Package evaluation to test ApproxManifoldProducts on Julia 1.13.0-DEV.1307 (5a5fc987d0*) started at 2025-10-16T23:12:03.087 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.42s ################################################################################ # Installation # Installing ApproxManifoldProducts... Resolving package versions... Installed ApproxManifoldProducts ─ v0.10.1 Updating `~/.julia/environments/v1.13/Project.toml` [9bbbb610] + ApproxManifoldProducts v0.10.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [9bbbb610] + ApproxManifoldProducts v0.10.1 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.21.0 [d360d2e6] + ChainRulesCore v1.26.0 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [150eb455] + CoordinateTransformations v0.6.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.9 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + 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NaNMath v1.1.3 [356022a1] + NamedDims v1.2.3 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [94ee1d12] + Quaternions v0.7.6 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6038ab10] + Rotations v1.7.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + 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[9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.81s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 128.48s ################################################################################ # Testing # Testing ApproxManifoldProducts Status `/tmp/jl_sSUZLc/Project.toml` [9bbbb610] ApproxManifoldProducts v0.10.1 [fbb218c0] BSON v0.3.9 [5ae59095] Colors v0.13.1 [150eb455] CoordinateTransformations v0.6.4 [a93c6f00] DataFrames v1.8.0 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [0f8b85d8] JSON3 v1.14.3 [2472808a] KernelDensityEstimate v0.5.13 [6774de46] LieGroups v0.1.6 [1cead3c2] Manifolds v0.11.0 [3362f125] ManifoldsBase v2.0.0 [2774e3e8] NLsolve v4.5.1 [429524aa] Optim v1.13.2 [731186ca] RecursiveArrayTools v3.37.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [6038ab10] Rotations v1.7.1 [90137ffa] StaticArrays v1.9.15 [10745b16] Statistics v1.11.1 [02d47bb6] TensorCast v0.4.9 [9b8138ad] TransformUtils v0.2.21 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 Status `/tmp/jl_sSUZLc/Manifest.toml` [47edcb42] ADTypes v1.18.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [9bbbb610] ApproxManifoldProducts v0.10.1 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.21.0 [fbb218c0] BSON v0.3.9 [d360d2e6] ChainRulesCore v1.26.0 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [150eb455] CoordinateTransformations v0.6.4 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 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[7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [af67fdf4] ManifoldDiff v0.4.5 [1cead3c2] Manifolds v0.11.0 [3362f125] ManifoldsBase v2.0.0 ⌅ [99c1a7ee] MatrixEquations v2.4.2 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.10.0 [2774e3e8] NLsolve v4.5.1 [77ba4419] NaNMath v1.1.3 [356022a1] NamedDims v1.2.3 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [94ee1d12] Quaternions v0.7.6 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.37.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6038ab10] Rotations v1.7.1 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v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time test circular difftheta... | 18 18 0.5s Test Summary: | Pass Total Time test circular manifold BallTree construction small positive... | 16 16 7.3s Test Summary: | Pass Total Time test circular manifold BallTree construction small negative... | 16 16 0.1s Test Summary: | Pass Total Time test circular manifold BallTree construction around 0rad... | 16 16 0.0s Test Summary: | Pass Total Time test circular manifold BallTree construction around π wrap point... | 7 7 0.0s Test Summary: | Pass Total Time basic linear 1D find mu and Lambdas Gaussian product test... | 2 2 25.5s Test Summary: | Pass Total Time test 1D with 3 components on basic Euclidean line... | 2 2 0.0s Test Summary: | Pass Total Time Test SO2 wrap around minimization Gaussian means... | 9 9 11.0s Test Summary: | Pass Total Time basic linear 2D Rotation find mu and Lambdas Gaussian product test... | 8 8 1.0s Test Summary: | Pass Total Time