Package evaluation to test MCPhylo on Julia 1.13.0-DEV.1319 (9cddfda8ef*) started at 2025-10-17T01:33:20.708 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.92s ################################################################################ # Installation # Installing MCPhylo... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [af0ac7d2] + MCPhylo v0.9.5 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 ⌅ [ec485272] + ArnoldiMethod v0.1.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.21.0 [a9b6321e] + Atomix v1.1.2 [13072b0f] + AxisAlgorithms v1.1.0 ⌅ [76274a88] + Bijectors v0.10.8 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [9e997f8a] + ChangesOfVariables v0.1.10 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [c87230d0] + FFMPEG v0.4.4 [7a1cc6ca] + FFTW v1.10.0 [1a297f60] + FillArrays v1.14.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 ⌅ [d9f16b24] + Functors v0.3.0 [0c68f7d7] + GPUArrays v11.2.6 [46192b85] + GPUArraysCore v0.2.0 [28b8d3ca] + GR v0.73.17 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [a98d9a8b] + Interpolations v0.16.2 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.1.0 [63c18a36] + KernelAbstractions v0.9.38 [5ab0869b] + KernelDensity v0.6.10 [929cbde3] + LLVM v9.4.4 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [093fc24a] + LightGraphs v1.3.5 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [bdcacae8] + LoopVectorization v0.12.173 [af0ac7d2] + MCPhylo v0.9.5 [e53f0ae0] + MCPhyloTree v1.1.7 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.2 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.2 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.3 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.3 [91a5bcdd] + Plots v1.41.1 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [37e2e3b7] + ReverseDiff v1.16.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.10 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [431bcebd] + SciMLPublic v1.0.0 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [992d4aef] + Showoff v1.0.3 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.3 [aedffcd0] + Static v1.3.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.0 [f3b207a7] + StatsPlots v0.15.8 [09ab397b] + StructArrays v0.7.1 [ec057cc2] + StructUtils v2.5.1 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [8290d209] + ThreadingUtilities v0.5.5 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [013be700] + UnsafeAtomics v0.3.0 [41fe7b60] + Unzip v0.2.0 [3d5dd08c] + VectorizationBase v0.21.72 [cc8bc4a8] + Widgets v0.6.7 [efce3f68] + WoodburyMatrices v1.0.0 ⌅ [e88e6eb3] + Zygote v0.6.77 [700de1a5] + ZygoteRules v0.2.7 ⌅ [68821587] + Arpack_jll v3.5.1+1 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.1+0 [b22a6f82] + FFMPEG_jll v7.1.1+0 [f5851436] + FFTW_jll v3.3.11+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [0656b61e] + GLFW_jll v3.4.0+2 [d2c73de3] + GR_jll v0.73.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [61579ee1] + Ghostscript_jll v9.55.1+0 [7746bdde] + Glib_jll v2.86.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.0.1+0 [dad2f222] + LLVMExtra_jll v0.0.38+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [856f044c] + MKL_jll v2025.2.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.10+0 [e7412a2a] + Ogg_jll v1.3.6+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.5.2+0 [36c8627f] + Pango_jll v1.56.4+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [c0090381] + Qt6Base_jll v6.8.2+2 [629bc702] + Qt6Declarative_jll v6.8.2+1 [ce943373] + Qt6ShaderTools_jll v6.8.2+1 [e99dba38] + Qt6Wayland_jll v6.8.2+2 [f50d1b31] + Rmath_jll v0.5.1+0 [a44049a8] + Vulkan_Loader_jll v1.3.243+0 [a2964d1f] + Wayland_jll v1.24.0+0 [ffd25f8a] + XZ_jll v5.8.1+0 [f67eecfb] + Xorg_libICE_jll v1.1.2+0 [c834827a] + Xorg_libSM_jll v1.2.6+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.6+0 [12413925] + Xorg_xcb_util_image_jll v0.4.1+0 [2def613f] + Xorg_xcb_util_jll v0.4.1+0 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.1+0 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.10+0 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.2+0 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [35ca27e7] + eudev_jll v3.2.14+0 [214eeab7] + fzf_jll v0.61.1+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [2db6ffa8] + libevdev_jll v1.13.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [36db933b] + libinput_jll v1.28.1+0 [b53b4c65] + libpng_jll v1.6.50+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [009596ad] + mtdev_jll v1.1.7+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.9.2+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 9.23s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 311.66s ################################################################################ # Testing # Testing MCPhylo Status `/tmp/jl_45sL8m/Project.toml` ⌅ [76274a88] Bijectors v0.10.8 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [31c24e10] Distributions v0.25.122 [6a86dc24] FiniteDiff v2.29.0 ⌅ [f6369f11] ForwardDiff v0.10.39 [615f187c] IfElse v0.1.1 [093fc24a] LightGraphs v1.3.5 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.173 [af0ac7d2] MCPhylo v0.9.5 [e53f0ae0] MCPhyloTree v1.1.7 [90014a1f] PDMats v0.11.35 [91a5bcdd] Plots v1.41.1 [92933f4c] ProgressMeter v1.11.