Package evaluation to test BiobakeryUtils on Julia 1.13.0-DEV.1296 (e8025198af*) started at 2025-10-12T19:41:00.901 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.42s ################################################################################ # Installation # Installing BiobakeryUtils... Resolving package versions... Installed Conda ─ v1.10.2 Updating `~/.julia/environments/v1.13/Project.toml` [fa5322f5] + BiobakeryUtils v0.7.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [fa5322f5] + BiobakeryUtils v0.7.0 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 [8f4d0f93] + Conda v1.10.2 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [85a47980] + Dictionaries v0.3.29 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [a58aae7d] + EcoBase v0.1.7 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [34004b35] + HypergeometricFunctions v0.3.28 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.5 [bd334432] + InlineTest v0.2.0 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [3bd8f0ae] + Microbiome v0.10.1 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [e0db7c4e] + ReTest v0.3.4 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [68821587] + Arpack_jll v3.5.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Installation completed after 11.1s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 40.55s ################################################################################ # Testing # Testing BiobakeryUtils Status `/tmp/jl_CrTTjr/Project.toml` [fa5322f5] BiobakeryUtils v0.7.0 [336ed68f] CSV v0.10.15 [8bb1440f] DelimitedFiles v1.9.1 [3bd8f0ae] Microbiome v0.10.1 [e0db7c4e] ReTest v0.3.4 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_CrTTjr/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 [fa5322f5] BiobakeryUtils v0.7.0 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.18.1 [8f4d0f93] Conda v1.10.2 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 ⌅ [85a47980] Dictionaries v0.3.29 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [a58aae7d] EcoBase v0.1.7 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.14.0 [34004b35] HypergeometricFunctions v0.3.28 [313cdc1a] Indexing v1.1.1 [842dd82b] InlineStrings v1.4.5 [bd334432] InlineTest v0.2.0 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [2ab3a3ac] LogExpFunctions v0.3.29 [3bd8f0ae] Microbiome v0.10.1 [e1d29d7a] Missings v1.2.0 [6f286f6a] MultivariateStats v0.10.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [e0db7c4e] ReTest v0.3.4 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.8.0 [91c51154] SentinelArrays v1.4.8 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [81def892] VersionParsing v1.3.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 ⌅ [68821587] Arpack_jll v3.5.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Imported binding Test.pop_testset was undeclared at import time during import to Testset. WARNING: Imported binding Test.push_testset was undeclared at import time during import to Testset. [ Info: Downloading miniconda installer ... [ Info: Installing miniconda ... PREFIX=/home/pkgeval/.julia/conda/3/x86_64 Unpacking payload ... Extracting _libgcc_mutex-0.1-conda_forge.tar.bz2 Extracting ca-certificates-2025.7.14-hbd8a1cb_0.conda Extracting ld_impl_linux-64-2.44-h1423503_1.conda Extracting libgomp-15.1.0-h767d61c_3.conda Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2 Extracting python_abi-3.12-8_cp312.conda Extracting tzdata-2025b-h78e105d_0.conda Extracting _openmp_mutex-4.5-2_gnu.tar.bz2 Extracting libgcc-15.1.0-h767d61c_3.conda Extracting c-ares-1.34.5-hb9d3cd8_0.conda Extracting libexpat-2.7.1-hecca717_0.conda Extracting libffi-3.4.6-h2dba641_1.conda Extracting libgcc-ng-15.1.0-h69a702a_3.conda Extracting libiconv-1.18-h4ce23a2_1.conda Extracting liblzma-5.8.1-hb9d3cd8_2.conda Extracting libnsl-2.0.1-hb9d3cd8_1.conda Extracting libstdcxx-15.1.0-h8f9b012_3.conda Extracting libzlib-1.3.1-hb9d3cd8_2.conda Extracting ncurses-6.5-h2d0b736_3.conda Extracting openssl-3.5.1-h7b32b05_0.conda Extracting reproc-14.2.5.post0-hb9d3cd8_0.conda Extracting bzip2-1.0.8-h4bc722e_7.conda Extracting cpp-expected-1.1.0-hff21bea_1.conda Extracting fmt-11.1.4-h07f6e7f_1.conda Extracting keyutils-1.6.1-h166bdaf_0.tar.bz2 Extracting libedit-3.1.20250104-pl5321h7949ede_0.conda Extracting libev-4.33-hd590300_2.conda Extracting libsolv-0.7.34-h9463b59_0.conda Extracting libssh2-1.11.1-hcf80075_0.conda Extracting libstdcxx-ng-15.1.0-h4852527_3.conda Extracting libuuid-2.38.1-h0b41bf4_0.conda Extracting libxcrypt-4.4.36-hd590300_1.conda Extracting lz4-c-1.10.0-h5888daf_1.conda Extracting lzo-2.10-hd590300_1001.conda Extracting readline-8.2-h8c095d6_2.conda Extracting reproc-cpp-14.2.5.post0-h5888daf_0.conda Extracting simdjson-3.12.3-h84d6215_0.conda Extracting tk-8.6.13-noxft_hd72426e_102.conda Extracting yaml-cpp-0.8.0-h3f2d84a_0.conda Extracting zstd-1.5.7-hb8e6e7a_2.conda Extracting icu-75.1-he02047a_0.conda Extracting krb5-1.21.3-h659f571_0.conda Extracting libnghttp2-1.64.0-h161d5f1_0.conda Extracting nlohmann_json-3.11.3-he02047a_1.conda Extracting libcurl-8.14.1-h332b0f4_0.conda Extracting libsqlite-3.50.3-hee844dc_1.conda Extracting libxml2-2.13.8-h4bc477f_0.conda Extracting libarchive-3.7.7-h75ea233_4.conda Extracting python-3.12.11-h9e4cc4f_0_cpython.conda Extracting