test MF.jl conventions | 10 10 9.4s ┌ Error: Missing SO(2) vector transport numerical verify tests └ @ Main ~/.julia/packages/ApproxManifoldProducts/kVL9Q/test/testLieFundamentals.jl:41 Test Summary: | Pass Total Time SO(2) Vector transport (w curvature) via Jacobians and Lie adjoints | 3 3 5.1s ┌ Warning: TODO find Manifolds operation equivalent to Mahony 2024, perhaps `vector_transport_along`? └ @ Main ~/.julia/packages/ApproxManifoldProducts/kVL9Q/test/testLieFundamentals.jl:131 Test Summary: | Pass Total Time SO(3) Vector transport (w curvature) via Jacobians and Lie adjoints | 10 10 15.5s ┌ Error: Missing SE(2) vector transport numerical verify tests └ @ Main ~/.julia/packages/ApproxManifoldProducts/kVL9Q/test/testLieFundamentals.jl:167 Test Summary: | Pass Total Time SE(2) Vector transport (w curvature) via Jacobians and Lie adjoints | 2 2 4.3s ┌ Error: Missing SE(3) vector transport numerical verify tests └ @ Main ~/.julia/packages/ApproxManifoldProducts/kVL9Q/test/testLieFundamentals.jl:194 Test Summary: | Pass Total Time SE(3) Vector transport (w curvature) via Jacobians and Lie adjoints | 1 1 2.6s Test Summary: | Pass Total Time (Lie Group) on-manifold Gaussian product SO(3), [Ge, van Goor, Mahony, 2024] | 4 4 1m05.3s Test Summary: | Pass Total Time test getManifoldPartial on Euclidean(N) | 6 6 1.9s Test Summary: | Pass Total Time test getManifoldPartial on Circle() | 4 4 1.9s Test Summary: | Pass Total Time test getManifoldPartial on Rotations(2) | 4 4 1.4s Test Summary: | Pass Total Time test getManifoldPartial on ProductLieGroup | 20 20 4.8s Test Summary: | Pass Total Time test getManifoldPartial on SpecialEuclideanGroup(2; variant = :right) | 20 20 0.5s ┌ Error: Must fix Sphere(2) partial test └ @ Main ~/.julia/packages/ApproxManifoldProducts/kVL9Q/test/testManifoldPartial.jl:142 Test Summary: | Broken Total Time Reminder, getManifoldPartial on Sphere(2) [TBD] | 1 1 0.1s Test Summary: | Pass Broken Total Time test getPoints under partial with representation on ProductLieGroup | 2 1 3 12.9s Test Summary: | Broken Total Time test getPoints under partial with representation on SE2 | 1 1 3.3s Test Summary: | Pass Broken Total Time test marginal of marginal (partial) helper | 75 1 76 3.6s Test Summary: | Pass Total Time test replace overloads full and partial/marginal | 49 49 5.7s Test Summary: | Pass Total Time multiply big and small | 7 7 16.1s Test Summary: | Pass Total Time Basic 3D multiply and cross dimension covariance test... | 7 7 9.4s Test Summary: | Pass Total Time test calcProductGaussians | 2 2 7.9s Test Summary: | Pass Total Time comparison test with basic product | 12 12 11.3s Test Summary: | Pass Total Time test dim=2 product with one partial/marginal | 103 103 7.8s Test Summary: | Pass Total Time test dim=2 product with one full and two similar marginals | 103 103 1.5s Test Summary: | Pass Total Time test dim=2 product with one full and two different marginals | 103 103 2.3s Test Summary: | Pass Total Time product of only one marginal per each of two dimensions | 103 103 5.1s Test Summary: | Pass Total Time test dim=2 product of only marginals, two per dimension, 4 factors total | 101 101 1.7s Test Summary: | Pass Total Time test dim=3 product with one full and two different marginals | 153 153 9.7s Test Summary: | Pass Total Time test dim=3 product with one full and two different marginals (marginal first in product) | 153 153 1.1s Test Summary: | Pass Total Time test dim=3 product with two different marginals and one open dimension | 104 104 6.5s Test Summary: | Pass Total Time Test mmd distance between Euclidean beliefs | 1 1 11.7s Test Summary: | Pass Total Time Test mmd distance between 2D Euclidean beliefs | 1 1 0.6s Test Summary: | Pass Broken Total Time partial product with a SpecialEuclideanGroup(2; variant = :right) | 403 400 803 54.6s ManifoldKernelDensity{ M = LieGroup{ℝ, RightSemidirectProductGroupOperation{AdditionGroupOperation, MatrixMultiplicationGroupOperation, LeftMultiplicationGroupAction, ActionActsOnRight}, ProductManifold{ℝ, Tuple{Euclidean{ℝ, ManifoldsBase.TypeParameter{Tuple{3}}}, Rotations{ManifoldsBase.TypeParameter{Tuple{3}}}}}}, B = BallTreeDensity, L = Nothing, P = ArrayPartition{Float64, Tuple{Vector{Float64}, Matrix{Float64}}} }( Npts: 50 dims: 6 prtl: nothing bws: [0.2079, 