Package evaluation to test FBCModelTests on Julia 1.13.0-DEV.1319 (9cddfda8ef*) started at 2025-10-16T19:05:00.217


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 11.23s


################################################################################
# Installation
#

Installing FBCModelTests...
   Resolving package versions...
   Installed libaec_jll ──────────── v1.1.4+0
   Installed MacroTools ──────────── v0.5.16
   Installed Bzip2_jll ───────────── v1.0.9+0
   Installed MPICH_jll ───────────── v4.3.1+0
   Installed PeriodicTable ───────── v1.2.1
   Installed DiffResults ─────────── v1.1.0
   Installed DelimitedFiles ──────── v1.9.1
   Installed SBML ────────────────── v1.4.4
   Installed DataStructures ──────── v0.19.1
   Installed ForwardDiff ─────────── v1.2.2
   Installed MicrosoftMPI_jll ────── v10.1.4+3
   Installed OrderedCollections ──── v1.8.1
   Installed CodecZlib ───────────── v0.7.8
   Installed Compat ──────────────── v4.18.1
   Installed TranscodingStreams ──── v0.11.3
   Installed Statistics ──────────── v1.11.1
   Installed PrecompileTools ─────── v1.3.3
   Installed Xorg_libpciaccess_jll ─ v0.18.1+0
   Installed FBCModelTests ───────── v0.3.0
   Installed StaticArraysCore ────── v1.4.3
   Installed NaNMath ─────────────── v1.1.3
   Installed CodecBzip2 ──────────── v0.8.5
   Installed IrrationalConstants ─── v0.2.6
   Installed CommonSubexpressions ── v0.3.1
   Installed JSON3 ───────────────── v1.14.3
   Installed Requires ────────────── v1.3.1
   Installed StableRNGs ──────────── v1.0.3
   Installed MD5 ─────────────────── v0.2.3
   Installed OpenSpecFun_jll ─────── v0.5.6+0
   Installed LogExpFunctions ─────── v0.3.29
   Installed HDF5_jll ────────────── v1.14.6+0
   Installed SBML_jll ────────────── v5.20.1+0
   Installed DiffRules ───────────── v1.15.1
   Installed BufferedStreams ─────── v1.2.2
   Installed OpenMPI_jll ─────────── v5.0.8+0
   Installed JuMP ────────────────── v1.29.1
   Installed JSON ────────────────── v0.21.4
   Installed Hwloc_jll ───────────── v2.12.2+0
   Installed Parsers ─────────────── v2.8.3
   Installed IfElse ──────────────── v0.1.1
   Installed XML2_jll ────────────── v2.13.9+0
   Installed PikaParser ──────────── v0.5.2
   Installed Unitful ─────────────── v1.25.0
   Installed SpecialFunctions ────── v2.6.1
   Installed MutableArithmetics ──── v1.6.6
   Installed Preferences ─────────── v1.5.0
   Installed COBREXA ─────────────── v1.5.1
   Installed MPIPreferences ──────── v0.1.11
   Installed Libiconv_jll ────────── v1.18.0+0
   Installed StructTypes ─────────── v1.11.0
   Installed BenchmarkTools ──────── v1.6.1
   Installed MPItrampoline_jll ───── v5.5.4+0
   Installed JLLWrappers ─────────── v1.7.1
   Installed MAT ─────────────────── v0.10.7
   Installed DocStringExtensions ─── v0.9.5
   Installed DistributedData ─────── v0.2.0
   Installed HDF5 ────────────────── v0.16.16
   Installed MathOptInterface ────── v1.45.0
  Installing 10 artifacts
   Installed artifact Xorg_libpciaccess 24.8 KiB
   Installed artifact OpenSpecFun       194.9 KiB
   Installed artifact libaec            49.6 KiB
   Installed artifact Bzip2             503.5 KiB
   Installed artifact Hwloc             3.5 MiB
   Installed artifact XML2              2.5 MiB
   Installed artifact Libiconv          1.9 MiB
   Installed artifact MPICH             3.3 MiB
   Installed artifact HDF5              5.7 MiB
   Installed artifact SBML              5.8 MiB
    Updating `~/.julia/environments/v1.13/Project.toml`
  [1060cd45] + FBCModelTests v0.3.0
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [6e4b80f9] + BenchmarkTools v1.6.1
  [e1450e63] + BufferedStreams v1.2.2
⌅ [babc4406] + COBREXA v1.5.1
  [523fee87] + CodecBzip2 v0.8.5
  [944b1d66] + CodecZlib v0.7.8
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [864edb3b] + DataStructures v0.19.1
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [f6a0035f] + DistributedData v0.2.0
  [ffbed154] + DocStringExtensions v0.9.5
  [1060cd45] + FBCModelTests v0.3.0
  [f6369f11] + ForwardDiff v1.2.2
⌅ [f67ccb44] + HDF5 v0.16.16
  [615f187c] + IfElse v0.1.1
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
⌅ [682c06a0] + JSON v0.21.4
  [0f8b85d8] + JSON3 v1.14.3
  [4076af6c] + JuMP v1.29.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [23992714] + MAT v0.10.7
  [6ac74813] + MD5 v0.2.3
  [3da0fdf6] + MPIPreferences v0.1.11
  [1914dd2f] + MacroTools v0.5.16
  [b8f27783] + MathOptInterface v1.45.0
  [d8a4904e] + MutableArithmetics v1.6.6
  [77ba4419] + NaNMath v1.1.3
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
  [7b2266bf] + PeriodicTable v1.2.1
⌅ [3bbf5609] + PikaParser v0.5.2
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [ae029012] + Requires v1.3.1
⌅ [e5567a89] + SBML v1.4.4
  [276daf66] + SpecialFunctions v2.6.1
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  [856f2bd8] + StructTypes v1.11.0
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  [1986cc42] + Unitful v1.25.0
  [6e34b625] + Bzip2_jll v1.0.9+0
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.2+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [7cb0a576] + MPICH_jll v4.3.1+0
  [f1f71cc9] + MPItrampoline_jll v5.5.4+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.8+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [bb12108a] + SBML_jll v5.20.1+0
⌅ [02c8fc9c] + XML2_jll v2.13.9+0
  [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0
  [477f73a3] + libaec_jll v1.1.4+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
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  [ade2ca70] + Dates v1.11.0
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  [29816b5a] + LibSSH2_jll v1.11.3+1
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  [83775a58] + Zlib_jll v1.3.1+2
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  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.67.1+0
  [3f19e933] + p7zip_jll v17.6.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log`

