Package evaluation to test RheaMetacycParser on Julia 1.13.0-DEV.1319 (9cddfda8ef*) started at 2025-10-16T18:23:25.498 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.81s ################################################################################ # Installation # Installing RheaMetacycParser... Resolving package versions... Installed Bzip2_jll ───────────── v1.0.9+0 Installed libaec_jll ──────────── v1.1.4+0 Installed ReadableRegex ───────── v0.3.2 Installed DiffResults ─────────── v1.1.0 Installed MacroTools ──────────── v0.5.16 Installed DataStructures ──────── v0.19.1 Installed ForwardDiff ─────────── v1.2.2 Installed SBML ────────────────── v1.4.4 Installed CodecZlib ───────────── v0.7.8 Installed MicrosoftMPI_jll ────── v10.1.4+3 Installed MPICH_jll ───────────── v4.3.1+0 Installed Compat ──────────────── v4.18.1 Installed OrderedCollections ──── v1.8.1 Installed TranscodingStreams ──── v0.11.3 Installed Statistics ──────────── v1.11.1 Installed PrecompileTools ─────── v1.3.3 Installed Xorg_libpciaccess_jll ─ v0.18.1+0 Installed CommonSubexpressions ── v0.3.1 Installed StaticArraysCore ────── v1.4.3 Installed IrrationalConstants ─── v0.2.6 Installed NaNMath ─────────────── v1.1.3 Installed CodecBzip2 ──────────── v0.8.5 Installed JSON3 ───────────────── v1.14.3 Installed OpenSpecFun_jll ─────── v0.5.6+0 Installed Requires ────────────── v1.3.1 Installed SBML_jll ────────────── v5.20.1+0 Installed HDF5_jll ────────────── v1.14.6+0 Installed StableRNGs ──────────── v1.0.3 Installed LogExpFunctions ─────── v0.3.29 Installed OpenMPI_jll ─────────── v5.0.8+0 Installed DiffRules ───────────── v1.15.1 Installed Parsers ─────────────── v2.8.3 Installed BufferedStreams ─────── v1.2.2 Installed Hwloc_jll ───────────── v2.12.2+0 Installed JSON ────────────────── v0.21.4 Installed IfElse ──────────────── v0.1.1 Installed XML2_jll ────────────── v2.13.9+0 Installed Unitful ─────────────── v1.25.0 Installed JuMP ────────────────── v1.29.1 Installed SpecialFunctions ────── v2.6.1 Installed COBREXA ─────────────── v1.5.1 Installed Preferences ─────────── v1.5.0 Installed MutableArithmetics ──── v1.6.6 Installed PikaParser ──────────── v0.5.2 Installed MPIPreferences ──────── v0.1.11 Installed Libiconv_jll ────────── v1.18.0+0 Installed JLLWrappers ─────────── v1.7.1 Installed BenchmarkTools ──────── v1.6.1 Installed HDF5 ────────────────── v0.16.16 Installed StructTypes ─────────── v1.11.0 Installed MPItrampoline_jll ───── v5.5.4+0 Installed DocStringExtensions ─── v0.9.5 Installed RheaMetacycParser ───── v0.1.0 Installed DistributedData ─────── v0.2.0 Installed MAT ─────────────────── v0.10.7 Installed MathOptInterface ────── v1.45.0 Installing 10 artifacts Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact libaec 49.6 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Libiconv 1.9 MiB Installed artifact XML2 2.5 MiB Installed artifact Hwloc 3.5 MiB Installed artifact MPICH 3.3 MiB Installed artifact HDF5 5.7 MiB Installed artifact SBML 5.8 MiB Updating `~/.julia/environments/v1.13/Project.toml` [5dc06827] + RheaMetacycParser v0.1.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [6e4b80f9] + BenchmarkTools v1.6.1 [e1450e63] + BufferedStreams v1.2.2 ⌅ [babc4406] + COBREXA v1.5.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [864edb3b] + DataStructures v0.19.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [f6a0035f] + DistributedData v0.2.0 [ffbed154] + DocStringExtensions v0.9.5 [f6369f11] + ForwardDiff v1.2.2 ⌅ [f67ccb44] + HDF5 v0.16.16 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [4076af6c] + JuMP v1.29.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.45.0 [d8a4904e] + MutableArithmetics v1.6.6 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 ⌅ [3bbf5609] + PikaParser v0.5.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [cbbcb084] + ReadableRegex v0.3.2 [ae029012] + Requires v1.3.1 [5dc06827] + RheaMetacycParser v0.1.0 ⌅ [e5567a89] + SBML v1.4.4 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.3 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [856f2bd8] + StructTypes v1.11.0 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.25.0 [6e34b625] + Bzip2_jll v1.0.9+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [bb12108a] + SBML_jll v5.20.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log` Installation completed after 23.5s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4909.4 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 55.69s ################################################################################ # Testing # Testing RheaMetacycParser Status `/tmp/jl_J5ZfJD/Project.toml` ⌅ [babc4406] COBREXA v1.5.1 [ffbed154] DocStringExtensions v0.9.5 [cbbcb084] ReadableRegex v0.3.2 [5dc06827] RheaMetacycParser v0.1.