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [37e2e3b7] ReverseDiff v1.16.1 [992d4aef] Showoff v1.0.3 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.0 [f3b207a7] StatsPlots v0.15.8 ⌅ [e88e6eb3] Zygote v0.6.77 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_45sL8m/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 ⌅ [ec485272] ArnoldiMethod v0.1.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.21.0 [a9b6321e] Atomix v1.1.2 [13072b0f] AxisAlgorithms v1.1.0 ⌅ [76274a88] Bijectors v0.10.8 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [9e997f8a] ChangesOfVariables v0.1.10 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes 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Testing Running tests... Running tests: >>> Testing distributions/phylodist.jl ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 >>> Testing distributions/treeconstraints.jl ┌ Warning: Skipped line with unsupported constraint type 'AbstractString["test", ""][1]'. │ Allowed types are 'mono', 'not_mono' and 'exc' └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/distributions/TreeConstraints.jl:162 ┌ Warning: Some trivial 'mono' / 'not_mono' type constraints were removed. │ A valid 'mono' / 'not_mono' constraint needs at least 2 elements. └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/distributions/TreeConstraints.jl:31 ┌ Warning: Some trivial 'exc' type constraints were removed. │ A non-trivial 'exc' constraints needs at least 2 elements in the first, and at least 1 in the second part of the tuple └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/distributions/TreeConstraints.jl:35 >>> Testing distributions/treedists.jl >>> Testing likelihood/rates.jl >>> Testing likelihood/substitutionmodels.jl >>> Testing likelihood/felsenstein.jl ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 >>> Testing mcmc/discretediag.jl >>> Testing mcmc/modelbuilding.jl >>> Testing model/dependent.jl >>> Testing model/variate.jl >>> Testing output/asdsf.jl >>> Testing output/chains.jl >>> Testing output/gelman.jl >>> Testing parser/csv.jl >>> Testing parser/nexus.jl ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 >>> Testing parser/parser.jl ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 >>> Testing samplers/sampler_construction.jl >>> Testing samplers/linear_model_uvp.jl >>> Testing samplers/linear_model_mvp.jl >>> Testing samplers/tree_samplers.jl ┌ Warning: Keyword datatype not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: Keyword interleave not understood, will be ignored └ @ MCPhylo ~/.julia/packages/MCPhylo/KWPlY/src/Parser/ParseNexus.jl:92 ┌ Warning: `Progress(n::Integer, desc::AbstractString, offset::Integer = 0; kwargs...)` is deprecated, use `Progress(n; desc = desc, offset = offset, kwargs...)` instead. │ caller = ip:0x0 └ @ Core :-1 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 95 running 1 of 1 signal (10): User defined signal 1 unknown function (ip: 0x72003ef13ec2) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] jl_f__apply_iterate at /source/src/builtins.c:876 macro expansion at /home/pkgeval/.julia/packages/LoopVectorization/GKxH5/src/condense_loopset.jl:1179 [inlined] FelsensteinFunction at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/Likelihood/LikelihoodCalculator_Node.jl:39 gradlogpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/distributions/Phylodist.jl:136 gradlogpdf_sub at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/distributions/distributionstruct.jl:157 [inlined] gradlogpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/dependent.jl:556 [inlined] gradlogpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/dependent.jl:548 unknown function (ip: 0x72003ea945fc) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 gradlogpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/simulation.jl:220 logpdfgrad! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/sampler.jl:184 logpdfgrad! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/sampler.jl:94 [inlined] grlpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/simulation.jl:345 [inlined] refraction! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/tree_hamiltonian/refraction.jl:22 #sample!#278 at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/pphmc.jl:104 sample! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/pphmc.jl:75 [inlined] sample! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/simulation.jl:347 unknown function (ip: 0x72003e928936) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 sample! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/simulation.jl:328 mcmc_worker! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:231 mcmc_worker! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:194 [inlined] mcmc_or_convergence at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/utils.jl:219 [inlined] iterate at ./generator.jl:48 [inlined] collect_to! at ./array.jl:886 collect_to_with_first! at ./array.jl:864 [inlined] _collect at ./array.jl:858 collect_similar at ./array.jl:763 [inlined] map at ./abstractarray.jl:3390 [inlined] pmap2 at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/utils.jl:93 unknown function (ip: 0x72003eb2e703) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/utils.jl:179 [inlined] macro expansion at ./task.jl:633 [inlined] assign_mcmc_work at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/utils.jl:172 #mcmc_master!#48 at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:166 mcmc_master! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:135 [inlined] #mcmc#47 at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:123 mcmc at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:75 unknown function (ip: 0x72003ea70c5c) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2954 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3014 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x7200588d3322) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/utils.jl:5 [inlined] macro expansion at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/runtests.jl:94 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] macro expansion at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/runtests.jl:93 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] top-level scope at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/runtests.jl:56 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_invoke at /source/src/gf.c:4123 jl_toplevel_eval_flex at /source/src/toplevel.c:731 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2954 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3014 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_59871.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_71179.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x72005a23c249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1217 wait_forever at ./task.jl:1139 jfptr_wait_forever_42350.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000075f57c1a2950 Total snapshots: 446. Utilization: 0% ╎446 @Base/task.jl:1139 wait_forever() 445╎ 446 @Base/task.jl:1217 wait() ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007200401fc010 Total snapshots: 148. Utilization: 100% ╎147 @Base/client.jl:577 _start() ╎ 147 @Base/client.jl:310 exec_options(opts::Base.JLOptions) ╎ 147 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 147 @Base/Base.jl:311 (::Base.IncludeInto)(fname::String) ╎ 147 @Base/Base.jl:310 include(mapexpr::Function, mod::Module, _path::St… ╎ 147 @Base/loading.jl:3014 _include(mapexpr::Function, mod::Module, _pa… ╎ ╎ 147 @Base/loading.jl:2954 include_string(mapexpr::typeof(identity), m… ╎ ╎ 147 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 147 @MCPhylo/…runtests.jl:56 top-level scope ╎ ╎ 147 @Test/src/Test.jl:1961 macro expansion ╎ ╎ 147 @MCPhylo/…untests.jl:93 macro expansion ╎ ╎ ╎ 147 @Test/src/Test.jl:1961 macro expansion ╎ ╎ ╎ 147 @MCPhylo/…ntests.jl:94 macro expansion ╎ ╎ ╎ 147 @MCPhylo/…/utils.jl:5 macro expansion ╎ ╎ ╎ 147 @Base/Base.jl:311 (::Base.IncludeInto)(fname::String) ╎ ╎ ╎ 147 @Base/Base.jl:310 include(mapexpr::Function, mod::Module… ╎ ╎ ╎ ╎ 147 @Base/loading.jl:3014 _include(mapexpr::Function, mod::… ╎ ╎ ╎ ╎ 147 @Base/loading.jl:2954 include_string(mapexpr::typeof(i… ╎ ╎ ╎ ╎ 147 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ ╎ ╎ 147 @MCPhylo/…cmc.jl:75 kwcall(::@NamedTuple{burnin::Int… ╎ ╎ ╎ ╎ 147 @MCPhylo/…cmc.jl:123 mcmc(m::Model, inputs::Dict{Sy… ╎ ╎ ╎ ╎ ╎ 147 @MCPhylo/…mc.jl:135 mcmc_master! ╎ ╎ ╎ ╎ ╎ 147 @MCPhylo/…mc.jl:166 mcmc_master!(m::Model, window… ╎ ╎ ╎ ╎ ╎ 147 @MCPhylo/…s.jl:172 assign_mcmc_work(f::Function,… ╎ ╎ ╎ ╎ ╎ 147 @Base/task.jl:633 macro expansion ╎ ╎ ╎ ╎ ╎ 147 @MCPhylo/…s.jl:179 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ 147 @MCPhylo/…s.jl:93 pmap2(f::typeof(MCPhylo.mcm… ╎ ╎ ╎ ╎ ╎ ╎ 147 @Base/…ay.jl:3390 map ╎ ╎ ╎ ╎ ╎ ╎ 147 @Base/…ay.jl:763 collect_similar ╎ ╎ ╎ ╎ ╎ ╎ 147 @Base/…ay.jl:858 _collect(c::Vector{Vector… ╎ ╎ ╎ ╎ ╎ ╎ 147 @Base/…ay.jl:864 collect_to_with_first! ╎ ╎ ╎ ╎ ╎ ╎ ╎ 147 @Base/…ay.jl:886 collect_to!(dest::Vecto… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 147 @Base/…or.jl:48 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ 147 @MCPhylo/…jl:219 mcmc_or_convergence ╎ ╎ ╎ ╎ ╎ ╎ ╎ 147 @MCPhylo/…jl:194 mcmc_worker! ╎ ╎ ╎ ╎ ╎ ╎ ╎ 146 @MCPhylo/…jl:231 mcmc_worker!(args::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 146 @MCPhylo/…jl:328 sample!(m::Model) ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 146 @MCPhylo/…jl:347 sample!