [34004b35] HypergeometricFunctions v0.3.28
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [30fc2ffe] LossFunctions v1.1.1
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.36
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [79098fc4] Rmath v0.9.0
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.6.1
  [90137ffa] StaticArrays v1.9.15
  [1e83bf80] StaticArraysCore v1.4.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
  [2913bbd2] StatsBase v0.34.7
  [4c63d2b9] StatsFuns v1.5.2
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
     Testing Running tests...
Positive definiteness dropping chromosome 1 is true.
Positive definiteness dropping chromosome 2 is true.
Test Passed
Test Passed
Kinship dropping chromosome 1 is corrected to be positive definite:isposdef(K_loco[:,:,l])
Kinship dropping chromosome 2 is corrected to be positive definite:isposdef(K_loco[:,:,l])
Test Passed
Test Passed
Kinship dropping chromosome 1 is corrected to be positive definite:isposdef(K_loco[:,:,l])
Kinship dropping chromosome 2 is corrected to be positive definite:isposdef(K_loco[:,:,l])
Test Passed
Test Passed
Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedKinship dropping chromosome 1 is corrected to be positive definite
Kinship dropping chromosome 2 is corrected to be positive definite
  0.125707 seconds (366.07 k allocations: 33.606 MiB, 57.73% gc time)
  0.001396 seconds (7.56 k allocations: 667.641 KiB)
  0.164906 seconds (366.07 k allocations: 33.606 MiB, 57.36% gc time)
  0.001375 seconds (7.30 k allocations: 642.328 KiB)
  0.003931 seconds (29.81 k allocations: 2.754 MiB)
  0.020135 seconds (172.81 k allocations: 14.746 MiB)
  0.003970 seconds (29.81 k allocations: 2.754 MiB)
  0.040117 seconds (243.07 k allocations: 20.747 MiB, 28.62% gc time)
  0.003987 seconds (29.81 k allocations: 2.754 MiB)
  0.014770 seconds (121.17 k allocations: 10.375 MiB)
  0.004096 seconds (29.81 k allocations: 2.754 MiB)
  0.014979 seconds (116.08 k allocations: 9.936 MiB)
Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed 10.103872 seconds (47.18 M allocations: 7.414 GiB, 7.16% gc time)
  0.014961 seconds (82.19 k allocations: 12.380 MiB)
 10.096344 seconds (47.18 M allocations: 7.415 GiB, 7.20% gc time)
 10.051472 seconds (47.18 M allocations: 7.415 GiB, 6.76% gc time)
Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed
Test Passed
  6.588357 seconds (30.18 M allocations: 4.778 GiB, 7.76% gc time)
  0.537509 seconds (2.70 M allocations: 396.088 MiB, 7.93% gc time)
  5.102243 seconds (23.17 M allocations: 3.641 GiB, 8.23% gc time)
 28.885036 seconds (143.73 M allocations: 20.444 GiB, 8.28% gc time)
  5.105838 seconds (23.17 M allocations: 3.642 GiB, 8.06% gc time)
 29.261238 seconds (143.73 M allocations: 20.444 GiB, 8.11% gc time)
  5.008068 seconds (23.17 M allocations: 3.642 GiB, 7.89% gc time)
 29.823580 seconds (143.73 M allocations: 20.444 GiB, 8.02% gc time)
  6.595475 seconds (30.18 M allocations: 4.779 GiB, 7.93% gc time)
  0.539028 seconds (2.70 M allocations: 396.089 MiB, 8.27% gc time)
  6.698399 seconds (30.18 M allocations: 4.779 GiB, 7.92% gc time)
  0.537381 seconds (2.70 M allocations: 396.090 MiB, 7.62% gc time)
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
  5.024402 seconds (23.17 M allocations: 3.641 GiB, 8.37% gc time)
 25.854222 seconds (125.85 M allocations: 18.057 GiB, 8.14% gc time)
  5.069076 seconds (23.17 M allocations: 3.642 GiB, 8.10% gc time)
  5.162535 seconds (23.17 M allocations: 3.642 GiB, 7.97% gc time)
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Passed
Test Summary: | Pass  Total      Time
FlxQTL.jl     |  244    244  13m55.9s
     Testing FlxQTL tests passed 

Testing completed after 764.82s

PkgEval succeeded after 925.62s