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_J5ZfJD/Manifest.toml` [6e4b80f9] BenchmarkTools v1.6.1 [e1450e63] BufferedStreams v1.2.2 ⌅ [babc4406] COBREXA v1.5.1 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [864edb3b] DataStructures v0.19.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [f6a0035f] DistributedData v0.2.0 [ffbed154] DocStringExtensions v0.9.5 [f6369f11] ForwardDiff v1.2.2 ⌅ [f67ccb44] HDF5 v0.16.16 [615f187c] IfElse v0.1.1 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [4076af6c] JuMP v1.29.1 [2ab3a3ac] LogExpFunctions v0.3.29 [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.45.0 [d8a4904e] MutableArithmetics v1.6.6 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 ⌅ [3bbf5609] PikaParser v0.5.2 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [cbbcb084] ReadableRegex v0.3.2 [ae029012] Requires v1.3.1 [5dc06827] RheaMetacycParser v0.1.0 ⌅ [e5567a89] SBML v1.4.4 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.3 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [856f2bd8] StructTypes v1.11.0 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.25.0 [6e34b625] Bzip2_jll v1.0.9+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [bb12108a] SBML_jll v5.20.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Unitful/HCJFR/src/logarithm.jl:127:5 Base. *(::MixedUnits, ::MixedUnits) = # └───────────────────────────────┘ ── extra tokens after end of expression Stacktrace: [1] top-level scope @ ~/.julia/packages/Unitful/HCJFR/src/logarithm.jl:127 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [3] top-level scope @ ~/.julia/packages/Unitful/HCJFR/src/Unitful.jl:67 [4] include(mod::Module, _path::String) @ Base ./Base.jl:309 [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [7] macro expansion @ ./loading.jl:2464 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [10] require @ ./loading.jl:2404 [inlined] [11] eval_import_path @ ./module.jl:36 [inlined] [12] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [13] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [14] top-level scope @ ~/.julia/packages/SBML/wqJog/src/SBML.jl:11 [15] include(mod::Module, _path::String) @ Base ./Base.jl:309 [16] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [17] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [18] macro expansion @ ./loading.jl:2464 [inlined] [19] macro expansion @ ./lock.jl:376 [inlined] [20] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [21] require @ ./loading.jl:2404 [inlined] [22] eval_import_path @ ./module.jl:36 [inlined] [23] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [24] top-level scope @ ~/.julia/packages/COBREXA/IheBW/src/COBREXA.jl:47 [25] include(mod::Module, _path::String) @ Base ./Base.jl:309 [26] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [27] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [28] macro expansion @ ./loading.jl:2464 [inlined] [29] macro expansion @ ./lock.jl:376 [inlined] [30] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [31] require @ ./loading.jl:2404 [inlined] [32] eval_import_path @ ./module.jl:36 [inlined] [33] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [34] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [35] top-level scope @ ~/.julia/packages/RheaMetacycParser/EFHMJ/src/RheaMetacycParser.jl:3 [36] include(mod::Module, _path::String) @ Base ./Base.jl:309 [37] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [38] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [39] macro expansion @ ./loading.jl:2464 [inlined] [40] macro expansion @ ./lock.jl:376 [inlined] [41] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [42] require @ ./loading.jl:2404 [inlined] [43] eval_import_path @ ./module.jl:36 [inlined] [44] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [45] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [46] top-level scope @ ~/.julia/packages/RheaMetacycParser/EFHMJ/test/runtests.jl:1 [47] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [48] top-level scope @ none:6 [49] eval(m::Module, e::Any) @ Core ./boot.jl:489 [50] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [51] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Unitful/HCJFR/src/logarithm.jl:127 in expression starting at /home/pkgeval/.julia/packages/Unitful/HCJFR/src/Unitful.jl:1 in expression starting at /home/pkgeval/.julia/packages/SBML/wqJog/src/SBML.jl:1 in expression starting at /home/pkgeval/.julia/packages/COBREXA/IheBW/src/COBREXA.jl:1 in expression starting at /home/pkgeval/.julia/packages/RheaMetacycParser/EFHMJ/src/RheaMetacycParser.jl:1 in expression starting at /home/pkgeval/.julia/packages/RheaMetacycParser/EFHMJ/test/runtests.jl:1 Testing failed after 359.08s ERROR: LoadError: Package RheaMetacycParser errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2674 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2523 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:525 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 498.19s: package tests unexpectedly errored