0.4017, 0.1493, 0.0508, 0.0467, 0.0666] ipc: [1.0, 1.0, 1.0, 1.0, 1.0, 1.0] mean: ---- ) Test Summary: | Pass Total Time Test isapprox function on basic SpecialEuclideanGroup(3; variant = :right) | 10 10 17.8s Test Summary: | Pass Total Time test symmetry of Manifolds.distance | 4 4 3.5s Test Summary: | Pass Total Time test updating of beliefs | 3 3 2.3s Test Summary: | Pass Broken Total Time Test basic MKD statistics | 5 1 6 3.9s _ax_ERR = (log(SpecialOrthogonalGroup(2), r_R_ax_' * r_R_ax))[1, 2] = 0.004764829667907216 testval = isapprox(0, _ax_ERR; atol = 8 / length(ax_CC)) = true Test Summary: | Pass Total Time test ManellicTree construction | 4 4 38.6s Test Summary: | Pass Total Time ManellicTree construction 1D | 362 362 22.8s Test Summary: | Pass Total Time ManellicTree 1D basic construction and evaluations | 106 106 1m56.3s Test Summary: | Pass Broken Total Time Test evaluate MvNormalKernel | 9 2 11 6.8s y_pdf = 0.6349363593424094 ┌ Warning: soft test failure for approx function vs. true Normal density function evaluation └ @ Main ~/.julia/packages/ApproxManifoldProducts/kVL9Q/test/manellic/testManifoldTreeConstr.jl:440 Test Summary: | Pass Broken Total Time Basic ManellicTree manifolds construction and evaluations | 2 1 3 3m08.5s ┌ Error: expectedLogL for different number of test points not working yet. └ @ Main ~/.julia/packages/ApproxManifoldProducts/kVL9Q/test/manellic/testTreeEvaluation.jl:37 AMP.entropy(mtree) = Inf Test Summary: | Pass Total Time Manellic basic evaluation test 1D | 2 2 3.4s Test Summary: | Pass Total Time Manellic tree bandwidth evaluation | 4 4 4.1s Test Summary: | Pass Total Time Manellic tree kernel bandwidth 1D LOO evaluation/entropy checks | 3 3 1.3s best_cov = Optim.minimizer(res) = 0.38594558149461516 Test Summary: | Pass Total Time Manellic tree bandwidth optimization 1D section search | 4 4 32.4s best_cov = 0.6558119615101263 Test Summary: | Pass Broken Total Time Manellic tree all up construction with bandwith optimization | 1 1 2 9.7s 8.153022 seconds (13.61 M allocations: 512.829 MiB, 1.64% gc time, 71.34% compilation time) best_cov = abs.(Optim.minimizer(res)) = [0.45883822419729037, 0.6452787278135127] Test Summary: | Pass Total Time Multidimensional LOOCV bandwidth optimization, TranslationGroup(2) | 3 3 26.0s 10.622623 seconds (68.59 M allocations: 2.905 GiB, 13.98% gc time, 23.36% compilation time) best_cov = abs.(Optim.minimizer(res)) = [0.46895276301908295, 0.8221248426888057, 0.062036362623034365] Test Summary: | Pass Total Time Multidimensional LOOCV bandwidth optimization, SpecialEuclideanGroup(2; variant = :right) | 5 5 48.5s 32.016605 seconds (322.99 M allocations: 25.775 GiB, 12.85% gc time, 6.17% compilation time) best_cov = abs.(Optim.minimizer(res)) = [0.5582232497413377, 1.030115921924624, 0.7158558101667907, 0.06539347157980016, 0.06156556993310711, 0.10452019703980822] Test Summary: | Pass Total Time Multidimensional LOOCV bandwidth optimization, SpecialEuclideanGroup(3; variant = :right) | 5 5 2m05.9s [ Info: Leaves only label sampling version (Gibbs), TranslationGroup(1) [ Info: Multi-scale label sampling version (Gibbs), TranslationGroup(1) Test Summary: | Pass Total Time Product of two Manellic beliefs, Sequential Gibbs, TranslationGroup(1) | 19 19 10.9s Test Summary: | Pass Total Time Multi-scale label sampling version (Gibbs), TranslationGroup(2) | 1 1 22.9s ┌ Warning: Brute force product test overlap 100.0% └ @ Main ~/.julia/packages/ApproxManifoldProducts/kVL9Q/test/manellic/testTreeKernelProducts.jl:95 Test Summary: | Pass Total Time Test Product the brute force way, MF.SpecialEuclideanGroup(2; variant = :right) | 2 2 20.1s Test Summary: | Pass Total Time Rotated covariance product major axis checks, MF.TranslationGroup(2) | 1 1 0.8s mean(kerpq) = ArrayPartition{Float64, Tuple{Vector{Float64}, Matrix{Float64}}}(([0.0, 0.0], [0.866025403784439 -0.5000000000000001; 0.5000000000000001 0.866025403784439])) Test Summary: | Pass Total Time Rotated covariance product major axis checks, MF.SpecialEuclideanGroup(2; variant = :right) | 1 1 1.0s Test Summary: | Pass Total Time Test utility functions for Gaussian products, MF.TranslationGroup(1) | 4 4 0.5s Testing ApproxManifoldProducts tests passed Testing completed after 1110.33s PkgEval succeeded after 1282.33s