(s::Sample… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 140 @MCPhylo/…jl:75 sample! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 14 @MCPhylo/…jl:92 sample!(v::Sampl… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 14 @MCPhylo/…jl:345 grlpdf ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 14 @MCPhylo/…jl:94 logpdfgrad! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 14 @MCPhylo/…jl:184 logpdfgrad!(::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 14 @MCPhylo/…jl:220 gradlogpdf(m::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 14 @MCPhylo/…jl:548 gradlogpdf(s::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 14 @MCPhylo/…jl:556 gradlogpdf ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 14 @MCPhylo/…jl:157 gradlogpdf_sub ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 14 @MCPhylo/…jl:136 gradlogpdf(d::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 @MCPhylo/…jl:11 FelsensteinFunc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @MCPhylo/…jl:99 FelsensteinFunc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 @Base/…ws.jl:235 maybeview ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 @MCPhyloTree/…:7 getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 1 @Base/…ay.jl:838 collect(itr::B… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 @Base/…ay.jl:864 collect_to_wit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @Base/…ay.jl:886 collect_to!(de… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 @Base/…or.jl:48 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 1 none:? #15 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 1 @MCPhyloTree/…:13 getindex(n::P… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 1 @AbstractTrees/…:75 iterate(ti:… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 1 @AbstractTrees/…:188 next(s::Ab… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 3 @MCPhylo/…jl:28 FelsensteinFunc… 2╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 3 @LoopVectorization/…:1179 macro… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 @LoopVectorization/…:389 gespf1 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 8 @MCPhylo/…jl:39 FelsensteinFunc… 8╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 8 @LoopVectorization/…:1179 macro… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 @MCPhylo/…jl:51 FelsensteinFunc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @Base/…ay.jl:1360 getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 @Base/…al.jl:984 _getindex(::In… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 @Base/…al.jl:998 _unsafe_getind… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 1 @Base/…al.jl:1017 _unsafe_getin… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 @Base/…al.jl:1007 macro expansi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @Base/…an.jl:65 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 @Base/…al.jl:1009 macro expansi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 1 @Base/…ay.jl:1020 setindex! 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 1 @Base/…ay.jl:1025 _setindex! 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 @MCPhylo/…jl:64 FelsensteinFunc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @MCPhylo/…jl:94 sample!(v::Sampl… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…py.jl:34 deepcopy ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Base/…py.jl:74 deepcopy_intern… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 @Base/…py.jl:133 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 1 @Base/…py.jl:142 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 1 @Base/…py.jl:104 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 1 @Base/…py.jl:120 _deepcopy_memo… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 1 @Base/…py.jl:74 deepcopy_intern… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 1 @Base/…py.jl:133 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 @Base/…py.jl:142 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @Base/…py.jl:104 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 @Base/…py.jl:120 _deepcopy_memo… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 @Base/…py.jl:74 deepcopy_intern… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 1 @Base/…py.jl:133 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 @Base/…py.jl:142 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @Base/…py.jl:104 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 @Base/…py.jl:120 _deepcopy_memo… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 1 @Base/…py.jl:74 deepcopy_intern… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 1 @Base/…py.jl:133 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 1 @Base/…py.jl:142 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 1 @Base/…py.jl:104 deepcopy_inter… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +20 1 @Base/…py.jl:122 _deepcopy_memo… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 125 @MCPhylo/…jl:104 sample!