Installation completed after 24.39s


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# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   5021.6 ms  ✓ TestEnv
  1 dependency successfully precompiled in 6 seconds. 27 already precompiled.

Precompiling package dependencies...

Precompilation completed after 61.36s


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# Testing
#

     Testing FBCModelTests
      Status `/tmp/jl_rPRlX0/Project.toml`
⌅ [babc4406] COBREXA v1.5.1
  [8bb1440f] DelimitedFiles v1.9.1
  [ffbed154] DocStringExtensions v0.9.5
  [1060cd45] FBCModelTests v0.3.0
  [60bf3e95] GLPK v1.2.1
⌅ [682c06a0] JSON v0.21.4
  [4076af6c] JuMP v1.29.1
  [6ac74813] MD5 v0.2.3
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⌅ [e5567a89] SBML v1.4.4
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  [44cfe95a] Pkg v1.13.0
  [ea8e919c] SHA v0.7.0
  [2f01184e] SparseArrays v1.13.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_rPRlX0/Manifest.toml`
  [6e4b80f9] BenchmarkTools v1.6.1
  [e1450e63] BufferedStreams v1.2.2
⌅ [babc4406] COBREXA v1.5.1
  [523fee87] CodecBzip2 v0.8.5
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  [60bf3e95] GLPK v1.2.1
⌅ [f67ccb44] HDF5 v0.16.16
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        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
ERROR: LoadError: ParseError:
# Error @ /home/pkgeval/.julia/packages/Unitful/HCJFR/src/logarithm.jl:127:5

