Package evaluation to test NMRInversions on Julia 1.13.0-DEV.1296 (e8025198af*) started at 2025-10-12T21:50:32.830


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.96s


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# Installation
#

Installing NMRInversions...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [55c20db2] + NMRInversions v1.1.3
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [47edcb42] + ADTypes v1.18.0
  [79e6a3ab] + Adapt v4.4.0
  [66dad0bd] + AliasTables v1.1.3
  [4fba245c] + ArrayInterface v7.20.0
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [187b0558] + ConstructionBase v1.6.0
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.1
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.7.9
  [ffbed154] + DocStringExtensions v0.9.5
  [4e289a0a] + EnumX v1.0.5
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.14.0
  [6a86dc24] + FiniteDiff v2.28.1
  [f6369f11] + ForwardDiff v1.2.1
  [92d709cd] + IrrationalConstants v0.2.4
  [692b3bcd] + JLLWrappers v1.7.1
  [d3d80556] + LineSearches v7.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [1914dd2f] + MacroTools v0.5.16
  [e1d29d7a] + Missings v1.2.0
  [d41bc354] + NLSolversBase v7.10.0
  [55c20db2] + NMRInversions v1.1.3
  [77ba4419] + NaNMath v1.1.3
  [e1fe445b] + NativeFileDialog v0.2.1
  [429524aa] + Optim v1.13.2
  [bac558e1] + OrderedCollections v1.8.1
  [d96e819e] + Parameters v0.12.3
  [647866c9] + PolygonOps v0.1.2
  [85a6dd25] + PositiveFactorizations v0.2.4
  [21216c6a] + Preferences v1.5.0
  [43287f4e] + PtrArrays v1.3.0
  [ae029012] + Requires v1.3.1
  [efcf1570] + Setfield v1.1.2
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.6
  [3a884ed6] + UnPack v1.0.2
  [7b86fcea] + ATK_jll v2.38.1+0
  [6e34b625] + Bzip2_jll v1.0.9+0
  [83423d85] + Cairo_jll v1.18.5+0
  [ee1fde0b] + Dbus_jll v1.16.2+0
  [2702e6a9] + EpollShim_jll v0.0.20230411+1
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  [88015f11] + LERC_jll v4.0.1+0
  [1d63c593] + LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] + LZO_jll v2.10.3+0
  [42c93a91] + Libepoxy_jll v1.5.11+0
  [e9f186c6] + Libffi_jll v3.4.7+0
  [7e76a0d4] + Libglvnd_jll v1.7.1+1
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [4b2f31a3] + Libmount_jll v2.41.2+0
  [89763e89] + Libtiff_jll v4.7.2+0
  [38a345b3] + Libuuid_jll v2.41.2+0
  [94d9ae2c] + NativeFileDialog_jll v1.1.6+3
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  [36c8627f] + Pango_jll v1.56.4+0
⌅ [30392449] + Pixman_jll v0.44.2+0
  [a2964d1f] + Wayland_jll v1.24.0+0
⌅ [02c8fc9c] + XML2_jll v2.13.9+0
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  [a3789734] + Xorg_libXdmcp_jll v1.1.6+0
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  [d091e8ba] + Xorg_libXfixes_jll v6.0.2+0
  [a51aa0fd] + Xorg_libXi_jll v1.8.3+0
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  [ec84b674] + Xorg_libXrandr_jll v1.5.5+0
  [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0
  [b6f176f1] + Xorg_libXtst_jll v1.2.5+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0
  [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0
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  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
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  [8e850ede] + nghttp2_jll v1.67.1+0
  [3f19e933] + p7zip_jll v17.6.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 6.44s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 113.77s


