Package evaluation to test Stheno on Julia 1.13.0-DEV.1342 (4ff19f0352*) started at 2025-10-19T17:17:58.038 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.54s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.0 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.14.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.66 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.4s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 72.58s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_L5AoU0/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_L5AoU0/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.12.0 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.14.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.2.2 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.6 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.66 [929cbde3] LLVM v9.4.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.38+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/Ms56q/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#140` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 18m31.6s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1120s / 99.2% 28.1GiB / 99.5% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 704s 63.4% 704s 19.6GiB 70.1% 19.6GiB addition 1 392s 35.3% 392s 11.4GiB 40.8% 11.4GiB Standardised Tests (correlated sum) 1 219s 19.7% 219s 6.21GiB 22.2% 6.21GiB adj_ad 9 24.6s 2.2% 2.74s 0.97GiB 3.5% 110MiB adj_fd 9 8.46s 0.8% 940ms 300MiB 1.0% 33.3MiB Standardised Tests (independent sum) 1 127s 11.4% 127s 4.88GiB 17.5% 4.88GiB adj_ad 9 24.3s 2.2% 2.70s 1.18GiB 4.2% 135MiB adj_fd 9 9.39s 0.8% 1.04s 283MiB 1.0% 31.4MiB Correlated GPs 1 43.4s 3.9% 43.4s 264MiB 0.9% 264MiB Consistency Tests 1 18.7s 1.7% 18.7s 113MiB 0.4% 113MiB Verify mean / kernel numerically 1 2.90s 0.3% 2.90s 38.7MiB 0.1% 38.7MiB Consistency Tests 1 1.55s 0.1% 1.55s 11.7MiB 0.0% 11.7MiB product 1 147s 13.2% 147s 3.77GiB 13.5% 3.77GiB multiply by function 1 84.2s 7.6% 84.2s 2.01GiB 7.2% 2.01GiB Diff Tests 1 47.3s 4.3% 47.3s 1.52GiB 5.4% 1.52GiB adj_ad 9 18.6s 1.7% 2.07s 836MiB 2.9% 92.9MiB adj_fd 9 5.48s 0.5% 609ms 108MiB 0.4% 12.0MiB Consistency Tests 1 5.68s 0.5% 5.68s 96.4MiB 0.3% 96.4MiB multiply by constant 1 62.3s 5.6% 62.3s 1.76GiB 6.3% 1.76GiB Diff Tests 1 46.5s 4.2% 46.5s 1.72GiB 6.2% 1.72GiB adj_ad 9 15.0s 1.3% 1.66s 765MiB 2.7% 85.0MiB adj_fd 9 9.79s 0.9% 1.09s 276MiB 1.0% 30.7MiB Consistency Tests 1 3.81s 0.3% 3.81s 16.6MiB 0.1% 16.6MiB GP mul errors 1 10.8ms 0.0% 10.8ms 37.2KiB 0.0% 37.2KiB compose 1 79.4s 7.1% 79.4s 2.30GiB 8.2% 2.30GiB general 1 48.5s 4.4% 48.5s 1.50GiB 5.4% 1.50GiB Diff Tests 1 43.5s 3.9% 43.5s 1.46GiB 5.2% 1.46GiB adj_ad 9 13.6s 1.2% 1.51s 706MiB 2.5% 78.4MiB adj_fd 