libmamba-2.1.1-h430c389_0.conda Extracting menuinst-2.3.1-py312h7900ff3_0.conda Extracting archspec-0.2.5-pyhd8ed1ab_0.conda Extracting boltons-25.0.0-pyhd8ed1ab_0.conda Extracting brotli-python-1.1.0-py312h2ec8cdc_3.conda Extracting certifi-2025.7.14-pyhd8ed1ab_0.conda Extracting charset-normalizer-3.4.2-pyhd8ed1ab_0.conda Extracting colorama-0.4.6-pyhd8ed1ab_1.conda Extracting distro-1.9.0-pyhd8ed1ab_1.conda Extracting frozendict-2.4.6-py312h66e93f0_0.conda Extracting hpack-4.1.0-pyhd8ed1ab_0.conda Extracting hyperframe-6.1.0-pyhd8ed1ab_0.conda Extracting idna-3.10-pyhd8ed1ab_1.conda Extracting jsonpointer-3.0.0-py312h7900ff3_1.conda Extracting libmambapy-2.1.1-py312h07448e0_0.conda Extracting mamba-2.1.1-had4a41a_0.conda Extracting packaging-25.0-pyh29332c3_1.conda Extracting platformdirs-4.3.8-pyhe01879c_0.conda Extracting pluggy-1.6.0-pyhd8ed1ab_0.conda Extracting pycosat-0.6.6-py312h66e93f0_2.conda Extracting pycparser-2.22-pyh29332c3_1.conda Extracting pysocks-1.7.1-pyha55dd90_7.conda Extracting ruamel.yaml.clib-0.2.8-py312h66e93f0_1.conda Extracting setuptools-80.9.0-pyhff2d567_0.conda Extracting truststore-0.10.1-pyh29332c3_0.conda Extracting wheel-0.45.1-pyhd8ed1ab_1.conda Extracting cffi-1.17.1-py312h06ac9bb_0.conda Extracting h2-4.2.0-pyhd8ed1ab_0.conda Extracting jsonpatch-1.33-pyhd8ed1ab_1.conda Extracting pip-25.1.1-pyh8b19718_0.conda Extracting ruamel.yaml-0.18.14-py312h66e93f0_0.conda Extracting tqdm-4.67.1-pyhd8ed1ab_1.conda Extracting zstandard-0.23.0-py312h66e93f0_2.conda Extracting conda-package-streaming-0.12.0-pyhd8ed1ab_0.conda Extracting urllib3-2.5.0-pyhd8ed1ab_0.conda Extracting requests-2.32.4-pyhd8ed1ab_0.conda Extracting conda-package-handling-2.4.0-pyh7900ff3_2.conda Extracting conda-25.3.1-py312h7900ff3_1.conda Extracting conda-libmamba-solver-25.3.0-pyhd8ed1ab_0.conda Installing base environment... Transaction Prefix: /home/pkgeval/.julia/conda/3/x86_64 Updating specs: - _libgcc_mutex==0.1=conda_forge - ca-certificates==2025.7.14=hbd8a1cb_0 - ld_impl_linux-64==2.44=h1423503_1 - libgomp==15.1.0=h767d61c_3 - pybind11-abi==4=hd8ed1ab_3 - python_abi==3.12=8_cp312 - tzdata==2025b=h78e105d_0 - _openmp_mutex==4.5=2_gnu - libgcc==15.1.0=h767d61c_3 - c-ares==1.34.5=hb9d3cd8_0 - libexpat==2.7.1=hecca717_0 - libffi==3.4.6=h2dba641_1 - libgcc-ng==15.1.0=h69a702a_3 - libiconv==1.18=h4ce23a2_1 - liblzma==5.8.1=hb9d3cd8_2 - libnsl==2.0.1=hb9d3cd8_1 - libstdcxx==15.1.0=h8f9b012_3 - libzlib==1.3.1=hb9d3cd8_2 - ncurses==6.5=h2d0b736_3 - openssl==3.5.1=h7b32b05_0 - reproc==14.2.5.0post0=hb9d3cd8_0 - bzip2==1.0.8=h4bc722e_7 - cpp-expected==1.1.0=hff21bea_1 - fmt==11.1.4=h07f6e7f_1 - keyutils==1.6.1=h166bdaf_0 - libedit==3.1.20250104=pl5321h7949ede_0 - libev==4.33=hd590300_2 - libsolv==0.7.34=h9463b59_0 - libssh2==1.11.1=hcf80075_0 - libstdcxx-ng==15.1.0=h4852527_3 - libuuid==2.38.1=h0b41bf4_0 - libxcrypt==4.4.36=hd590300_1 - lz4-c==1.10.0=h5888daf_1 - lzo==2.10=hd590300_1001 - readline==8.2=h8c095d6_2 - reproc-cpp==14.2.5.0post0=h5888daf_0 - simdjson==3.12.3=h84d6215_0 - tk==8.6.13=noxft_hd72426e_102 - yaml-cpp==0.8.0=h3f2d84a_0 - zstd==1.5.7=hb8e6e7a_2 - icu==75.1=he02047a_0 - krb5==1.21.3=h659f571_0 - libnghttp2==1.64.0=h161d5f1_0 - nlohmann_json==3.11.3=he02047a_1 - libcurl==8.14.1=h332b0f4_0 - libsqlite==3.50.3=hee844dc_1 - libxml2==2.13.8=h4bc477f_0 - libarchive==3.7.7=h75ea233_4 - python==3.12.11=h9e4cc4f_0_cpython - libmamba==2.1.1=h430c389_0 - menuinst==2.3.1=py312h7900ff3_0 - archspec==0.2.5=pyhd8ed1ab_0 - boltons==25.0.0=pyhd8ed1ab_0 - brotli-python==1.1.0=py312h2ec8cdc_3 - certifi==2025.7.14=pyhd8ed1ab_0 - charset-normalizer==3.4.2=pyhd8ed1ab_0 - colorama==0.4.6=pyhd8ed1ab_1 - distro==1.9.0=pyhd8ed1ab_1 - frozendict==2.4.6=py312h66e93f0_0 - hpack==4.1.0=pyhd8ed1ab_0 - hyperframe==6.1.0=pyhd8ed1ab_0 - idna==3.10=pyhd8ed1ab_1 - jsonpointer==3.0.0=py312h7900ff3_1 - libmambapy==2.1.1=py312h07448e0_0 - mamba==2.1.1=had4a41a_0 - packaging==25.0=pyh29332c3_1 - platformdirs==4.3.8=pyhe01879c_0 - pluggy==1.6.0=pyhd8ed1ab_0 - pycosat==0.6.6=py312h66e93f0_2 - pycparser==2.22=pyh29332c3_1 - pysocks==1.7.1=pyha55dd90_7 - ruamel.yaml.clib==0.2.8=py312h66e93f0_1 - setuptools==80.9.0=pyhff2d567_0 - truststore==0.10.1=pyh29332c3_0 - wheel==0.45.1=pyhd8ed1ab_1 - cffi==1.17.1=py312h06ac9bb_0 - h2==4.2.0=pyhd8ed1ab_0 - jsonpatch==1.33=pyhd8ed1ab_1 - pip==25.1.1=pyh8b19718_0 - ruamel.yaml==0.18.14=py312h66e93f0_0 - tqdm==4.67.1=pyhd8ed1ab_1 - zstandard==0.23.0=py312h66e93f0_2 - conda-package-streaming==0.12.0=pyhd8ed1ab_0 - urllib3==2.5.0=pyhd8ed1ab_0 - requests==2.32.4=pyhd8ed1ab_0 - conda-package-handling==2.4.0=pyh7900ff3_2 - conda==25.3.1=py312h7900ff3_1 - conda-libmamba-solver==25.3.0=pyhd8ed1ab_0 Package Version Build Channel Size ───────────────────────────────────────────────────────────────────────────────────── Install: ───────────────────────────────────────────────────────────────────────────────────── + _libgcc_mutex 0.1 conda_forge conda-forge + _openmp_mutex 4.5 2_gnu conda-forge + archspec 0.2.5 pyhd8ed1ab_0 conda-forge + boltons 25.0.0 pyhd8ed1ab_0 conda-forge + brotli-python 1.1.0 py312h2ec8cdc_3 conda-forge + bzip2 1.0.8 h4bc722e_7 conda-forge + c-ares 1.34.5 hb9d3cd8_0 conda-forge + ca-certificates 2025.7.14 hbd8a1cb_0 conda-forge + certifi 2025.7.14 pyhd8ed1ab_0 conda-forge + cffi 1.17.1 py312h06ac9bb_0 