Package evaluation to test HiddenMarkovModels on Julia 1.13.0-DEV.1307 (5a5fc987d0*) started at 2025-10-16T14:44:15.888 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.9s ################################################################################ # Installation # Installing HiddenMarkovModels... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [84ca31d5] + HiddenMarkovModels v0.7.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [dce04be8] + ArgCheck v2.5.0 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [b429d917] + DensityInterface v0.4.0 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.14.0 [84ca31d5] + HiddenMarkovModels v0.7.0 [34004b35] + HypergeometricFunctions v0.3.28 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [21216c6a] + Preferences v1.5.0 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [276daf66] + SpecialFunctions v2.6.1 [82ae8749] + StatsAPI v1.7.1 [4c63d2b9] + StatsFuns v1.5.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 5.7s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 850.18s ################################################################################ # Testing # Testing HiddenMarkovModels Status `/tmp/jl_NB7JOJ/Project.toml` [4c88cf16] Aqua v0.8.14 [b0b7db55] ComponentArrays v0.15.29 [b429d917] DensityInterface v0.4.0 [31c24e10] Distributions v0.25.122 [e30172f5] Documenter v1.14.1 [7da242da] Enzyme v0.13.86 [f6369f11] ForwardDiff v1.2.2 [84ca31d5] HiddenMarkovModels v0.7.0 ⌃ [c3a54625] JET v0.10.6 [98e50ef6] JuliaFormatter v2.1.6 [aa2f6b4e] LogarithmicNumbers v1.4.1 [eff96d63] Measurements v2.14.0 [860ef19b] StableRNGs v1.0.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [e88e6eb3] Zygote v0.7.10 [37e2e46d] LinearAlgebra v1.13.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_NB7JOJ/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.21.0 [fa961155] CEnum v0.5.0 [49dc2e85] Calculus v0.5.2 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 ⌅ [da1fd8a2] CodeTracking v1.3.9 [944b1d66] CodecZlib v0.7.8 [a80b9123] CommonMark v0.9.1 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [b0b7db55] ComponentArrays v0.15.29 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [b429d917] DensityInterface v0.4.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [7da242da] Enzyme v0.13.86 [f151be2c] EnzymeCore v0.8.14 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.14.0 [f6369f11] ForwardDiff v1.2.2 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.7.2 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.3.1 [84ca31d5] HiddenMarkovModels v0.7.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 ⌃ [c3a54625] JET v0.10.6 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.1.0 [98e50ef6] JuliaFormatter v2.1.6 ⌃ [aa1ae85d] JuliaInterpreter v0.10.3 ⌅ [70703baa] JuliaSyntax v0.4.10 [929cbde3] LLVM v9.4.4 [0e77f7df] LazilyInitializedFields v1.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [aa2f6b4e] LogarithmicNumbers v1.4.1 ⌃ [6f1432cf] LoweredCodeUtils v3.4.2 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 [eff96d63] Measurements v2.14.0 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [d8793406] ObjectFile v0.5.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [431bcebd] SciMLPublic v1.0.0 [6c6a2e73] Scratch v1.3.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.3 [aedffcd0] Static v1.3.0 [0d7ed370] StaticArrayInterface v1.8.0 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [09ab397b] StructArrays v0.7.1 [53d494c1] StructIO v0.3.1 [ec057cc2] StructUtils v2.5.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [e689c965] Tracy v0.1.6 [3bb67fe8] TranscodingStreams v0.11.3 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [7cc45869] Enzyme_jll v0.0.203+1 [2e619515] Expat_jll v2.7.1+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.51.1+0 [dad2f222] LLVMExtra_jll v0.0.38+0 [ad6e5548] LibTracyClient_jll v0.9.1+6 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Resolving package versions... Updating `/tmp/jl_NB7JOJ/Project.toml` [619c5ee3] + HMMTest v0.1.0 `~/.julia/packages/HiddenMarkovModels/Kmgf4/libs/HMMTest` Updating `/tmp/jl_NB7JOJ/Manifest.toml` [6e4b80f9] + BenchmarkTools v1.6.1 [619c5ee3] + HMMTest v0.1.0 `~/.julia/packages/HiddenMarkovModels/Kmgf4/libs/HMMTest` [9abbd945] + Profile v1.11.0 Code linting: JET-test failed at /home/pkgeval/.julia/packages/JET/z9poX/src/JETBase.jl:1055 Expression: (JET.report_package)(HiddenMarkovModels; toplevel_logger = nothing, target_defined_modules = true) ═════ 45 toplevel errors found ═════ ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/HiddenMarkovModels.jl:12 │ ArgumentError: Package ArgCheck not found in current path. │ - Run `import Pkg; Pkg.add("ArgCheck")` to install the ArgCheck package. │ Stacktrace: │ [1] macro expansion │ @ ./loading.jl:2445 [inlined] │ [2] macro expansion │ @ ./lock.jl:376 [inlined] │ [3] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2428 │ [4] require │ @ ./loading.jl:2404 [inlined] │ [5] eval_import_path │ @ ./module.jl:36 [inlined] │ [6] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [7] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base ./module.jl:101 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/HiddenMarkovModels.jl:15 │ ArgumentError: Package ChainRulesCore not found in current path. │ - Run `import Pkg; Pkg.add("ChainRulesCore")` to install the ChainRulesCore package. │ Stacktrace: │ [1] macro expansion │ @ ./loading.jl:2445 [inlined] │ [2] macro expansion │ @ ./lock.jl:376 [inlined] │ [3] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2428 │ [4] require │ @ ./loading.jl:2404 [inlined] │ [5] eval_import_path │ @ ./module.jl:36 [inlined] │ [6] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [7] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base ./module.jl:101 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/HiddenMarkovModels.jl:17 │ ArgumentError: Package DocStringExtensions not found in current path. │ - Run `import Pkg; Pkg.add("DocStringExtensions")` to install the DocStringExtensions package. │ Stacktrace: │ [1] macro expansion │ @ ./loading.jl:2445 [inlined] │ [2] macro expansion │ @ ./lock.jl:376 [inlined] │ [3] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2428 │ [4] require │ @ ./loading.jl:2404 [inlined] │ [5] eval_import_path │ @ ./module.jl:36 [inlined] │ [6] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [7] _eval_using(to::Module, path::Expr) │ @ Base ./module.jl:137 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/HiddenMarkovModels.jl:18 │ ArgumentError: Package FillArrays not found in current path. │ - Run `import Pkg; Pkg.add("FillArrays")` to install the FillArrays package. │ Stacktrace: │ [1] macro expansion │ @ ./loading.jl:2445 [inlined] │ [2] macro expansion │ @ ./lock.jl:376 [inlined] │ [3] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2428 │ [4] require │ @ ./loading.jl:2404 [inlined] │ [5] eval_import_path │ @ ./module.jl:36 [inlined] │ [6] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [7] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base ./module.jl:101 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/HiddenMarkovModels.jl:23 │ ArgumentError: Package StatsFuns not found in current path. │ - Run `import Pkg; Pkg.add("StatsFuns")` to install the StatsFuns package. │ Stacktrace: │ [1] macro expansion │ @ ./loading.jl:2445 [inlined] │ [2] macro expansion │ @ ./lock.jl:376 [inlined] │ [3] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2428 │ [4] require │ @ ./loading.jl:2404 [inlined] │ [5] eval_import_path │ @ ./module.jl:36 [inlined] │ [6] eval_import_path_all(at::Module, path::Expr, keyword::String) │ @ Base ./module.jl:60 │ [7] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) │ @ Base ./module.jl:101 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/types/abstract_hmm.jl:130 │ LoadError: UndefVarError: `@argcheck` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in ArgCheck. │ Stacktrace: │ [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::Int64, world::UInt64, warn::Bool) │ @ Base ./flfrontend.jl:24 │ in expression starting at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/types/abstract_hmm.jl:137 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/linalg.jl:28 │ LoadError: UndefVarError: `@argcheck` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in ArgCheck. │ Stacktrace: │ [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::Int64, world::UInt64, warn::Bool) │ @ Base ./flfrontend.jl:24 │ in expression starting at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/linalg.jl:31 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/linalg.jl:48 │ UndefVarError: `@argcheck` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in ArgCheck. │ Stacktrace: │ [1] #macroexpand#22 │ @ ./expr.jl:203 [inlined] │ [2] macroexpand │ @ ./expr.jl:202 [inlined] │ [3] docm │ @ ./docs/Docs.jl:647 [inlined] │ [4] docm(source::LineNumberNode, mod::Module, meta::Any, ex::Any) │ @ Base.Docs ./docs/Docs.jl:647 │ [5] (::DocStringExtensions.var"#hook!##0#hook!##1"{typeof(DocStringExtensions.template_hook)})(::LineNumberNode, ::Vararg{Any}) │ @ DocStringExtensions ~/.julia/packages/DocStringExtensions/zNis6/src/templates.jl:11 │ [6] var"@doc"(__source__::LineNumberNode, __module__::Module, x::Vararg{Any}) │ @ Core ./boot.jl:766 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/linalg.jl:75 │ LoadError: UndefVarError: `@argcheck` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in ArgCheck. │ Stacktrace: │ [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::Int64, world::UInt64, warn::Bool) │ @ Base ./flfrontend.jl:24 │ in expression starting at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/linalg.jl:81 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/fit.jl:1 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/lightdiagnormal.jl:1 │ UndefVarError: `TYPEDEF` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/lightdiagnormal.jl:23 │ LoadError: UndefVarError: `@argcheck` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in ArgCheck. │ Stacktrace: │ [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::Int64, world::UInt64, warn::Bool) │ @ Base ./flfrontend.jl:24 │ in expression starting at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/lightdiagnormal.jl:25 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/lightdiagnormal.jl:55 │ LoadError: UndefVarError: `@argcheck` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in ArgCheck. │ Stacktrace: │ [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::Int64, world::UInt64, warn::Bool) │ @ Base ./flfrontend.jl:24 │ in expression starting at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/lightdiagnormal.jl:70 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/lightcategorical.jl:1 │ UndefVarError: `TYPEDEF` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/lightcategorical.jl:19 │ LoadError: UndefVarError: `@argcheck` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in ArgCheck. │ Stacktrace: │ [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::Int64, world::UInt64, warn::Bool) │ @ Base ./flfrontend.jl:24 │ in expression starting at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/lightcategorical.jl:20 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/lightcategorical.jl:50 │ LoadError: UndefVarError: `@argcheck` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in ArgCheck. │ Stacktrace: │ [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::Int64, world::UInt64, warn::Bool) │ @ Base ./flfrontend.jl:24 │ in expression starting at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/lightcategorical.jl:53 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/utils/limits.jl:1 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/forward.jl:1 │ UndefVarError: `TYPEDEF` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/forward.jl:19 │ UndefVarError: `TYPEDEF` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/forward.jl:48 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/forward.jl:88 │ LoadError: UndefVarError: `@argcheck` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in ArgCheck. │ Stacktrace: │ [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::Int64, world::UInt64, warn::Bool) │ @ Base ./flfrontend.jl:24 │ in expression starting at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/forward.jl:116 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/forward.jl:120 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/forward.jl:143 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/viterbi.jl:1 │ UndefVarError: `TYPEDEF` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/viterbi.jl:20 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/viterbi.jl:39 │ LoadError: UndefVarError: `@argcheck` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in ArgCheck. │ Stacktrace: │ [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::Int64, world::UInt64, warn::Bool) │ @ Base ./flfrontend.jl:24 │ in expression starting at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/viterbi.jl:72 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/viterbi.jl:76 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/viterbi.jl:98 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/forward_backward.jl:1 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/forward_backward.jl:74 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/forward_backward.jl:101 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/baum_welch.jl:16 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/baum_welch.jl:41 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/logdensity.jl:1 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/inference/logdensity.jl:16 │ UndefVarError: `SIGNATURES` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/HiddenMarkovModels.jl:47 │ UndefVarError: `ChainRulesCore` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: ChainRulesCore is loaded but not imported in the active module │ Stacktrace: │ [1] #invokelatest_gr#224 │ @ ./reflection.jl:1333 [inlined] │ [2] invokelatest_gr │ @ ./reflection.jl:1327 [inlined] │ [3] lookup_stmt(stmts::Vector{Any}, arg::Any) │ @ JuliaInterpreter ~/.julia/packages/JuliaInterpreter/41lEl/src/optimize.jl:21 │ [4] JuliaInterpreter.FrameCode(scope::Module, src::Core.CodeInfo; generator::Bool, optimize::Bool) │ @ JuliaInterpreter ~/.julia/packages/JuliaInterpreter/41lEl/src/types.jl:183 │ [5] FrameCode │ @ ~/.julia/packages/JuliaInterpreter/41lEl/src/types.jl:174 [inlined] │ [6] #Frame#3 │ @ ~/.julia/packages/JuliaInterpreter/41lEl/src/types.jl:330 [inlined] │ [7] Frame │ @ ~/.julia/packages/JuliaInterpreter/41lEl/src/types.jl:329 [inlined] │ [8] _virtual_process!(res::JET.VirtualProcessResult, toplevelex::Expr, filename::String, analyzer::JET.JETAnalyzer{JET.BasicPass}, config::JET.ToplevelConfig, context::Module, pkg_mod_depth::Int64; force_concretize::Bool, lnnref::Base.RefValue{LineNumberNode}) │ @ JET ~/.julia/packages/JET/z9poX/src/toplevel/virtualprocess.jl:917 │ [9] _virtual_process! │ @ ~/.julia/packages/JET/z9poX/src/toplevel/virtualprocess.jl:683 [inlined] │ [10] _virtual_process!