Package evaluation to test DCAUtils on Julia 1.13.0-DEV.1319 (9cddfda8ef*) started at 2025-10-16T12:36:19.595 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.93s ################################################################################ # Installation # Installing DCAUtils... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [e41cd558] + DCAUtils v1.1.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [e41cd558] + DCAUtils v1.1.0 [a0c94c4b] + FastaIO v1.1.0 [92fee26a] + GZip v0.6.2 [56f22d72] + Artifacts v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 0.99s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 70.26s ################################################################################ # Testing # Testing DCAUtils Status `/tmp/jl_5by2qr/Project.toml` [e41cd558] DCAUtils v1.1.0 ⌅ [033835bb] JLD2 v0.4.54 [4af54fe1] LazyArtifacts v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_5by2qr/Manifest.toml` [e41cd558] DCAUtils v1.1.0 [a0c94c4b] FastaIO v1.1.0 [5789e2e9] FileIO v1.17.1 [92fee26a] GZip v0.6.2 ⌅ [033835bb] JLD2 v0.4.54 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [ae029012] Requires v1.3.1 [3bb67fe8] TranscodingStreams v0.11.3 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Loading results data [ Info: Attempting to dynamically load CodecZlib ERROR: LoadError: ArgumentError: Package CodecZlib not found in current path. - Run `import Pkg; Pkg.add("CodecZlib")` to install the CodecZlib package. Stacktrace: [1] macro expansion @ ./loading.jl:2445 [inlined] [2] macro expansion @ ./lock.jl:376 [inlined] [3] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [4] require @ ./loading.jl:2404 [inlined] [5] eval_import_path @ ./module.jl:36 [inlined] [6] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [7] top-level scope @ none:1 [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] (::JLD2.var"#checked_import##0#checked_import##1"{Symbol})() @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/compression.jl:43 [10] lock(f::JLD2.var"#checked_import##0#checked_import##1"{Symbol}, l::ReentrantLock) @ Base ./lock.jl:335 [11] checked_import @ ~/.julia/packages/JLD2/wLPAN/src/compression.jl:38 [inlined] [12] get_decompressor(filters::JLD2.FilterPipeline) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/compression.jl:111 [13] read_compressed_array!(v::Matrix{Float64}, f::JLD2.JLDFile{JLD2.MmapIO}, rr::JLD2.ReadRepresentation{Float64, Float64}, data_length::Int64, filters::JLD2.FilterPipeline) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/compression.jl:219 [14] read_array(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, rr::JLD2.ReadRepresentation, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:248 [15] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:100 [16] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86 [17] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50 [18] jlconvert(::JLD2.ReadRepresentation{Matrix{Float64}, JLD2.RelOffset}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, ::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/writing_datatypes.jl:320 [19] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/data/reconstructing_datatypes.jl:781 [inlined] [20] jlconvert(::JLD2.ReadRepresentation{Pair{Tuple{Float64, Bool, Any, Float64}, Matrix{Float64}}, JLD2.OnDiskRepresentation{(0, 8), Tuple{Tuple{Float64, Bool, Any, Float64}, Matrix{Float64}}, Tuple{JLD2.RelOffset, JLD2.RelOffset}, 16}()}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, header_offset::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/reconstructing_datatypes.jl:700 [21] read_scalar(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, header_offset::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:37 [22] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:98 [23] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86 [24] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50 [25] jlconvert(::JLD2.ReadRepresentation{Pair{Tuple{Float64, Bool, Any, Float64}, Matrix{Float64}}, JLD2.RelOffset}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, ::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/writing_datatypes.jl:320 [26] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:70 [inlined] [27] macro expansion @ ./simdloop.jl:77 [inlined] [28] read_array!(v::Vector{Pair{Tuple{Float64, Bool, Any, Float64}, Matrix{Float64}}}, f::JLD2.JLDFile{JLD2.MmapIO}, rr::JLD2.ReadRepresentation{Pair{Tuple{Float64, Bool, Any, Float64}, Matrix{Float64}}, JLD2.RelOffset}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:68 [29] read_array(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, rr::JLD2.ReadRepresentation, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:250 [30] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::JLD2.ReadRepresentation{Any, JLD2.RelOffset}, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:136 [31] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86 [32] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50 [33] jlconvert(::JLD2.ReadRepresentation{Dict{Tuple{Float64, Bool, Any, Float64}, Matrix{Float64}}, JLD2.CustomSerialization{Array, JLD2.RelOffset}}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, header_offset::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/custom_serialization.jl:60 ┌ [34] read_scalar(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, header_offset::JLD2.RelOffset) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:37 ├ [35] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute}) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:98 ├ [36] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute}) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86 ├ [37] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50 ├ [38] jlconvert │ @ ~/.julia/packages/JLD2/wLPAN/src/data/writing_datatypes.jl:320 [inlined] ├ [39] macro expansion │ @ ~/.julia/packages/JLD2/wLPAN/src/data/reconstructing_datatypes.jl:781 [inlined] ├ [40] jlconvert(::JLD2.ReadRepresentation{Pair{String, Any}, JLD2.OnDiskRepresentation{(0, 16), Tuple{String, Any}, Tuple{JLD2.Vlen{String}, JLD2.RelOffset}, 24}()}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, header_offset::JLD2.RelOffset) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/reconstructing_datatypes.jl:700 ├ [41] read_scalar(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, header_offset::JLD2.RelOffset) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:37 ├ [42] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute}) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:98 ├ [43] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute}) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86 ├ [44] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50 ├ [45] jlconvert(::JLD2.ReadRepresentation{Pair{String, Any}, JLD2.RelOffset}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, ::JLD2.RelOffset) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/writing_datatypes.jl:320 ├ [46] macro expansion │ @ ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:70 [inlined] ├ [47] macro expansion │ @ ./simdloop.jl:77 [inlined] ├ [48] read_array!(v::Vector{Pair{String, Any}}, f::JLD2.JLDFile{JLD2.MmapIO}, rr::JLD2.ReadRepresentation{Pair{String, Any}, JLD2.RelOffset}) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:68 ├ [49] read_array(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, rr::JLD2.ReadRepresentation, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute}) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:250 ├ [50] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::JLD2.ReadRepresentation{Any, JLD2.RelOffset}, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute}) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:136 ├ [51] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute}) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86 ├ [52] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50 ├ [53] jlconvert(::JLD2.ReadRepresentation{Dict{String, Any}, JLD2.CustomSerialization{Array, JLD2.RelOffset}}, f::JLD2.JLDFile{JLD2.MmapIO}, ptr::Ptr{Nothing}, header_offset::JLD2.RelOffset) │ @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/data/custom_serialization.jl:60 ╰───── repeated 2 times [74] read_scalar(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, header_offset::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/dataio.jl:37 [75] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, rr::Any, read_dataspace::Tuple{JLD2.ReadDataspace, JLD2.RelOffset, JLD2.DataLayout, JLD2.FilterPipeline}, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:98 [76] read_data(f::JLD2.JLDFile{JLD2.MmapIO}, dataspace::JLD2.ReadDataspace, dt::JLD2.H5Datatype, layout::JLD2.DataLayout, filters::JLD2.FilterPipeline, header_offset::JLD2.RelOffset, attributes::Vector{JLD2.ReadAttribute}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:86 [77] load_dataset(f::JLD2.JLDFile{JLD2.MmapIO}, offset::JLD2.RelOffset) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/datasets.jl:50 [78] getindex(g::JLD2.Group{JLD2.JLDFile{JLD2.MmapIO}}, name::String) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/groups.jl:99 [79] read @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:368 [inlined] [80] (::Main.DCAUtilsTests.var"#2#3")(f::JLD2.JLDFile{JLD2.MmapIO}) @ Main.DCAUtilsTests ~/.julia/packages/JLD2/wLPAN/src/loadsave.jl:153 [81] jldopen(f::Function, args::String; kws::@Kwargs{}) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/loadsave.jl:4 [82] jldopen(f::Function, args::String) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/loadsave.jl:1 [83] top-level scope @ ~/.julia/packages/DCAUtils/kq0WV/test/runtests.jl:152 [84] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [85] top-level scope @ none:6 [86] eval(m::Module, e::Any) @ Core ./boot.jl:489 [87] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [88] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/DCAUtils/kq0WV/test/runtests.jl:1 Testing failed after 185.7s ERROR: LoadError: Package DCAUtils errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2674 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2523 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:525 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 283.78s: package is using an unknown package