(v::Samp… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 124 @MCPhylo/…jl:22 refraction!(s::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 124 @MCPhylo/…jl:345 grlpdf ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 124 @MCPhylo/…jl:94 logpdfgrad! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 121 @MCPhylo/…jl:184 logpdfgrad!(::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 121 @MCPhylo/…jl:220 gradlogpdf(m::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 121 @MCPhylo/…jl:548 gradlogpdf(s::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 121 @MCPhylo/…jl:556 gradlogpdf ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 121 @MCPhylo/…jl:157 gradlogpdf_sub ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 @MCPhylo/…jl:129 gradlogpdf(d::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @Base/…ay.jl:825 collect ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 @Base/…ay.jl:901 grow_to!(dest:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 @Base/…or.jl:45 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 1 @AbstractTrees/…:74 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 @AbstractTrees/…:75 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @AbstractTrees/…:236 next(s::Ab… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 @AbstractTrees/…:182 nextsiblin… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 7 @MCPhylo/…jl:130 gradlogpdf(d::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 7 @Base/…py.jl:34 deepcopy ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 7 @Base/…py.jl:133 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 7 @Base/…py.jl:142 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 7 @Base/…py.jl:104 deepcopy_inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 7 @Base/…py.jl:109 _deepcopy_memo… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 7 @Base/…ry.jl:193 copy(a::Memory… 7╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 7 @Base/…ot.jl:588 GenericMemory 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 113 @MCPhylo/…jl:136 gradlogpdf(d::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 4 @MCPhylo/…jl:11 FelsensteinFunc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 3 @MCPhylo/…jl:94 FelsensteinFunc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 3 @Base/…ws.jl:235 maybeview ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 3 @MCPhyloTree/…:13 getindex(n::P… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 3 @AbstractTrees/…:75 iterate(ti:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @AbstractTrees/…:183 next(s::Ab… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 @AbstractTrees/…:183 nextsiblin… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @AbstractTrees/…:185 next(s::Ab… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @AbstractTrees/…:188 next(s::Ab… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 @MCPhylo/…jl:99 FelsensteinFunc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 @Base/…ws.jl:235 maybeview ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 1 @MCPhyloTree/…:7 getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 @Base/…ay.jl:838 collect(itr::B… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @Base/…ay.jl:864 collect_to_wit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 @Base/…ay.jl:886 collect_to!(de… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 1 @Base/…or.jl:48 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 1 none:? #15 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 1 @MCPhyloTree/…:13 getindex(n::P… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 1 @AbstractTrees/…:75 iterate(ti:… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +20 1 @AbstractTrees/…:185 next(s::Ab… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 3 @MCPhylo/…jl:18 FelsensteinFunc… 3╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 3 @LoopVectorization/…:1179 macro… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 32 @MCPhylo/…jl:28 FelsensteinFunc… 27╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 32 @LoopVectorization/…:1179 macro… 5╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 5 @LoopVectorization/…:389 gespf1 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @MCPhylo/…jl:37 FelsensteinFunc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 @MCPhylo/…jl:171 turbo_mul!