(res::JET.VirtualProcessResult, s::String, filename::String, analyzer::JET.JETAnalyzer{JET.BasicPass}, config::JET.ToplevelConfig, context::Module, pkg_mod_depth::Int64) │ @ JET ~/.julia/packages/JET/z9poX/src/toplevel/virtualprocess.jl:666 │ [11] handle_include(interp::JET.ConcreteInterpreter{JET.var"#usemodule_with_err_handling#64"{Base.RefValue{LineNumberNode}, String, JET.ToplevelConfig, Int64, Set{Symbol}, JET.var"#general_err_handler#54"{Base.RefValue{LineNumberNode}, String}}, JET.JETAnalyzer{JET.BasicPass}}, include_func::Any, args::Vector{Any}) │ @ JET ~/.julia/packages/JET/z9poX/src/toplevel/virtualprocess.jl:1574 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/types/hmm.jl:1 │ UndefVarError: `@argcheck` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in ArgCheck. │ Stacktrace: │ [1] #macroexpand#22 │ @ ./expr.jl:203 [inlined] │ [2] macroexpand │ @ ./expr.jl:202 [inlined] │ [3] docm │ @ ./docs/Docs.jl:647 [inlined] │ [4] docm(source::LineNumberNode, mod::Module, meta::Any, ex::Any) │ @ Base.Docs ./docs/Docs.jl:647 │ [5] (::DocStringExtensions.var"#hook!##0#hook!##1"{typeof(DocStringExtensions.template_hook)})(::LineNumberNode, ::Vararg{Any}) │ @ DocStringExtensions ~/.julia/packages/DocStringExtensions/zNis6/src/templates.jl:11 │ [6] var"@doc"(__source__::LineNumberNode, __module__::Module, x::Vararg{Any}) │ @ Core ./boot.jl:766 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/types/hmm.jl:41 │ UndefVarError: `HMM` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in HiddenMarkovModels. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/types/hmm.jl:48 │ UndefVarError: `HMM` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in HiddenMarkovModels. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/types/hmm.jl:49 │ UndefVarError: `HMM` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in HiddenMarkovModels. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/types/hmm.jl:50 │ UndefVarError: `HMM` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in HiddenMarkovModels. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/types/hmm.jl:51 │ UndefVarError: `HMM` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in HiddenMarkovModels. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/types/hmm.jl:52 │ UndefVarError: `HMM` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in HiddenMarkovModels. └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/types/hmm.jl:56 │ LoadError: UndefVarError: `@argcheck` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in ArgCheck. │ Stacktrace: │ [1] fl_lower(ex::Expr, mod::Module, filename::String, lineno::Int64, world::UInt64, warn::Bool) │ @ Base ./flfrontend.jl:24 │ in expression starting at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/types/hmm.jl:100 └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/src/HiddenMarkovModels.jl:49 │ UndefVarError: `EXPORTS` not defined in `HiddenMarkovModels` │ Suggestion: check for spelling errors or missing imports. │ Hint: a global variable of this name also exists in DocStringExtensions. └─────────────────────── Unbound or partitioned GlobalRef not allowed in value position Internal error: during type inference of _pullback(Zygote.Context{false}, Main.var"#25#26", ComponentArrays.ComponentArray{Float64, 1, Array{Float64, 1}, Tuple{ComponentArrays.Axis{(init=ComponentArrays.ViewAxis{Base.UnitRange{Int64}(start=1, stop=2), nothing, ComponentArrays.Shaped1DAxis{(2,)}}(ax=ComponentArrays.Shaped1DAxis{(2,)}()), trans=ComponentArrays.ViewAxis{Base.UnitRange{Int64}(start=3, stop=6), nothing, ComponentArrays.ShapedAxis{(2, 2)}}(ax=ComponentArrays.ShapedAxis{(2, 2)}()), means=ComponentArrays.ViewAxis{Base.UnitRange{Int64}(start=7, stop=8), nothing, ComponentArrays.Shaped1DAxis{(2,)}}(ax=ComponentArrays.Shaped1DAxis{(2,)}()))}}}, Array{Float64, 1}, Array{Float64, 1}) Encountered unexpected error in runtime: ErrorException("IR verification failed.\n Code location: /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/examples/autodiff.jl:137\n Method instance: MethodInstance for ZygoteRules._pullback(::Zygote.Context{false}, ::var\"#25#26\", ::ComponentVector{Float64, Vector{Float64}, Tuple{Axis{(init = ViewAxis(1:2, Shaped1DAxis((2,))), trans = ViewAxis(3:6, ShapedAxis((2, 2))), means = ViewAxis(7:8, Shaped1DAxis((2,))))}}}, ::Vector{Float64}, ::Vector{Float64})") error at ./error.jl:54 unknown function (ip: 0x70a1c8db06ba) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] jl_f_invokelatest at /source/src/builtins.c:889 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] jl_f__apply_iterate at /source/src/builtins.c:876 raise_error at ./../usr/share/julia/Compiler/src/ssair/verify.jl:129 jfptr_raise_error_17498.