9 5.27s 0.5% 585ms 110MiB 0.4% 12.3MiB Consistency Tests 1 3.71s 0.3% 3.71s 32.3MiB 0.1% 32.3MiB Stretch 1 25.0s 2.3% 25.0s 720MiB 2.5% 720MiB scalar stretch 1 24.2s 2.2% 24.2s 708MiB 2.5% 708MiB scalar input 1 23.4s 2.1% 23.4s 704MiB 2.5% 704MiB adj_fd 9 8.78s 0.8% 976ms 265MiB 0.9% 29.4MiB adj_ad 9 3.16s 0.3% 352ms 136MiB 0.5% 15.1MiB vector input 1 815ms 0.1% 815ms 3.07MiB 0.0% 3.07MiB Vector stretch 1 639ms 0.1% 639ms 9.36MiB 0.0% 9.36MiB Matrix stretch 1 134ms 0.0% 134ms 2.82MiB 0.0% 2.82MiB Shift 1 3.11s 0.3% 3.11s 37.5MiB 0.1% 37.5MiB Shift{Vector{Float64}} 1 1.70s 0.2% 1.70s 13.5MiB 0.0% 13.5MiB Shift{Float64} 1 1.41s 0.1% 1.41s 23.9MiB 0.1% 23.9MiB Select 1 1.65s 0.1% 1.65s 30.0MiB 0.1% 30.0MiB evaluation 1 779ms 0.1% 779ms 19.5MiB 0.1% 19.5MiB idx isa Vector 1 507ms 0.0% 507ms 7.33MiB 0.0% 7.33MiB idx isa Integer 1 362ms 0.0% 362ms 3.19MiB 0.0% 3.19MiB Periodic 1 1.15s 0.1% 1.15s 31.2MiB 0.1% 31.2MiB cross 1 29.4s 2.6% 29.4s 1.33GiB 4.8% 1.33GiB block arrays 1 16.8s 1.5% 16.8s 785MiB 2.7% 785MiB Stheno._collect ∘ _mortar 1 14.1s 1.3% 14.1s 659MiB 2.3% 659MiB BlockMatrix 1 7.63s 0.7% 7.63s 376MiB 1.3% 376MiB adj_fd 1 1.58s 0.1% 1.58s 130MiB 0.5% 130MiB adj_ad 1 56.7ms 0.0% 56.7ms 2.19MiB 0.0% 2.19MiB BlockVector 1 6.51s 0.6% 6.51s 283MiB 1.0% 283MiB adj_fd 1 737ms 0.1% 737ms 11.7MiB 0.0% 11.7MiB adj_ad 1 216ms 0.0% 216ms 15.0MiB 0.1% 15.0MiB fdm stuff 1 2.62s 0.2% 2.62s 126MiB 0.4% 126MiB Correctness tests 1 7.94s 0.7% 7.94s 411MiB 1.4% 411MiB Standardised Tests 1 4.69s 0.4% 4.69s 165MiB 0.6% 165MiB gp 1 191s 17.2% 191s 4.35GiB 15.6% 4.35GiB adj_ad 2 20.1s 1.8% 10.1s 798MiB 2.8% 399MiB sparse gp 1 19.0s 1.7% 19.0s 375MiB 1.3% 375MiB SparseFiniteGP inference 1 13.9s 1.3% 13.9s 256MiB 0.9% 256MiB SparseFiniteGP methods 1 4.73s 0.4% 4.73s 115MiB 0.4% 115MiB SparseFiniteGP Constructors 1 364ms 0.0% 364ms 3.87MiB 0.0% 3.87MiB gp 1 17.3s 1.6% 17.3s 356MiB 1.2% 356MiB GP 1 17.0s 1.5% 17.0s 353MiB 1.2% 353MiB independent GPs 1 274ms 0.0% 274ms 2.47MiB 0.0% 2.47MiB wrapped AbstractGP 1 11.3ms 0.0% 11.3ms 271KiB 0.0% 271KiB adj_fd 2 2.77s 0.2% 1.38s 40.4MiB 0.1% 20.2MiB derived_gp 1 172μs 0.0% 172μs 1.94KiB 0.0% 1.94KiB gaussian_process_probabilistic_programme 1 141s 12.7% 141s 2.16GiB 7.7% 2.16GiB Zygote 1 27.6s 2.5% 27.6s 0.94GiB 3.4% 0.94GiB nested gppp 1 15.1s 1.4% 15.1s 71.5MiB 0.3% 71.5MiB External Consistency 1 14.7s 1.3% 14.7s 90.7MiB 0.3% 90.7MiB split 1 579ms 0.1% 579ms 11.1MiB 0.0% 11.1MiB gppp macro 1 52.4ms 0.0% 52.4ms 539KiB 0.0% 539KiB doctests 1 68.1s 6.1% 68.1s 1.64GiB 5.9% 1.64GiB BlockData 1 5.97s 0.5% 5.97s 215MiB 0.8% 215MiB vcat(::GPPPInput...) 1 1.35s 0.1% 1.35s 75.7MiB 0.3% 75.7MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1137.61s PkgEval succeeded after 1243.64s