conda-forge + charset-normalizer 3.4.2 pyhd8ed1ab_0 conda-forge + colorama 0.4.6 pyhd8ed1ab_1 conda-forge + conda 25.3.1 py312h7900ff3_1 conda-forge + conda-libmamba-solver 25.3.0 pyhd8ed1ab_0 conda-forge + conda-package-handling 2.4.0 pyh7900ff3_2 conda-forge + conda-package-streaming 0.12.0 pyhd8ed1ab_0 conda-forge + cpp-expected 1.1.0 hff21bea_1 conda-forge + distro 1.9.0 pyhd8ed1ab_1 conda-forge + fmt 11.1.4 h07f6e7f_1 conda-forge + frozendict 2.4.6 py312h66e93f0_0 conda-forge + h2 4.2.0 pyhd8ed1ab_0 conda-forge + hpack 4.1.0 pyhd8ed1ab_0 conda-forge + hyperframe 6.1.0 pyhd8ed1ab_0 conda-forge + icu 75.1 he02047a_0 conda-forge + idna 3.10 pyhd8ed1ab_1 conda-forge + jsonpatch 1.33 pyhd8ed1ab_1 conda-forge + jsonpointer 3.0.0 py312h7900ff3_1 conda-forge + keyutils 1.6.1 h166bdaf_0 conda-forge + krb5 1.21.3 h659f571_0 conda-forge + ld_impl_linux-64 2.44 h1423503_1 conda-forge + libarchive 3.7.7 h75ea233_4 conda-forge + libcurl 8.14.1 h332b0f4_0 conda-forge + libedit 3.1.20250104 pl5321h7949ede_0 conda-forge + libev 4.33 hd590300_2 conda-forge + libexpat 2.7.1 hecca717_0 conda-forge + libffi 3.4.6 h2dba641_1 conda-forge + libgcc 15.1.0 h767d61c_3 conda-forge + libgcc-ng 15.1.0 h69a702a_3 conda-forge + libgomp 15.1.0 h767d61c_3 conda-forge + libiconv 1.18 h4ce23a2_1 conda-forge + liblzma 5.8.1 hb9d3cd8_2 conda-forge + libmamba 2.1.1 h430c389_0 conda-forge + libmambapy 2.1.1 py312h07448e0_0 conda-forge + libnghttp2 1.64.0 h161d5f1_0 conda-forge + libnsl 2.0.1 hb9d3cd8_1 conda-forge + libsolv 0.7.34 h9463b59_0 conda-forge + libsqlite 3.50.3 hee844dc_1 conda-forge + libssh2 1.11.1 hcf80075_0 conda-forge + libstdcxx 15.1.0 h8f9b012_3 conda-forge + libstdcxx-ng 15.1.0 h4852527_3 conda-forge + libuuid 2.38.1 h0b41bf4_0 conda-forge + libxcrypt 4.4.36 hd590300_1 conda-forge + libxml2 2.13.8 h4bc477f_0 conda-forge + libzlib 1.3.1 hb9d3cd8_2 conda-forge + lz4-c 1.10.0 h5888daf_1 conda-forge + lzo 2.10 hd590300_1001 conda-forge + mamba 2.1.1 had4a41a_0 conda-forge + menuinst 2.3.1 py312h7900ff3_0 conda-forge + ncurses 6.5 h2d0b736_3 conda-forge + nlohmann_json 3.11.3 he02047a_1 conda-forge + openssl 3.5.1 h7b32b05_0 conda-forge + packaging 25.0 pyh29332c3_1 conda-forge + pip 25.1.1 pyh8b19718_0 conda-forge + platformdirs 4.3.8 pyhe01879c_0 conda-forge + pluggy 1.6.0 pyhd8ed1ab_0 conda-forge + pybind11-abi 4 hd8ed1ab_3 conda-forge + pycosat 0.6.6 py312h66e93f0_2 conda-forge + pycparser 2.22 pyh29332c3_1 conda-forge + pysocks 1.7.1 pyha55dd90_7 conda-forge + python 3.12.11 h9e4cc4f_0_cpython conda-forge + python_abi 3.12 8_cp312 conda-forge + readline 8.2 h8c095d6_2 conda-forge + reproc 14.2.5.post0 hb9d3cd8_0 conda-forge + reproc-cpp 14.2.5.post0 h5888daf_0 conda-forge + requests 2.32.4 pyhd8ed1ab_0 conda-forge + ruamel.yaml 0.18.14 py312h66e93f0_0 conda-forge + ruamel.yaml.clib 0.2.8 py312h66e93f0_1 conda-forge + setuptools 80.9.0 pyhff2d567_0 conda-forge + simdjson 3.12.3 h84d6215_0 conda-forge + tk 8.6.13 noxft_hd72426e_102 conda-forge + tqdm 4.67.1 pyhd8ed1ab_1 conda-forge + truststore 0.10.1 pyh29332c3_0 conda-forge + tzdata 2025b h78e105d_0 conda-forge + urllib3 2.5.0 pyhd8ed1ab_0 conda-forge + wheel 0.45.1 pyhd8ed1ab_1 conda-forge + yaml-cpp 0.8.0 h3f2d84a_0 conda-forge + zstandard 0.23.0 py312h66e93f0_2 conda-forge + zstd 1.5.7 hb8e6e7a_2 conda-forge Summary: Install: 88 packages Total download: 0 B ───────────────────────────────────────────────────────────────────────────────────── Transaction starting Linking _libgcc_mutex-0.1-conda_forge Linking ca-certificates-2025.7.14-hbd8a1cb_0 Linking ld_impl_linux-64-2.44-h1423503_1 Linking libgomp-15.1.0-h767d61c_3 Linking pybind11-abi-4-hd8ed1ab_3 Linking python_abi-3.12-8_cp312 Linking tzdata-2025b-h78e105d_0 Linking _openmp_mutex-4.5-2_gnu Linking libgcc-15.1.0-h767d61c_3 Linking c-ares-1.34.5-hb9d3cd8_0 Linking libexpat-2.7.1-hecca717_0 Linking libffi-3.4.6-h2dba641_1 Linking libgcc-ng-15.1.0-h69a702a_3 Linking libiconv-1.18-h4ce23a2_1 Linking liblzma-5.8.1-hb9d3cd8_2 Linking libnsl-2.0.1-hb9d3cd8_1 Linking libstdcxx-15.1.0-h8f9b012_3 Linking libzlib-1.3.1-hb9d3cd8_2 Linking ncurses-6.5-h2d0b736_3 Linking openssl-3.5.1-h7b32b05_0 Linking reproc-14.2.5.post0-hb9d3cd8_0 Linking bzip2-1.0.8-h4bc722e_7 Linking cpp-expected-1.1.0-hff21bea_1 Linking fmt-11.1.4-h07f6e7f_1 Linking keyutils-1.6.1-h166bdaf_0 Linking libedit-3.1.20250104-pl5321h7949ede_0 Linking libev-4.33-hd590300_2 Linking libsolv-0.7.34-h9463b59_0 Linking libssh2-1.11.1-hcf80075_0 Linking libstdcxx-ng-15.1.0-h4852527_3 Linking libuuid-2.38.1-h0b41bf4_0 Linking libxcrypt-4.4.36-hd590300_1 Linking lz4-c-1.10.0-h5888daf_1 Linking lzo-2.10-hd590300_1001 Linking readline-8.2-h8c095d6_2 Linking reproc-cpp-14.2.5.post0-h5888daf_0 Linking simdjson-3.12.3-h84d6215_0 Linking tk-8.6.13-noxft_hd72426e_102 Linking yaml-cpp-0.8.0-h3f2d84a_0 Linking zstd-1.5.7-hb8e6e7a_2 Linking icu-75.1-he02047a_0 Linking krb5-1.21.3-h659f571_0 Linking libnghttp2-1.64.0-h161d5f1_0 Linking nlohmann_json-3.11.3-he02047a_1 Linking libcurl-8.14.1-h332b0f4_0 Linking libsqlite-3.50.3-hee844dc_1 Linking libxml2-2.13.8-h4bc477f_0 Linking libarchive-3.7.7-h75ea233_4 Linking python-3.12.11-h9e4cc4f_0_cpython Linking libmamba-2.1.1-h430c389_0 Linking menuinst-2.3.1-py312h7900ff3_0 Linking archspec-0.2.5-pyhd8ed1ab_0 Linking boltons-25.0.0-pyhd8ed1ab_0 Linking