(dat… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 @LoopVectorization/…:1179 macro… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 1 @LoopVectorization/…:1107 _turb… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 @LoopVectorization/…:1107 macro… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @VectorizationBase/…:91 mul_fast ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 @VectorizationBase/…:115 vmul_f… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 1 @VectorizationBase/…:115 macro … ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 42 @MCPhylo/…jl:39 FelsensteinFunc… 39╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 42 @LoopVectorization/…:1179 macro… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 2 @LoopVectorization/…:497 densew… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 2 @LoopVectorization/…:502 _dense… 2╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 2 @LayoutPointers/…:42 DensePoint… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 5 @MCPhylo/…jl:51 FelsensteinFunc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 5 @Base/…ay.jl:1360 getindex 2╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 2 @Base/…al.jl:982 _getindex(::In… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 3 @Base/…al.jl:983 _getindex(::In… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 2 @Base/…ay.jl:702 checkbounds(::… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 @Base/…ay.jl:684 checkbounds(::… 16╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 23 @MCPhylo/…jl:64 FelsensteinFunc… 7╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 7 @Base/…er.jl:57 getproperty(x::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @MCPhylo/…jl:66 FelsensteinFunc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 @Base/…ay.jl:963 getindex 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 @Base/…ls.jl:965 getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @MCPhylo/…jl:72 FelsensteinFunc… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 @MCPhylo/…jl:0 bymax!(pre_order… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 3 @MCPhylo/…jl:187 logpdfgrad!(::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 3 @MCPhylo/…jl:552 gradlogpdf(s::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 3 @MCPhylo/…jl:552 gradlogpdf ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 3 @MCPhylo/…jl:113 gradlogpdf(d::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 3 @MCPhylo/…jl:46 gradlogpdf ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 3 @Zygote/….jl:0 withgradient(f::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 3 @Zygote/….jl:91 (::Zygote.var"#… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 3 @Zygote/….jl:110 (::Zygote.Pull… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 2 @Zygote/….jl:0 (::Zygote.Pullba… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 2 @MCPhylo/…jl:35 internal_logpdf 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 @Zygote/….jl:110 (::Zygote.Pull… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 @Zygote/….jl:22 accum(::@NamedT… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @Zygote/….jl:22 accum(::@NamedT… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 @Zygote/….jl:22 accum(::@NamedT… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 1 @Zygote/….jl:22 accum(::@NamedT… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 1 @Zygote/….jl:22 accum(::@NamedT… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 1 @Zygote/….jl:22 accum(::@NamedT… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 1 @Zygote/….jl:22 accum(::@NamedT… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +20 1 @Zygote/….jl:22 accum(::@NamedT… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +21 1 @Zygote/….jl:22 accum(::@NamedT… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +22 1 @Zygote/….jl:22 accum(::@NamedT… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +23 1 @Zygote/….jl:22 accum(::@NamedT… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 @Zygote/….jl:110 (::Zygote.Pull… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @MCPhylo/…jl:28 refraction!(s::… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Base/…er.jl:61 setproperty!(x:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 6 @MCPhylo/…jl:79 sample! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @MCPhylo/…jl:82 sample!(v::Sampl… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @MCPhylo/…jl:341 lpdf ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 2 @MCPhylo/…jl:194 logpdf! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 2 @MCPhylo/…jl:270 logpdf!(m::Mod… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 2 @MCPhylo/…jl:515 logpdf(s::Stoc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 2 @MCPhylo/…jl:515 logpdf ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 2 @MCPhylo/…jl:564 logpdf ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 2 @MCPhylo/…jl:122 logpdf_sub ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 1 @MCPhylo/…jl:116 logpdf(d::Phyl… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 @Base/…ay.jl:530 last ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @MCPhyloTree/…:13 getindex(n::P… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 @AbstractTrees/…:75 iterate(ti:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 @AbstractTrees/…:188 next(s::Ab… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 1 @AbstractTrees/…:176 descendleft ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 @Base/…ls.jl:1120 isempty ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @AbstractTrees/…:167 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 @AbstractTrees/…:169 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 1 @Base/…ay.