Package evaluation to test Tractography on Julia 1.13.0-DEV.1319 (9cddfda8ef*) started at 2025-10-16T21:56:18.539 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.59s ################################################################################ # Installation # Installing Tractography... Resolving package versions... Installed FastTransforms ─ v0.17.0 Installed Tractography ─── v0.0.2 Updating `~/.julia/environments/v1.13/Project.toml` [df9aafbb] + Tractography v0.0.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.21.0 [4c555306] + ArrayLayouts v1.12.0 [a9b6321e] + Atomix v1.1.2 [aae01518] + BandedMatrices v1.9.5 [0e736298] + Bessels v0.2.8 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.7 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [717857b8] + DSP v0.8.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [411431e0] + Extents v0.1.6 [7a1cc6ca] + FFTW v1.10.0 [442a2c76] + FastGaussQuadrature v1.1.0 [057dd010] + FastTransforms v0.17.0 [1a297f60] + FillArrays v1.14.0 [f6369f11] + ForwardDiff v1.2.2 [a8297547] + GenericFFT v0.1.6 [5c1252a2] + GeometryBasics v0.5.10 [3e5b6fbb] + HostCPUFeatures v0.1.17 [615f187c] + IfElse v0.1.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [63c18a36] + KernelAbstractions v0.9.38 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.8.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.173 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.2 [e1d29d7a] + Missings v1.2.0 [bdf0d083] + MultiFloats v2.3.0 [a3a9e032] + NIfTI v0.6.1 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [1d0040c9] + PolyesterWeave v0.2.2 [f27b6e38] + Polynomials v4.1.0 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [baca2653] + Quickhull v0.2.2 [3cdcf5f2] + RecipesBase v1.3.4 [807425ed] + RecurrenceRelationships v0.2.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [431bcebd] + SciMLPublic v1.0.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [8290d209] + ThreadingUtilities v0.5.5 [c751599d] + ToeplitzMatrices v0.8.5 [df9aafbb] + Tractography v0.0.2 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [3d5dd08c] + VectorizationBase v0.21.72 [5ae413db] + EarCut_jll v2.2.4+0 [f5851436] + FFTW_jll v3.3.11+0 [34b6f7d7] + FastTransforms_jll v0.6.3+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [3a97d323] + MPFR_jll v4.2.2+0 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building FastTransforms → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b41969ccec1379b33967c9b720a250d4687cfc2d/build.log` Installation completed after 10.85s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 64.87s ################################################################################ # Testing # Testing Tractography Status `/tmp/jl_ZzHbKF/Project.toml` [7d9f7c33] Accessors v0.1.42 [ffbed154] DocStringExtensions v0.9.5 [057dd010] FastTransforms v0.17.0 [f6369f11] ForwardDiff v1.2.2 [5c1252a2] GeometryBasics v0.5.10 [63c18a36] KernelAbstractions v0.9.38 [bdcacae8] LoopVectorization v0.12.173 [a3a9e032] NIfTI v0.6.1 [d96e819e] Parameters v0.12.3 [92933f4c] ProgressMeter v1.11.0 [baca2653] Quickhull v0.2.2 [90137ffa] StaticArrays v1.9.15 [2913bbd2] StatsBase v0.34.6 [df9aafbb] Tractography v0.0.2 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_ZzHbKF/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.21.0 [4c555306] ArrayLayouts v1.12.0 [a9b6321e] Atomix v1.1.2 [aae01518] BandedMatrices v1.9.5 [0e736298] Bessels v0.2.8 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.7 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [717857b8] DSP v0.8.4 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [411431e0] Extents v0.1.6 [7a1cc6ca] FFTW v1.10.0 [442a2c76] FastGaussQuadrature v1.1.0 [057dd010] FastTransforms v0.17.0 [1a297f60] FillArrays v1.14.0 [f6369f11] ForwardDiff v1.2.2 [a8297547] GenericFFT v0.1.6 [5c1252a2] GeometryBasics v0.5.10 [3e5b6fbb] HostCPUFeatures v0.1.17 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [63c18a36] KernelAbstractions v0.9.38 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.8.0 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.173 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [dbb5928d] MappedArrays v0.4.2 [e1d29d7a] Missings v1.2.0 [bdf0d083] MultiFloats v2.3.0 [a3a9e032] NIfTI v0.6.1 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [d96e819e] Parameters v0.12.3 [1d0040c9] PolyesterWeave v0.2.2 [f27b6e38] Polynomials v4.1.0 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [baca2653] Quickhull v0.2.2 [3cdcf5f2] RecipesBase v1.3.4 [807425ed] RecurrenceRelationships v0.2.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [fdea26ae] SIMD v3.7.2 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [431bcebd] SciMLPublic v1.0.0 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [8290d209] ThreadingUtilities v0.5.5 [c751599d] ToeplitzMatrices v0.8.5 [df9aafbb] Tractography v0.0.2 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [3d5dd08c] VectorizationBase v0.21.72 [5ae413db] EarCut_jll v2.2.4+0 [f5851436] FFTW_jll v3.3.11+0 [34b6f7d7] FastTransforms_jll v0.6.3+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... TMC with elype Float32 ├─ Δt = 0.125 ├─ minimal probability = 0.005 ├─ cone = Cone{Int64}(15) ├─ mollifier = default_mollifier ├─ evaluation of SH = Tractography.PreComputeAllODF() └─ data : ⋯ NIfTI.NIVolume{Float32, 4, Array{Float32, 4}} ├─ File name = /home/pkgeval/.julia/packages/Tractography/93EPl/test/../examples/fod-FC.nii.gz ├─ lmax (SH) = 8 ├─ Dimensions = (64, 64, 3, 45) ├─ Voxel size = (1.0f0, 3.0f0, 3.0f0, 3.0f0) ├─ Orientation = (:left, :posterior, :inferior) └─ Transform (s_row) = ⋯ kernel : 2.358994 seconds (1.01 M allocations: 54.386 MiB, 99.98% compilation time) kernel : 1.778173 seconds (376.28 k allocations: 20.811 MiB, 0.86% gc time, 99.99% compilation time) kernel : 2.237526 seconds (394.95 k allocations: 21.549 MiB, 99.99% compilation time) kernel : 2.115456 seconds (395.21 k allocations: 21.568 MiB, 99.99% compilation time) kernel-Diffusion: 3.919701 seconds (2.49 M allocations: 125.056 MiB, 0.82% gc time, 99.99% compilation time) kernel-Diffusion: 1.560671 seconds (504.87 k allocations: 26.619 MiB, 1.75% gc time, 99.99% compilation time) kernel-Diffusion: 1.800583 seconds (525.89 k allocations: 28.144 MiB, 99.99% compilation time) ThreadedCache (subset) ├─ size : 0.019 GiB ├─ ∂θodf : Array{Float32, 4} └─── size = (0, 0, 0, 0) ├─ ∂ϕodf : Array{Float32, 4} └─── size = (0, 0, 0, 0) └─ odf : Array{Float32, 4} └─── size = (401, 64, 64, 3) TMCCache (subset) ├─ size : 0.019 GiB ├─ dΩ::Float32 : 0.03133758 ├─ Yₗₘ : Matrix{Float32} ├─ ∂θodf : Nothing ├─ ∂ϕodf : Nothing └─ odf : Array{Float32, 4} └─── size = (401, 64, 64, 3) ThreadedCache (subset) ├─ size : 0.056 GiB ├─ ∂θodf : Array{Float32, 4} └─── size = (401, 64, 64, 3) ├─ ∂ϕodf : Array{Float32, 4} └─── size = (401, 64, 64, 3) └─ odf : Array{Float32, 4} └─── size = (401, 64, 64, 3) Diffusion [Float32] sampling algorithm ├─ adaptive = false ├─ alg = nothing ├─ γ = 1.0 └─ γ_noise = 1.0 NIfTI.NIVolume{Float32, 4, Array{Float32, 4}} ├─ File name = /home/pkgeval/.julia/packages/Tractography/93EPl/test/../examples/fod-FC.nii.gz ├─ lmax (SH) = 8 ├─ Dimensions = (64, 64, 3, 45) ├─ Voxel size = (1.0f0, 3.0f0, 3.0f0, 3.0f0) ├─ Orientation = (:left, :posterior, :inferior) └─ Transform (s_row) = ⋯ 4×4 SMatrix{4, 4, Float32, 16} with indices SOneTo(4)×SOneTo(4): 3.0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 0.0 0.0 1.0 Test Summary: | Pass Total Time Tractography.jl | 31 31 2m30.1s Testing Tractography tests passed Testing completed after 169.88s PkgEval succeeded after 273.42s