brotli-python-1.1.0-py312h2ec8cdc_3 Linking certifi-2025.7.14-pyhd8ed1ab_0 Linking charset-normalizer-3.4.2-pyhd8ed1ab_0 Linking colorama-0.4.6-pyhd8ed1ab_1 Linking distro-1.9.0-pyhd8ed1ab_1 Linking frozendict-2.4.6-py312h66e93f0_0 Linking hpack-4.1.0-pyhd8ed1ab_0 Linking hyperframe-6.1.0-pyhd8ed1ab_0 Linking idna-3.10-pyhd8ed1ab_1 Linking jsonpointer-3.0.0-py312h7900ff3_1 Linking libmambapy-2.1.1-py312h07448e0_0 Linking mamba-2.1.1-had4a41a_0 Linking packaging-25.0-pyh29332c3_1 Linking platformdirs-4.3.8-pyhe01879c_0 Linking pluggy-1.6.0-pyhd8ed1ab_0 Linking pycosat-0.6.6-py312h66e93f0_2 Linking pycparser-2.22-pyh29332c3_1 Linking pysocks-1.7.1-pyha55dd90_7 Linking ruamel.yaml.clib-0.2.8-py312h66e93f0_1 Linking setuptools-80.9.0-pyhff2d567_0 Linking truststore-0.10.1-pyh29332c3_0 Linking wheel-0.45.1-pyhd8ed1ab_1 Linking cffi-1.17.1-py312h06ac9bb_0 Linking h2-4.2.0-pyhd8ed1ab_0 Linking jsonpatch-1.33-pyhd8ed1ab_1 Linking pip-25.1.1-pyh8b19718_0 Linking ruamel.yaml-0.18.14-py312h66e93f0_0 Linking tqdm-4.67.1-pyhd8ed1ab_1 Linking zstandard-0.23.0-py312h66e93f0_2 Linking conda-package-streaming-0.12.0-pyhd8ed1ab_0 Linking urllib3-2.5.0-pyhd8ed1ab_0 Linking requests-2.32.4-pyhd8ed1ab_0 Linking conda-package-handling-2.4.0-pyh7900ff3_2 Linking conda-25.3.1-py312h7900ff3_1 Linking conda-libmamba-solver-25.3.0-pyhd8ed1ab_0 Transaction finished installation finished. [ Info: Running `conda create -q -y -p /home/pkgeval/.julia/conda/3/x86_64/envs/BiobakeryUtils` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64/envs/BiobakeryUtils Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ Info: Running `conda config --add channels bioconda --file /home/pkgeval/.julia/conda/3/x86_64/envs/BiobakeryUtils/condarc-julia.yml --force` in BiobakeryUtils environment [ Info: Running `conda config --add channels conda-forge --file /home/pkgeval/.julia/conda/3/x86_64/envs/BiobakeryUtils/condarc-julia.yml --force` in BiobakeryUtils environment Warning: 'conda-forge' already in 'channels' list, moving to the top [ Info: Running `conda config --add channels biobakery --file /home/pkgeval/.julia/conda/3/x86_64/envs/BiobakeryUtils/condarc-julia.yml --force` in BiobakeryUtils environment [ Info: Running `conda install -q -y humann` in BiobakeryUtils environment Channels: - biobakery - conda-forge - bioconda Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64/envs/BiobakeryUtils added / updated specs: - humann The following packages will be downloaded: package | build ---------------------------|----------------- _python_abi3_support-1.0 | hd8ed1ab_2 8 KB conda-forge _r-mutex-1.0.1 | anacondar_1 3 KB conda-forge anyio-4.11.0 | pyhcf101f3_0 135 KB conda-forge argcomplete-3.6.2 | pyhd8ed1ab_0 41 KB conda-forge argon2-cffi-25.1.0 | pyhd8ed1ab_0 18 KB conda-forge argon2-cffi-bindings-25.1.0| py312h4c3975b_1 35 KB conda-forge arrow-1.3.0 | pyhd8ed1ab_1 98 KB conda-forge asttokens-3.0.0 | pyhd8ed1ab_1 28 KB conda-forge async-lru-2.0.5 | pyh29332c3_0 17 KB conda-forge attrs-25.4.0 | pyh71513ae_0 59 KB conda-forge babel-2.17.0 | pyhd8ed1ab_0 6.6 MB conda-forge bcbio-gff-0.7.1 | pyhdfd78af_3 24 KB bioconda beautifulsoup4-4.14.2 | pyha770c72_0 87 KB conda-forge binutils_impl_linux-64-2.44| hdf8817f_2 3.6 MB conda-forge bioconductor-biobase-2.66.0| r44h3df3fcb_0 2.6 MB bioconda bioconductor-biocgenerics-0.52.0| r44hdfd78af_3 678 KB bioconda bioconductor-biomformat-1.34.0| r44hdfd78af_0 598 KB bioconda bioconductor-biostrings-2.74.0| r44h3df3fcb_1 13.8 MB bioconda bioconductor-data-packages-20250625| hdfd78af_0 250 KB bioconda bioconductor-genomeinfodb-1.42.0| r44hdfd78af_2 4.2 MB bioconda bioconductor-genomeinfodbdata-1.2.13| r44hdfd78af_0 8 KB bioconda bioconductor-iranges-2.40.0| r44h3df3fcb_2 2.5 MB bioconda bioconductor-microbiome-1.28.0| r44hdfd78af_0 1.0 MB bioconda bioconductor-multtest-2.62.0| r44h3df3fcb_1 893 KB bioconda bioconductor-phyloseq-1.50.0| r44hdfd78af_0 6.6 MB bioconda bioconductor-rhdf5-2.50.0 | r44h77050f0_1 3.1 MB bioconda bioconductor-rhdf5filters-1.18.0| r44h77050f0_1 554 KB bioconda bioconductor-rhdf5lib-1.28.0| r44h15a9599_0 3.9 MB bioconda bioconductor-s4vectors-0.44.0| r44h3df3fcb_2 2.7 MB bioconda bioconductor-ucsc.utils-1.2.0| r44h9ee0642_1 308 KB bioconda bioconductor-xvector-0.46.0| r44h15a9599_2 726 KB bioconda bioconductor-zlibbioc-1.52.0| r44h3df3fcb_2 249 KB bioconda biom-format-2.1.17 | py312h5253ce2_1 9.5 MB conda-forge biopython-1.85 | py312h4c3975b_2 3.3 MB conda-forge blast-2.17.0 | h66d330f_0 80.9 MB bioconda bleach-6.2.0 | pyh29332c3_4 138 KB conda-forge bleach-with-css-6.2.0 | h82add2a_4 4 KB conda-forge bowtie2-2.5.4 | he96a11b_6 14.3 MB bioconda brotli-1.1.0 | hb03c661_4 19 KB conda-forge brotli-bin-1.1.0 | hb03c661_4 19 KB conda-forge brotli-python-1.1.0 | py312h1289d80_4 346 KB conda-forge bwidget-1.10.1 | ha770c72_1 127 KB conda-forge bx-python-0.14.0 | py312h5e9d817_0 1.1 MB bioconda bzip2-1.0.8 | hda65f42_8 254 KB conda-forge ca-certificates-2025.10.5 | hbd8a1cb_0 152 KB conda-forge cached-property-1.5.2 | hd8ed1ab_1 4 KB conda-forge cached_property-1.5.2 | pyha770c72_1 11 KB conda-forge cairo-1.18.4 | h3394656_0 955 KB conda-forge capnproto-1.0.2 | h766bdaa_3 3.9 MB conda-forge certifi-2025.10.5 | pyhd8ed1ab_0 156 KB conda-forge cffi-2.0.0 | py312h35888ee_0 290 KB conda-forge charset-normalizer-3.4.3 | pyhd8ed1ab_0 50 