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 1 @Base/…ay.jl:1245 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 1 @Base/…ay.jl:1253 _iterate_abst… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +19 1 @Base/…ls.jl:965 getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 1 @MCPhylo/…jl:121 logpdf(d::Phyl… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 @MCPhylo/…jl:103 FelsensteinFun… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @MCPhylo/…jl:47 by_max!(data::A… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @MCPhylo/…jl:85 sample!(v::Sampl… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @MCPhylo/…jl:103 makefirstsimpl… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Base/…st.jl:893 materialize ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 @Base/…st.jl:918 copy ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 1 @Base/…st.jl:227 similar ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 1 @Base/…st.jl:228 similar ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 1 @Base/…ay.jl:876 similar ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 1 @Base/…ay.jl:409 similar ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 1 @Base/…ay.jl:877 similar ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 @Base/…ot.jl:669 Array ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @Base/…ot.jl:662 Array 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 @Base/…ot.jl:652 Array ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @MCPhylo/…jl:89 sample!(v::Sampl… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 3 @MCPhylo/…jl:341 lpdf ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 3 @MCPhylo/…jl:194 logpdf! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 3 @MCPhylo/…jl:270 logpdf!(m::Mod… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 3 @MCPhylo/…jl:515 logpdf(s::Stoc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 3 @MCPhylo/…jl:515 logpdf ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 3 @MCPhylo/…jl:564 logpdf ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 3 @MCPhylo/…jl:122 logpdf_sub ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 3 @MCPhylo/…jl:121 logpdf(d::Phyl… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 2 @MCPhylo/…jl:94 FelsensteinFunc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 2 @Base/…ws.jl:235 maybeview 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 2 @MCPhyloTree/…:13 getindex(n::P… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 @AbstractTrees/…:75 iterate(ti:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 1 @AbstractTrees/…:183 next(s::Ab… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 @AbstractTrees/…:183 nextsiblin… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @AbstractTrees/…:149 ImplicitCu… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 @MCPhylo/…jl:99 FelsensteinFunc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @Base/…ws.jl:235 maybeview ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +10 1 @MCPhyloTree/…:7 getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +11 1 @Base/…ay.jl:838 collect(itr::B… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +12 1 @Base/…ay.jl:864 collect_to_wit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +13 1 @Base/…ay.jl:886 collect_to!(de… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +14 1 @Base/…or.jl:48 iterate ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +15 1 none:? #15 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +16 1 @MCPhyloTree/…:13 getindex(n::P… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +17 1 @AbstractTrees/…:75 iterate(ti:… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +18 1 @AbstractTrees/…:188 next(s::Ab… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @MCPhylo/…jl:233 mcmc_worker!(args::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @MCPhylo/…jl:286 track(i::Int64, bu… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @MCPhylo/…jl:389 final_likelihood(… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @MCPhylo/…jl:469 update!