Base. *(::MixedUnits, ::MixedUnits) =
#   └───────────────────────────────┘ ── extra tokens after end of expression
Stacktrace:
   [1] top-level scope
     @ ~/.julia/packages/Unitful/HCJFR/src/logarithm.jl:127
   [2] include(mapexpr::Function, mod::Module, _path::String)
     @ Base ./Base.jl:310
   [3] top-level scope
     @ ~/.julia/packages/Unitful/HCJFR/src/Unitful.jl:67
   [4] include(mod::Module, _path::String)
     @ Base ./Base.jl:309
   [5] __require_prelocked(pkg::Base.PkgId, env::String)
     @ Base ./loading.jl:2777
   [6] _require_prelocked(uuidkey::Base.PkgId, env::String)
     @ Base ./loading.jl:2536
   [7] macro expansion
     @ ./loading.jl:2464 [inlined]
   [8] macro expansion
     @ ./lock.jl:376 [inlined]
   [9] __require(into::Module, mod::Symbol)
     @ Base ./loading.jl:2428
  [10] require
     @ ./loading.jl:2404 [inlined]
  [11] eval_import_path
     @ ./module.jl:36 [inlined]
  [12] eval_import_path_all(at::Module, path::Expr, keyword::String)
     @ Base ./module.jl:60
  [13] _eval_using(to::Module, path::Expr)
     @ Base ./module.jl:137
  [14] top-level scope
     @ ~/.julia/packages/SBML/wqJog/src/SBML.jl:11
  [15] include(mod::Module, _path::String)
     @ Base ./Base.jl:309
  [16] __require_prelocked(pkg::Base.PkgId, env::String)
     @ Base ./loading.jl:2777
  [17] _require_prelocked(uuidkey::Base.PkgId, env::String)
     @ Base ./loading.jl:2536
  [18] macro expansion
     @ ./loading.jl:2464 [inlined]
  [19] macro expansion
     @ ./lock.jl:376 [inlined]
  [20] __require(into::Module, mod::Symbol)
     @ Base ./loading.jl:2428
  [21] require
     @ ./loading.jl:2404 [inlined]
  [22] eval_import_path
     @ ./module.jl:36 [inlined]
  [23] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr)
     @ Base ./module.jl:111
  [24] top-level scope
     @ ~/.julia/packages/COBREXA/IheBW/src/COBREXA.jl:47
  [25] include(mod::Module, _path::String)
     @ Base ./Base.jl:309
  [26] __require_prelocked(pkg::Base.PkgId, env::String)
     @ Base ./loading.jl:2777
  [27] _require_prelocked(uuidkey::Base.PkgId, env::String)
     @ Base ./loading.jl:2536
  [28] macro expansion
     @ ./loading.jl:2464 [inlined]
  [29] macro expansion
     @ ./lock.jl:376 [inlined]
  [30] __require(into::Module, mod::Symbol)
     @ Base ./loading.jl:2428
  [31] require
     @ ./loading.jl:2404 [inlined]
  [32] eval_import_path
     @ ./module.jl:36 [inlined]
  [33] eval_import_path_all(at::Module, path::Expr, keyword::String)
     @ Base ./module.jl:60
  [34] _eval_using(to::Module, path::Expr)
     @ Base ./module.jl:137
  [35] top-level scope
     @ ~/.julia/packages/FBCModelTests/Qgfx1/src/FBCModelTests.jl:10
  [36] include(mod::Module, _path::String)
     @ Base ./Base.jl:309
  [37] __require_prelocked(pkg::Base.PkgId, env::String)
     @ Base ./loading.jl:2777
  [38] _require_prelocked(uuidkey::Base.PkgId, env::String)
     @ Base ./loading.jl:2536
  [39] macro expansion
     @ ./loading.jl:2464 [inlined]
  [40] macro expansion
     @ ./lock.jl:376 [inlined]
  [41] __require(into::Module, mod::Symbol)
     @ Base ./loading.jl:2428
  [42] require
     @ ./loading.jl:2404 [inlined]
  [43] eval_import_path
     @ ./module.jl:36 [inlined]
  [44] eval_import_path_all(at::Module, path::Expr, keyword::String)
     @ Base ./module.jl:60
  [45] _eval_using(to::Module, path::Expr)
     @ Base ./module.jl:137
  [46] top-level scope
     @ ~/.julia/packages/FBCModelTests/Qgfx1/test/runtests.jl:3
  [47] include(mapexpr::Function, mod::Module, _path::String)
     @ Base ./Base.jl:310
  [48] top-level scope
     @ none:6
  [49] eval(m::Module, e::Any)
     @ Core ./boot.jl:489
  [50] exec_options(opts::Base.JLOptions)
     @ Base ./client.jl:310
  [51] _start()
     @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Unitful/HCJFR/src/logarithm.jl:127
in expression starting at /home/pkgeval/.julia/packages/Unitful/HCJFR/src/Unitful.jl:1
in expression starting at /home/pkgeval/.julia/packages/SBML/wqJog/src/SBML.jl:1
in expression starting at /home/pkgeval/.julia/packages/COBREXA/IheBW/src/COBREXA.jl:1
in expression starting at /home/pkgeval/.julia/packages/FBCModelTests/Qgfx1/src/FBCModelTests.jl:1
in expression starting at /home/pkgeval/.julia/packages/FBCModelTests/Qgfx1/test/runtests.jl:3

Testing failed after 380.03s

ERROR: LoadError: Package FBCModelTests errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2674
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2523 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:525
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 517.26s: package tests unexpectedly errored