KB conda-forge click-8.3.0 | pyh707e725_0 89 KB conda-forge cmseq-1.0.4 | pyhb7b1952_0 25 KB bioconda comm-0.2.3 | pyhe01879c_0 14 KB conda-forge contourpy-1.3.3 | py312hd9148b4_2 289 KB conda-forge cpython-3.12.11 | py312hd8ed1ab_0 45 KB conda-forge curl-8.14.1 | h332b0f4_0 176 KB conda-forge cycler-0.12.1 | pyhd8ed1ab_1 13 KB conda-forge debugpy-1.8.17 | py312h8285ef7_0 2.7 MB conda-forge decorator-5.2.1 | pyhd8ed1ab_0 14 KB conda-forge defusedxml-0.7.1 | pyhd8ed1ab_0 23 KB conda-forge dendropy-5.0.8 | pyhdfd78af_1 327 KB bioconda diamond-2.1.13 | h13889ed_0 19.6 MB bioconda entrez-direct-24.0 | he881be0_0 16.3 MB bioconda exceptiongroup-1.3.0 | pyhd8ed1ab_0 21 KB conda-forge executing-2.2.1 | pyhd8ed1ab_0 30 KB conda-forge fasttree-2.2.0 | h7b50bb2_0 200 KB bioconda font-ttf-dejavu-sans-mono-2.37| hab24e00_0 388 KB conda-forge font-ttf-inconsolata-3.000 | h77eed37_0 94 KB conda-forge font-ttf-source-code-pro-2.038| h77eed37_0 684 KB conda-forge font-ttf-ubuntu-0.83 | h77eed37_3 1.5 MB conda-forge fontconfig-2.15.0 | h7e30c49_1 259 KB conda-forge fonts-conda-ecosystem-1 | 0 4 KB conda-forge fonts-conda-forge-1 | 0 4 KB conda-forge fonttools-4.60.1 | py312h8a5da7c_0 2.8 MB conda-forge fqdn-1.5.1 | pyhd8ed1ab_1 16 KB conda-forge freetype-2.14.1 | ha770c72_0 169 KB conda-forge fribidi-1.0.16 | hb03c661_0 60 KB conda-forge gawk-5.3.1 | hcd3d067_0 1.1 MB conda-forge gcc_impl_linux-64-15.2.0 | hcacfade_7 74.2 MB conda-forge gfortran_impl_linux-64-15.2.0| h1b0a18f_7 17.6 MB conda-forge glpk-5.0 | h445213a_0 1023 KB conda-forge gmp-6.3.0 | hac33072_2 449 KB conda-forge graphite2-1.3.14 | hecca717_2 97 KB conda-forge gsl-2.7 | he838d99_0 3.2 MB conda-forge gxx_impl_linux-64-15.2.0 | h54ccb8d_7 15.5 MB conda-forge h11-0.16.0 | pyhd8ed1ab_0 37 KB conda-forge h2-4.3.0 | pyhcf101f3_0 94 KB conda-forge h5py-3.14.0 |nompi_py312ha4f8f14_101 1.3 MB conda-forge harfbuzz-12.1.0 | h15599e2_0 2.0 MB conda-forge hclust2-1.0.0 | pyh864c0ab_1 15 KB bioconda hdf5-1.14.6 |nompi_h6e4c0c1_103 3.5 MB conda-forge htslib-1.22.1 | h566b1c6_0 3.1 MB bioconda httpcore-1.0.9 | pyh29332c3_0 48 KB conda-forge httpx-0.28.1 | pyhd8ed1ab_0 62 KB conda-forge humann-4.0.0a1 | py312_0 81.6 MB biobakery idna-3.11 | pyhd8ed1ab_0 50 KB conda-forge importlib-metadata-8.7.0 | pyhe01879c_1 34 KB conda-forge ipykernel-6.30.1 | pyh82676e8_0 119 KB conda-forge ipython-9.6.0 | pyhfa0c392_0 624 KB conda-forge ipython_pygments_lexers-1.1.1| pyhd8ed1ab_0 14 KB conda-forge iqtree-3.0.1 | h503566f_0 4.2 MB bioconda isoduration-20.11.0 | pyhd8ed1ab_1 19 KB conda-forge jedi-0.19.2 | 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conda-forge r-rjson-0.2.23 | r44h3697838_1 116 KB conda-forge r-rlang-1.1.6 | r44h3697838_1 1.5 MB conda-forge r-rmarkdown-2.30 | r44hc72bb7e_0 2.0 MB conda-forge r-robustbase-0.99_6 | r44h11cdb10_1 3.0 MB conda-forge r-rpart-4.1.24 | r44h54b55ab_1 688 KB conda-forge r-rstudioapi-0.17.1 | r44hc72bb7e_1 311 KB conda-forge r-rtsne-0.17 | r44hf1899b2_3 119 KB conda-forge r-rvest-1.0.5 | r44hc72bb7e_1 298 KB conda-forge r-s7-0.2.0 | r44h54b55ab_1 304 KB conda-forge r-sass-0.4.10 | r44h3697838_1 2.2 MB conda-forge r-scales-1.4.0 | r44hc72bb7e_1 763 KB conda-forge r-selectr-0.4_2 | r44hc72bb7e_5 413 KB conda-forge r-shape-1.4.6.1 | r44ha770c72_2 748 KB conda-forge r-shiny-1.11.1 | r44h785f33e_1 3.5 MB conda-forge r-slam-0.1_55 | r44h7b2432b_1 196 KB conda-forge r-sourcetools-0.1.7_1 | r44h3697838_3 53 KB conda-forge r-sp-2.2_0 | r44h54b55ab_1 4.4 MB conda-forge r-sparsevctrs-0.3.4 | r44h54b55ab_1 200 KB conda-forge r-spatial-7.3_18 | r44h54b55ab_1 153 KB conda-forge r-squarem-2021.1 | 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conda-forge r-uuid-1.2_1 | r44h54b55ab_1 55 KB conda-forge r-vctrs-0.6.5 | r44h3697838_2 1.2 MB conda-forge r-vegan-2.7_2 | r44h11cdb10_0 2.9 MB conda-forge r-vipor-0.4.7 | r44hc72bb7e_2 4.3 MB conda-forge r-viridislite-0.4.2 | r44hc72bb7e_3 1.2 MB conda-forge r-vroom-1.6.6 | r44h3697838_0 867 KB conda-forge r-withr-3.0.2 | r44hc72bb7e_1 230 KB conda-forge r-xfun-0.53 | r44h3697838_1 569 KB conda-forge r-xml2-1.4.0 | r44he78afff_2 346 KB conda-forge r-xtable-1.8_4 | r44hc72bb7e_7 687 KB conda-forge r-xts-0.14.1 | r44h54b55ab_1 1.2 MB conda-forge r-yaml-2.3.10 | r44h54b55ab_1 117 KB conda-forge r-zip-2.3.3 | r44h54b55ab_1 153 KB conda-forge r-zoo-1.8_14 | r44h54b55ab_1 995 KB conda-forge raxml-8.2.13 | h7b50bb2_3 3.1 MB bioconda referencing-0.36.2 | pyh29332c3_0 50 KB conda-forge requests-2.32.5 | pyhd8ed1ab_0 58 KB conda-forge rfc3339-validator-0.1.4 | pyhd8ed1ab_1 10 KB conda-forge rfc3986-validator-0.1.1 | pyh9f0ad1d_0 8 KB conda-forge rfc3987-syntax-1.1.0 | pyhe01879c_1 22 KB conda-forge rpds-py-0.27.1 | py312h868fb18_1 380 KB conda-forge samtools-1.22.1 | h96c455f_0 488 KB bioconda scipy-1.16.2 | py312h7a1785b_0 16.3 MB conda-forge seaborn-0.13.2 | hd8ed1ab_3 7 KB conda-forge seaborn-base-0.13.2 | pyhd8ed1ab_3 223 KB conda-forge sed-4.9 | h6688a6e_0 224 KB conda-forge send2trash-1.8.3 | pyh0d859eb_1 22 KB conda-forge six-1.17.0 | pyhe01879c_1 18 KB conda-forge sniffio-1.3.1 | pyhd8ed1ab_1 15 KB conda-forge soupsieve-2.8 | pyhd8ed1ab_0 37 KB conda-forge stack_data-0.6.3 | pyhd8ed1ab_1 26 KB conda-forge statsmodels-0.14.5 | py312h4f23490_1 11.5 MB conda-forge sysroot_linux-64-2.34 | h087de78_2 38.0 MB conda-forge terminado-0.18.1 | pyh0d859eb_0 22 KB conda-forge tinycss2-1.4.0 | pyhd8ed1ab_0 28 KB conda-forge tktable-2.10 | h8d826fa_7 90 KB conda-forge toml-0.10.2 | pyhd8ed1ab_1 22 KB conda-forge tomli-2.3.0 | pyhcf101f3_0 20 KB conda-forge tomlkit-0.13.3 | pyha770c72_0 38 KB conda-forge tornado-6.5.2 | py312h4c3975b_1 831 KB conda-forge traitlets-5.14.3 | pyhd8ed1ab_1 107 KB conda-forge trimal-1.5.0 | h9948957_2 211 KB bioconda types-python-dateutil-2.9.0.20251008| pyhd8ed1ab_0 24 KB conda-forge typing-extensions-4.15.0 | h396c80c_0 89 KB conda-forge typing_extensions-4.15.0 | pyhcf101f3_0 50 KB conda-forge typing_utils-0.1.0 | pyhd8ed1ab_1 15 KB conda-forge unicodedata2-16.0.0 | py312h4c3975b_1 395 KB conda-forge uri-template-1.3.0 | pyhd8ed1ab_1 23 KB conda-forge wcwidth-0.2.14 | pyhd8ed1ab_0 33 KB conda-forge webcolors-24.11.1 | pyhd8ed1ab_0 18 KB conda-forge webencodings-0.5.1 | pyhd8ed1ab_3 15 KB conda-forge websocket-client-1.9.0 | pyhd8ed1ab_0 60 KB conda-forge wget-1.21.4 | hda4d442_0 752 KB conda-forge xmltodict-1.0.2 | pyhcf101f3_0 20 KB conda-forge xorg-libice-1.1.2 | hb9d3cd8_0 57 KB conda-forge xorg-libsm-1.2.6 | he73a12e_0 27 KB conda-forge xorg-libx11-1.8.12 | h4f16b4b_0 816 KB conda-forge xorg-libxau-1.0.12 | hb9d3cd8_0 14 KB conda-forge xorg-libxdmcp-1.1.5 | hb9d3cd8_0 19 KB conda-forge xorg-libxext-1.3.6 | hb9d3cd8_0 49 KB conda-forge xorg-libxrender-0.9.12 | hb9d3cd8_0 32 KB conda-forge xorg-libxt-1.3.1 | hb9d3cd8_0 371 KB conda-forge yaml-0.2.5 | h280c20c_3 83 KB conda-forge yq-3.4.3 | pyhe01879c_2 29 KB conda-forge zeromq-4.3.5 | h387f397_9 303 KB conda-forge zipp-3.23.0 | pyhd8ed1ab_0 22 KB conda-forge zlib-1.3.1 | hb9d3cd8_2 90 KB conda-forge zstandard-0.25.0 | py312h5253ce2_0 456 KB conda-forge ------------------------------------------------------------ Total: 886.4 MB The following NEW packages will be INSTALLED: _libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu _python_abi3_supp~ conda-forge/noarch::_python_abi3_support-1.0-hd8ed1ab_2 _r-mutex conda-forge/noarch::_r-mutex-1.0.1-anacondar_1 anyio conda-forge/noarch::anyio-4.11.0-pyhcf101f3_0 argcomplete conda-forge/noarch::argcomplete-3.6.2-pyhd8ed1ab_0 argon2-cffi conda-forge/noarch::argon2-cffi-25.1.0-pyhd8ed1ab_0 argon2-cffi-bindi~ 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bioconda/noarch::bioconductor-genomeinfodb-1.42.0-r44hdfd78af_2 bioconductor-geno~ bioconda/noarch::bioconductor-genomeinfodbdata-1.2.13-r44hdfd78af_0 bioconductor-iran~ bioconda/linux-64::bioconductor-iranges-2.40.0-r44h3df3fcb_2 bioconductor-micr~ bioconda/noarch::bioconductor-microbiome-1.28.0-r44hdfd78af_0 bioconductor-mult~ bioconda/linux-64::bioconductor-multtest-2.62.0-r44h3df3fcb_1 bioconductor-phyl~ bioconda/noarch::bioconductor-phyloseq-1.50.0-r44hdfd78af_0 bioconductor-rhdf5 bioconda/linux-64::bioconductor-rhdf5-2.50.0-r44h77050f0_1 bioconductor-rhdf~ bioconda/linux-64::bioconductor-rhdf5filters-1.18.0-r44h77050f0_1 bioconductor-rhdf~ bioconda/linux-64::bioconductor-rhdf5lib-1.28.0-r44h15a9599_0 bioconductor-s4ve~ bioconda/linux-64::bioconductor-s4vectors-0.44.0-r44h3df3fcb_2 bioconductor-ucsc~ bioconda/linux-64::bioconductor-ucsc.utils-1.2.0-r44h9ee0642_1 bioconductor-xvec~ bioconda/linux-64::bioconductor-xvector-0.46.0-r44h15a9599_2 bioconductor-zlib~ 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conda-forge/noarch::cached_property-1.5.2-pyha770c72_1 cairo conda-forge/linux-64::cairo-1.18.4-h3394656_0 capnproto conda-forge/linux-64::capnproto-1.0.2-h766bdaa_3 certifi conda-forge/noarch::certifi-2025.10.5-pyhd8ed1ab_0 cffi conda-forge/linux-64::cffi-2.0.0-py312h35888ee_0 charset-normalizer conda-forge/noarch::charset-normalizer-3.4.3-pyhd8ed1ab_0 click conda-forge/noarch::click-8.3.0-pyh707e725_0 cmseq bioconda/noarch::cmseq-1.0.4-pyhb7b1952_0 comm conda-forge/noarch::comm-0.2.3-pyhe01879c_0 contourpy conda-forge/linux-64::contourpy-1.3.3-py312hd9148b4_2 cpython conda-forge/noarch::cpython-3.12.11-py312hd8ed1ab_0 curl conda-forge/linux-64::curl-8.14.1-h332b0f4_0 cycler conda-forge/noarch::cycler-0.12.1-pyhd8ed1ab_1 debugpy conda-forge/linux-64::debugpy-1.8.17-py312h8285ef7_0 decorator conda-forge/noarch::decorator-5.2.1-pyhd8ed1ab_0 defusedxml conda-forge/noarch::defusedxml-0.7.1-pyhd8ed1ab_0 dendropy bioconda/noarch::dendropy-5.0.8-pyhdfd78af_1 diamond 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conda-forge/noarch::perl-exporter-5.74-pl5321hd8ed1ab_0 perl-exporter-tiny conda-forge/noarch::perl-exporter-tiny-1.002002-pl5321hd8ed1ab_0 perl-extutils-mak~ conda-forge/noarch::perl-extutils-makemaker-7.70-pl5321hd8ed1ab_0 perl-io-compress bioconda/linux-64::perl-io-compress-2.213-pl5321h503566f_0 perl-io-zlib bioconda/noarch::perl-io-zlib-1.15-pl5321hdfd78af_1 perl-json bioconda/noarch::perl-json-4.10-pl5321hdfd78af_1 perl-json-xs bioconda/linux-64::perl-json-xs-4.04-pl5321h9948957_0 perl-list-moreuti~ bioconda/noarch::perl-list-moreutils-0.430-pl5321hdfd78af_0 perl-list-moreuti~ bioconda/linux-64::perl-list-moreutils-xs-0.430-pl5321h7b50bb2_5 perl-parent conda-forge/noarch::perl-parent-0.243-pl5321hd8ed1ab_0 perl-pathtools conda-forge/linux-64::perl-pathtools-3.75-pl5321hb9d3cd8_2 perl-scalar-list-~ conda-forge/linux-64::perl-scalar-list-utils-1.70-pl5321hb03c661_0 perl-storable conda-forge/linux-64::perl-storable-3.15-pl5321hb9d3cd8_2 perl-types-serial~ 