(s::Stoch… [95] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/samplers/tree_samplers.jl:132 obviously_egal at /source/src/subtype.c:404 obviously_in_union at /source/src/subtype.c:538 obviously_in_union at /source/src/subtype.c:534 obviously_in_union at /source/src/subtype.c:534 obviously_in_union at /source/src/subtype.c:534 obviously_in_union at /source/src/subtype.c:534 subtype at /source/src/subtype.c:1419 exists_subtype at /source/src/subtype.c:1794 [inlined] forall_exists_subtype at /source/src/subtype.c:1823 ijl_subtype_env at /source/src/subtype.c:2282 subtype_tuple_tail at /source/src/subtype.c:1295 [inlined] subtype_tuple at /source/src/subtype.c:1377 [inlined] subtype at /source/src/subtype.c:1551 local_forall_exists_subtype at /source/src/subtype.c:1672 subtype_ccheck at /source/src/subtype.c:698 equal_var at /source/src/subtype.c:1721 forall_exists_equal at /source/src/subtype.c:1771 subtype at /source/src/subtype.c:1557 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1514 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1514 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1514 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1514 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1514 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1514 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1514 exists_subtype at /source/src/subtype.c:1794 [inlined] forall_exists_subtype at /source/src/subtype.c:1823 ijl_subtype_env at /source/src/subtype.c:2282 gespf1 at /home/pkgeval/.julia/packages/LoopVectorization/GKxH5/src/condense_loopset.jl:389 [inlined] macro expansion at /home/pkgeval/.julia/packages/LoopVectorization/GKxH5/src/condense_loopset.jl:1179 [inlined] FelsensteinFunction at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/Likelihood/LikelihoodCalculator_Node.jl:28 gradlogpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/distributions/Phylodist.jl:136 gradlogpdf_sub at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/distributions/distributionstruct.jl:157 [inlined] gradlogpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/dependent.jl:556 [inlined] gradlogpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/dependent.jl:548 unknown function (ip: 0x72003ea945fc) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 gradlogpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/simulation.jl:220 logpdfgrad! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/sampler.jl:184 logpdfgrad! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/sampler.jl:94 [inlined] grlpdf at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/simulation.jl:345 [inlined] #sample!#278 at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/pphmc.jl:92 sample! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/samplers/pphmc.jl:75 [inlined] sample! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/simulation.jl:347 unknown function (ip: 0x72003e928936) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 sample! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/simulation.jl:328 mcmc_worker! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:231 mcmc_worker! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:194 [inlined] mcmc_or_convergence at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/utils.jl:219 [inlined] iterate at ./generator.jl:48 [inlined] collect_to! at ./array.jl:886 collect_to_with_first! at ./array.jl:864 [inlined] _collect at ./array.jl:858 collect_similar at ./array.jl:763 [inlined] map at ./abstractarray.jl:3390 [inlined] pmap2 at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/utils.jl:93 unknown function (ip: 0x72003eb2e703) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/utils.jl:179 [inlined] macro expansion at ./task.jl:633 [inlined] assign_mcmc_work at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/utils.jl:172 #mcmc_master!#48 at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:166 mcmc_master! at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:135 [inlined] #mcmc#47 at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:123 mcmc at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/model/mcmc.jl:75 unknown function (ip: 0x72003ea70c5c) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2954 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3014 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x7200588d3322) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/utils.jl:5 [inlined] macro expansion at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/runtests.jl:94 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] macro expansion at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/runtests.jl:93 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] top-level scope at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/runtests.jl:56 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_invoke at /source/src/gf.c:4123 jl_toplevel_eval_flex at /source/src/toplevel.c:731 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2954 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3014 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_59871.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_71179.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x72005a23c249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 7809006869 (Pool: 7809001245; Big: 5624); GC: 4726 PkgEval terminated after 2724.91s: test duration exceeded the time limit