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# Testing
#

     Testing NMRInversions
      Status `/tmp/jl_9QwH3N/Project.toml`
  [8bb1440f] DelimitedFiles v1.9.1
  [e9467ef8] GLMakie v0.13.6
  [55c20db2] NMRInversions v1.1.3
  [e1fe445b] NativeFileDialog v0.2.1
  [429524aa] Optim v1.13.2
  [647866c9] PolygonOps v0.1.2
  [37e2e46d] LinearAlgebra v1.13.0
  [44cfe95a] Pkg v1.13.0
  [9a3f8284] Random v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_9QwH3N/Manifest.toml`
  [47edcb42] ADTypes v1.18.0
  [621f4979] AbstractFFTs v1.5.0
  [1520ce14] AbstractTrees v0.4.5
  [79e6a3ab] Adapt v4.4.0
  [35492f91] AdaptivePredicates v1.2.0
  [66dad0bd] AliasTables v1.1.3
  [27a7e980] Animations v0.4.2
  [4fba245c] ArrayInterface v7.20.0
  [67c07d97] Automa v1.1.0
  [13072b0f] AxisAlgorithms v1.1.0
  [39de3d68] AxisArrays v0.4.8
  [18cc8868] BaseDirs v1.3.2
  [fa961155] CEnum v0.5.0
  [96374032] CRlibm v1.0.2
  [d360d2e6] ChainRulesCore v1.26.0
  [a2cac450] ColorBrewer v0.4.1
  [35d6a980] ColorSchemes v3.31.0
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  [5ae59095] Colors v0.13.1
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.1
  [95dc2771] ComputePipeline v0.1.4
  [187b0558] ConstructionBase v1.6.0
  [d38c429a] Contour v0.6.3
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.19.1
  [e2d170a0] DataValueInterfaces v1.0.0
  [927a84f5] DelaunayTriangulation v1.6.4
  [8bb1440f] DelimitedFiles v1.9.1
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [a0c0ee7d] DifferentiationInterface v0.7.9
  [31c24e10] Distributions v0.25.122
  [ffbed154] DocStringExtensions v0.9.5
  [4e289a0a] EnumX v1.0.5
  [429591f6] ExactPredicates v2.2.9
  [411431e0] Extents v0.1.6
  [7a1cc6ca] FFTW v1.10.0
  [5789e2e9] FileIO v1.17.1
⌅ [8fc22ac5] FilePaths v0.8.3
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.14.0
  [6a86dc24] FiniteDiff v2.28.1
  [53c48c17] FixedPointNumbers v0.8.5
  [1fa38f19] Format v1.3.7
  [f6369f11] ForwardDiff v1.2.1
  [b38be410] FreeType v4.1.1
  [663a7486] FreeTypeAbstraction v0.10.8
  [f7f18e0c] GLFW v3.4.5
  [e9467ef8] GLMakie v0.13.6
  [5c1252a2] GeometryBasics v0.5.10
  [3955a311] GridLayoutBase v0.11.2
  [42e2da0e] Grisu v1.0.2
  [34004b35] HypergeometricFunctions v0.3.28
  [2803e5a7] ImageAxes v0.6.12
  [c817782e] ImageBase v0.1.7
  [a09fc81d] ImageCore v0.10.5
  [82e4d734] ImageIO v0.6.9
  [bc367c6b] ImageMetadata v0.9.10
  [9b13fd28] IndirectArrays v1.0.0
  [d25df0c9] Inflate v0.1.5
  [a98d9a8b] Interpolations v0.16.2
  [d1acc4aa] IntervalArithmetic v1.0.1
  [8197267c] IntervalSets v0.7.11
  [3587e190] InverseFunctions v0.1.17
  [92d709cd] IrrationalConstants v0.2.4
  [f1662d9f] Isoband v0.1.1
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.1
⌅ [682c06a0] JSON v0.21.4
  [b835a17e] JpegTurbo v0.1.6
  [5ab0869b] KernelDensity v0.6.10
  [b964fa9f] LaTeXStrings v1.4.0
  [8cdb02fc] LazyModules v0.3.1
  [d3d80556] LineSearches v7.4.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [1914dd2f] MacroTools v0.5.16
  [ee78f7c6] Makie v0.24.6
  [dbb5928d] MappedArrays v0.4.2
  [0a4f8689] MathTeXEngine v0.6.6
  [7269a6da] MeshIO v0.5.3
  [e1d29d7a] Missings v1.2.0
  [66fc600b] ModernGL v1.1.8
  [e94cdb99] MosaicViews v0.3.4
  [d41bc354] NLSolversBase v7.10.0
  [55c20db2] NMRInversions v1.1.3
  [77ba4419] NaNMath v1.1.3
  [e1fe445b] NativeFileDialog v0.2.1
  [f09324ee] Netpbm v1.1.1
  [510215fc] Observables v0.5.5
  [6fe1bfb0] OffsetArrays v1.17.0
  [52e1d378] OpenEXR v0.3.3
  [429524aa] Optim v1.13.2
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.35