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 check_op at ./../usr/share/julia/Compiler/src/ssair/verify.jl:75 verify_ir at ./../usr/share/julia/Compiler/src/ssair/verify.jl:433 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1081 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1059 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1032 jfptr_optimize_87824.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:231 jfptr_finish_nocycle_87787.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4488 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1386 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1569 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1578 jfptr_typeinf_ext_toplevel_84415.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] jl_type_infer at /source/src/gf.c:463 jl_compile_method_internal at /source/src/gf.c:3636 _jl_invoke at /source/src/gf.c:4108 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] jl_f__apply_iterate at /source/src/builtins.c:876 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:96 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] jl_f__apply_iterate at /source/src/builtins.c:876 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:94 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] jl_f__apply_iterate at /source/src/builtins.c:876 gradient at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:153 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 top-level scope at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/examples/autodiff.jl:136 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2954 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3014 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_57828.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:48 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] macro expansion at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:48 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] top-level scope at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:18 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_invoke at /source/src/gf.c:4123 jl_toplevel_eval_flex at /source/src/toplevel.c:731 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2954 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3014 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_57828.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 top-level scope at none:6 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_54598.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x70a1f5758249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S [381] signal 6 (-6): Aborted in expression starting at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/examples/autodiff.jl:136 unknown function (ip: 0x70a1f57bbebc) at /lib/x86_64-linux-gnu/libc.so.6 gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_type_infer at /source/src/gf.c:482 jl_compile_method_internal at /source/src/gf.c:3636 _jl_invoke at /source/src/gf.c:4108 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] jl_f__apply_iterate at /source/src/builtins.c:876 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:96 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] jl_f__apply_iterate at /source/src/builtins.c:876 pullback at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:94 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] jl_f__apply_iterate at /source/src/builtins.c:876 gradient at /home/pkgeval/.julia/packages/Zygote/55SqB/src/compiler/interface.jl:153 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2954 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3014 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_57828.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:48 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] macro expansion at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:48 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.13/Test/src/Test.jl:1961 [inlined] top-level scope at /home/pkgeval/.julia/packages/HiddenMarkovModels/Kmgf4/test/runtests.jl:18 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_invoke at /source/src/gf.c:4123 jl_toplevel_eval_flex at /source/src/toplevel.c:731 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2954 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3014 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_57828.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_54598.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2275 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x70a1f5758249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 246275021 (Pool: 246272556; Big: 2465); GC: 70 Testing failed after 720.63s ERROR: LoadError: Package HiddenMarkovModels errored during testing (received signal: 6) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2674 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2523 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:525 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval crashed after 1689.06s: an internal error was encountered