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conda-forge/noarch::rfc3339-validator-0.1.4-pyhd8ed1ab_1 rfc3986-validator conda-forge/noarch::rfc3986-validator-0.1.1-pyh9f0ad1d_0 rfc3987-syntax conda-forge/noarch::rfc3987-syntax-1.1.0-pyhe01879c_1 rpds-py conda-forge/linux-64::rpds-py-0.27.1-py312h868fb18_1 samtools bioconda/linux-64::samtools-1.22.1-h96c455f_0 scipy conda-forge/linux-64::scipy-1.16.2-py312h7a1785b_0 seaborn conda-forge/noarch::seaborn-0.13.2-hd8ed1ab_3 seaborn-base conda-forge/noarch::seaborn-base-0.13.2-pyhd8ed1ab_3 sed conda-forge/linux-64::sed-4.9-h6688a6e_0 send2trash conda-forge/noarch::send2trash-1.8.3-pyh0d859eb_1 setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0 six conda-forge/noarch::six-1.17.0-pyhe01879c_1 sniffio conda-forge/noarch::sniffio-1.3.1-pyhd8ed1ab_1 soupsieve conda-forge/noarch::soupsieve-2.8-pyhd8ed1ab_0 stack_data conda-forge/noarch::stack_data-0.6.3-pyhd8ed1ab_1 statsmodels conda-forge/linux-64::statsmodels-0.14.5-py312h4f23490_1 sysroot_linux-64 conda-forge/noarch::sysroot_linux-64-2.34-h087de78_2 terminado conda-forge/noarch::terminado-0.18.1-pyh0d859eb_0 tinycss2 conda-forge/noarch::tinycss2-1.4.0-pyhd8ed1ab_0 tk conda-forge/linux-64::tk-8.6.13-noxft_hd72426e_102 tktable conda-forge/linux-64::tktable-2.10-h8d826fa_7 toml conda-forge/noarch::toml-0.10.2-pyhd8ed1ab_1 tomli conda-forge/noarch::tomli-2.3.0-pyhcf101f3_0 tomlkit conda-forge/noarch::tomlkit-0.13.3-pyha770c72_0 tornado conda-forge/linux-64::tornado-6.5.2-py312h4c3975b_1 traitlets conda-forge/noarch::traitlets-5.14.3-pyhd8ed1ab_1 trimal bioconda/linux-64::trimal-1.5.0-h9948957_2 types-python-date~ conda-forge/noarch::types-python-dateutil-2.9.0.20251008-pyhd8ed1ab_0 typing-extensions conda-forge/noarch::typing-extensions-4.15.0-h396c80c_0 typing_extensions conda-forge/noarch::typing_extensions-4.15.0-pyhcf101f3_0 typing_utils conda-forge/noarch::typing_utils-0.1.0-pyhd8ed1ab_1 tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0 unicodedata2 conda-forge/linux-64::unicodedata2-16.0.0-py312h4c3975b_1 uri-template conda-forge/noarch::uri-template-1.3.0-pyhd8ed1ab_1 urllib3 conda-forge/noarch::urllib3-2.5.0-pyhd8ed1ab_0 wcwidth conda-forge/noarch::wcwidth-0.2.14-pyhd8ed1ab_0 webcolors conda-forge/noarch::webcolors-24.11.1-pyhd8ed1ab_0 webencodings conda-forge/noarch::webencodings-0.5.1-pyhd8ed1ab_3 websocket-client conda-forge/noarch::websocket-client-1.9.0-pyhd8ed1ab_0 wget conda-forge/linux-64::wget-1.21.4-hda4d442_0 wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1 xmltodict conda-forge/noarch::xmltodict-1.0.2-pyhcf101f3_0 xorg-libice conda-forge/linux-64::xorg-libice-1.1.2-hb9d3cd8_0 xorg-libsm conda-forge/linux-64::xorg-libsm-1.2.6-he73a12e_0 xorg-libx11 conda-forge/linux-64::xorg-libx11-1.8.12-h4f16b4b_0 xorg-libxau conda-forge/linux-64::xorg-libxau-1.0.12-hb9d3cd8_0 xorg-libxdmcp conda-forge/linux-64::xorg-libxdmcp-1.1.5-hb9d3cd8_0 xorg-libxext conda-forge/linux-64::xorg-libxext-1.3.6-hb9d3cd8_0 xorg-libxrender conda-forge/linux-64::xorg-libxrender-0.9.12-hb9d3cd8_0 xorg-libxt conda-forge/linux-64::xorg-libxt-1.3.1-hb9d3cd8_0 yaml conda-forge/linux-64::yaml-0.2.5-h280c20c_3 yq conda-forge/noarch::yq-3.4.3-pyhe01879c_2 zeromq conda-forge/linux-64::zeromq-4.3.5-h387f397_9 zipp conda-forge/noarch::zipp-3.23.0-pyhd8ed1ab_0 zlib conda-forge/linux-64::zlib-1.3.1-hb9d3cd8_2 zstandard conda-forge/linux-64::zstandard-0.25.0-py312h5253ce2_0 zstd conda-forge/linux-64::zstd-1.5.7-hb8e6e7a_2 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ Info: Running `conda install -q -y tbb=2020.2` in BiobakeryUtils environment Channels: - biobakery - conda-forge - bioconda Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64/envs/BiobakeryUtils added / updated specs: - tbb=2020.2 The following packages will be downloaded: package | build ---------------------------|----------------- tbb-2020.2 | h4bd325d_4 1.5 MB conda-forge ------------------------------------------------------------ Total: 1.5 MB The following NEW packages will be INSTALLED: tbb conda-forge/linux-64::tbb-2020.2-h4bd325d_4 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done [ Info: Running `conda install -q -y kneaddata` in BiobakeryUtils environment Channels: - biobakery - conda-forge - bioconda Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64/envs/BiobakeryUtils added / updated specs: - kneaddata The following packages will be downloaded: package | build ---------------------------|----------------- alsa-lib-1.2.14 | hb9d3cd8_0 553 KB conda-forge bmtool-3.101 | h503566f_6 73 KB bioconda fastqc-0.12.1 | hdfd78af_0 11.1 MB bioconda giflib-5.2.2 | hd590300_0 75 KB conda-forge kneaddata-0.12.3 | pyhdfd78af_0 402 KB bioconda libcups-2.3.3 | hb8b1518_5 4.3 MB conda-forge openjdk-24.0.2 | h5755bd7_0 111.0 MB conda-forge srprism-2.4.24 | hd6d6fdc_6 557 KB bioconda trf-4.10.0rc2 | h7b50bb2_0 67 KB bioconda trimmomatic-0.40 | hdfd78af_0 193 KB bioconda xorg-libxfixes-6.0.2 | hb03c661_0 20 KB conda-forge xorg-libxi-1.8.2 | hb9d3cd8_0 46 KB conda-forge xorg-libxrandr-1.5.4 | hb9d3cd8_0 29 KB conda-forge xorg-libxtst-1.2.5 | hb9d3cd8_3 32 KB conda-forge ------------------------------------------------------------ Total: 128.4 MB The following NEW packages will be INSTALLED: alsa-lib conda-forge/linux-64::alsa-lib-1.2.14-hb9d3cd8_0 bmtool