  [f57f5aa1] PNGFiles v0.4.4
  [19eb6ba3] Packing v0.5.1
  [5432bcbf] PaddedViews v0.5.12
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.3
  [eebad327] PkgVersion v0.3.3
  [995b91a9] PlotUtils v1.4.3
  [647866c9] PolygonOps v0.1.2
  [85a6dd25] PositiveFactorizations v0.2.4
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [92933f4c] ProgressMeter v1.11.0
  [43287f4e] PtrArrays v1.3.0
  [4b34888f] QOI v1.0.1
  [1fd47b50] QuadGK v2.11.2
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  [c84ed2f1] Ratios v0.4.5
  [189a3867] Reexport v1.2.2
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.1
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  [fdea26ae] SIMD v3.7.2
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  [efcf1570] Setfield v1.1.2
  [65257c39] ShaderAbstractions v0.5.0
  [992d4aef] Showoff v1.0.3
  [73760f76] SignedDistanceFields v0.4.0
  [699a6c99] SimpleTraits v0.9.5
  [45858cf5] Sixel v0.1.5
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.6.1
  [860ef19b] StableRNGs v1.0.3
  [cae243ae] StackViews v0.1.2
  [90137ffa] StaticArrays v1.9.15
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
  [2913bbd2] StatsBase v0.34.6
  [4c63d2b9] StatsFuns v1.5.0
  [09ab397b] StructArrays v0.7.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
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  [3bb67fe8] TranscodingStreams v0.11.3
  [981d1d27] TriplotBase v0.1.0
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  [1986cc42] Unitful v1.25.0
  [e3aaa7dc] WebP v0.1.3
  [efce3f68] WoodburyMatrices v1.0.0
  [7b86fcea] ATK_jll v2.38.1+0
  [6e34b625] Bzip2_jll v1.0.9+0
  [4e9b3aee] CRlibm_jll v1.0.1+0
  [83423d85] Cairo_jll v1.18.5+0
  [ee1fde0b] Dbus_jll v1.16.2+0
  [5ae413db] EarCut_jll v2.2.4+0
  [2702e6a9] EpollShim_jll v0.0.20230411+1
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⌅ [b22a6f82] FFMPEG_jll v6.1.3+0
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⌅ [30392449] Pixman_jll v0.44.2+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [a2964d1f] Wayland_jll v1.24.0+0
⌅ [02c8fc9c] XML2_jll v2.13.9+0
  [ffd25f8a] XZ_jll v5.8.1+0
  [4f6342f7] Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.13+0
  [3c9796d7] Xorg_libXcomposite_jll v0.4.6+0
  [935fb764] Xorg_libXcursor_jll v1.2.4+0
  [0aeada51] Xorg_libXdamage_jll v1.1.6+0
  [a3789734] Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] Xorg_libXext_jll v1.3.7+0
  [d091e8ba] Xorg_libXfixes_jll v6.0.2+0
  [a51aa0fd] Xorg_libXi_jll v1.8.3+0
  [d1454406] Xorg_libXinerama_jll v1.1.6+0
  [ec84b674] Xorg_libXrandr_jll v1.5.5+0
  [ea2f1a96] Xorg_libXrender_jll v0.9.12+0
  [b6f176f1] Xorg_libXtst_jll v1.2.5+0
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        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
"Testing inversion of artificial data."
"Testing α = 104.0"
"Testing α = 4.54"
"Testing α = 0.241"
"Testing α = 0.0237"
"Testing α = 0.0173"
"Testing α = 0.0161"
"Testing α = 0.0157"
"The optimal α is 0.016"
"Converged at α =0.0161, after 23 calls."
"Converged at α =0.0169, after 18 calls."
"Testing expfit."
"Testing phase correction accuracy."
"The correction error is 0.0019 radians"
"Testing plots - inverting geospec data."
"Data phase corrected by 2.939 radians."
"SVD truncated to 23 singular values out of 32"
"Testing α = 149.0"
"Testing α = 11.4"
"Testing α = 1.12"
"Testing α = 0.123"
"Testing α = 0.0376"
"Testing α = 0.0423"
"Testing α = 0.0412"
"The optimal α is 0.042"
"Data phase corrected by 2.929 radians."