bioconda/linux-64::bmtool-3.101-h503566f_6 fastqc bioconda/noarch::fastqc-0.12.1-hdfd78af_0 giflib conda-forge/linux-64::giflib-5.2.2-hd590300_0 kneaddata bioconda/noarch::kneaddata-0.12.3-pyhdfd78af_0 libcups conda-forge/linux-64::libcups-2.3.3-hb8b1518_5 openjdk conda-forge/linux-64::openjdk-24.0.2-h5755bd7_0 srprism bioconda/linux-64::srprism-2.4.24-hd6d6fdc_6 trf bioconda/linux-64::trf-4.10.0rc2-h7b50bb2_0 trimmomatic bioconda/noarch::trimmomatic-0.40-hdfd78af_0 xorg-libxfixes conda-forge/linux-64::xorg-libxfixes-6.0.2-hb03c661_0 xorg-libxi conda-forge/linux-64::xorg-libxi-1.8.2-hb9d3cd8_0 xorg-libxrandr conda-forge/linux-64::xorg-libxrandr-1.5.4-hb9d3cd8_0 xorg-libxtst conda-forge/linux-64::xorg-libxtst-1.2.5-hb9d3cd8_3 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done ┌ Warning: Don't forget to add /home/pkgeval/.julia/conda/3/x86_64/envs/BiobakeryUtils/bin to your PATH! │ │ This can be done in a julia session with: │ │ `ENV["PATH"] = ENV["PATH"] * ":" * "/home/pkgeval/.julia/conda/3/x86_64/envs/BiobakeryUtils/bin"`, │ or you can set it in your shell environment. └ @ BiobakeryUtils ~/.julia/packages/BiobakeryUtils/ypFMk/src/utils.jl:29 ERROR: LoadError: TaskFailedException Stacktrace: [1] #wait#575 @ ./task.jl:363 [inlined] [2] wait @ ./task.jl:360 [inlined] [3] retest(args::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}; dry::Bool, stats::Bool, shuffle::Bool, group::Bool, verbose::Bool, recursive::Bool, id::Nothing, strict::Bool, dup::Bool, static::Nothing, load::Bool, seed::Bool, marks::Bool, tag::Vector{Symbol}, spin::Bool, clear::Bool) @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1186 [4] retest(args::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}) @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:750 [5] #runtests#1 @ ~/.julia/packages/InlineTest/NAAjm/src/InlineTest.jl:81 [inlined] [6] runtests() @ Main.BiobakeryUtilsTests ~/.julia/packages/InlineTest/NAAjm/src/InlineTest.jl:80 [7] top-level scope @ ~/.julia/packages/BiobakeryUtils/ypFMk/test/runtests.jl:2 [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [9] top-level scope @ none:6 [10] eval(m::Module, e::Any) @ Core ./boot.jl:489 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [12] _start() @ Base ./client.jl:577 nested task error: TaskFailedException nested task error: UndefVarError: `push_testset` not defined in `ReTest.Testset` Suggestion: this global was defined as `Test.push_testset` but not assigned a value. Stacktrace: [1] top-level scope @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:517 [2] macro expansion @ ~/.julia/packages/BiobakeryUtils/ypFMk/test/BiobakeryUtilsTests.jl:15 [inlined] [3] macro expansion @ ~/.julia/packages/ReTest/3Ikse/src/testset.jl:517 [inlined] [4] eval(m::Module, e::Any) @ Core ./boot.jl:489 [5] (::ReTest.var"#110#111"{ReTest.Testset.Format})(mod::Module, ts::ReTest.TestsetExpr, pat::ReTest.And, chan::@NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing}) @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1154 [6] #local_remotecall_thunk##0 @ /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:425 [inlined] [7] run_work_thunk(thunk::Distributed.var"#local_remotecall_thunk##0#local_remotecall_thunk##1"{ReTest.var"#110#111"{ReTest.Testset.Format}, Tuple{Module, ReTest.TestsetExpr, ReTest.And, @NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing}}, @Kwargs{}}, print_error::Bool) @ Distributed /opt/julia/share/julia/stdlib/v1.13/Distributed/src/process_messages.jl:70 [8] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{}) @ Distributed /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:450 [9] remotecall_fetch @ /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:449 [inlined] [10] remotecall_fetch @ /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:492 [inlined] [11] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})() @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151 Stacktrace: [1] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{}) @ Distributed /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:451 [2] remotecall_fetch @ /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:449 [inlined] [3] remotecall_fetch @ /opt/julia/share/julia/stdlib/v1.13/Distributed/src/remotecall.jl:492 [inlined] [4] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})() @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151 Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:601 [2] macro expansion @ ./task.jl:634 [inlined] [3] (::ReTest.var"#96#97"{Bool, ReTest.Testset.Format, Bool, Base.RefValue{Int64}, Bool, ReTest.var"#take_latest!#91", Nothing, ReentrantLock, Bool, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Base.RefValue{Exception}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})() @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1104 in expression starting at /home/pkgeval/.julia/packages/BiobakeryUtils/ypFMk/test/runtests.jl:2 Testing failed after 425.98s ERROR: LoadError: Package BiobakeryUtils errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2674 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2523 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:548 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:525 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 527.67s: package tests unexpectedly errored