NMRInversions.jl: Error During Test at /home/pkgeval/.julia/packages/NMRInversions/6C4IS/test/runtests.jl:119
  Test threw exception
  Expression: plot(invert(import_geospec("../example_data/geospec_data/bunter_IRCPMG.txt"), alpha = 0.5)) isa Figure
  MethodError: no method matching length(::Observable{Matrix{Float64}})
  The function `length` exists, but no method is defined for this combination of argument types.
  Closest candidates are:
    length(!Matched::Distributions.DirichletStats)
     @ Distributions ~/.julia/packages/Distributions/psM3H/src/multivariate/dirichlet.jl:186
    length(!Matched::Compiler.MethodLookupResult)
     @ Base /opt/julia/share/julia/Compiler/src/methodtable.jl:10
    length(!Matched::NativeFileDialog.NFDPathSet)
     @ NativeFileDialog ~/.julia/packages/NativeFileDialog/DjWR5/src/NativeFileDialog.jl:20
    ...
  Stacktrace:
    [1] _zip_min_length(is::Tuple{Observable{Matrix{Float64}}})
      @ Base.Iterators ./iterators.jl:375
    [2] _zip_min_length(is::Tuple{Matrix{Float64}, Observable{Matrix{Float64}}})
      @ Base.Iterators ./iterators.jl:371
    [3] length(z::Base.Iterators.Zip{Tuple{Matrix{Float64}, Observable{Matrix{Float64}}}})
      @ Base.Iterators ./iterators.jl:365
    [4] length(g::Base.Generator{Base.Iterators.Zip{Tuple{Matrix{Float64}, Observable{Matrix{Float64}}}}, Base.var"#Generator##0#Generator##1"{gui_ext.var"#68#69"}})
      @ Base ./generator.jl:51
    [5] _similar_shape(itr::Base.Generator{Base.Iterators.Zip{Tuple{Matrix{Float64}, Observable{Matrix{Float64}}}}, Base.var"#Generator##0#Generator##1"{gui_ext.var"#68#69"}}, ::Base.HasLength)
      @ Base ./array.jl:688
    [6] collect(itr::Base.Generator{Base.Iterators.Zip{Tuple{Matrix{Float64}, Observable{Matrix{Float64}}}}, Base.var"#Generator##0#Generator##1"{gui_ext.var"#68#69"}})
      @ Base ./array.jl:827
    [7] map(f::Function, it::Matrix{Float64}, iters::Observable{Matrix{Float64}})
      @ Base ./abstractarray.jl:3546
    [8] plot(res::inv_out_2D)
      @ gui_ext ~/.julia/packages/NMRInversions/6C4IS/ext/gui_2D.jl:385
    [9] top-level scope
      @ ~/.julia/packages/NMRInversions/6C4IS/test/runtests.jl:96
   [10] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1954 [inlined]
   [11] macro expansion
      @ ~/.julia/packages/NMRInversions/6C4IS/test/runtests.jl:119 [inlined]
   [12] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:750 [inlined]
Test Summary:    | Pass  Error  Total     Time
NMRInversions.jl |    7      1      8  7m39.5s
RNG of the outermost testset: Xoshiro(0xfff0241072ddab67, 0xc53bc12f4c3f0b4e, 0x56d451780b2dd4ba, 0x50a4aa153d208dd8, 0x3649a58b3b63d5db)
ERROR: LoadError: Some tests did not pass: 7 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/NMRInversions/6C4IS/test/runtests.jl:95

Testing failed after 804.47s

ERROR: LoadError: Package NMRInversions errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2674
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2523 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:525
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 960.31s: package tests unexpectedly errored