Package evaluation of StructuralIdentifiability on Julia 1.13.0-DEV.1277 (fa66b63fc3*) started at 2025-10-07T23:16:28.383 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.44s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [220ca800] + StructuralIdentifiability v0.5.16 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [c3fe647b] + AbstractAlgebra v0.46.5 [a9b6321e] + Atomix v1.1.2 [861a8166] + Combinatorics v1.0.3 [864edb3b] + DataStructures v0.19.1 [e2ba6199] + ExprTools v0.1.10 [0b43b601] + Groebner v0.9.5 [18e54dd8] + IntegerMathUtils v0.1.3 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 ⌅ [2edaba10] + Nemo v0.51.1 [bac558e1] + OrderedCollections v1.8.1 [3e851597] + ParamPunPam v0.5.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [fb686558] + RandomExtensions v0.4.4 [220ca800] + StructuralIdentifiability v0.5.16 [a759f4b9] + TimerOutputs v0.5.29 [013be700] + UnsafeAtomics v0.3.0 [e134572f] + FLINT_jll v301.300.102+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [3a97d323] + MPFR_jll v4.2.2+0 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.9s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5201.2 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 392.94s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_3h1e6i/Project.toml` ⌅ [c3fe647b] AbstractAlgebra v0.46.5 [4c88cf16] Aqua v0.8.14 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [864edb3b] DataStructures v0.19.1 [0b43b601] Groebner v0.9.5 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.51.1 [3e851597] ParamPunPam v0.5.3 [aea7be01] PrecompileTools v1.3.3 [27ebfcd6] Primes v0.5.7 [276daf66] SpecialFunctions v2.6.1 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_3h1e6i/Manifest.toml` ⌅ [c3fe647b] AbstractAlgebra v0.46.5 [4c88cf16] Aqua v0.8.14 [a9b6321e] Atomix v1.1.2 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.19.1 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [0b43b601] Groebner v0.9.5 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.3 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.51.1 [bac558e1] OrderedCollections v1.8.1 [3e851597] ParamPunPam v0.5.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [fb686558] RandomExtensions v0.4.4 [431bcebd] SciMLPublic v1.0.0 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.0 [220ca800] StructuralIdentifiability v0.5.16 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 [e134572f] FLINT_jll v301.300.102+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Resolving package versions... Updating `/tmp/jl_3h1e6i/Project.toml` ⌅ [c3fe647b] ↓ AbstractAlgebra v0.46.5 ⇒ v0.44.13 [loaded: v0.46.5] ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [961ee093] + ModelingToolkit v10.24.0 ⌅ [2edaba10] ↓ Nemo v0.51.1 ⇒ v0.49.5 [loaded: v0.51.1] Updating `/tmp/jl_3h1e6i/Manifest.toml` [47edcb42] + ADTypes v1.18.0 ⌅ [c3fe647b] ↓ AbstractAlgebra v0.46.5 ⇒ v0.44.13 [loaded: v0.46.5] [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.12.0 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.2 [70df07ce] + BracketingNonlinearSolve v1.5.0 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [loaded: v0.19.1] [2b5f629d] + DiffEqBase v6.190.2 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.8 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.122 [5b8099bc] + DomainSets v0.7.16 ⌃ [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.10.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.14 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.14.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff v2.28.1 [1fa38f19] + Format v1.3.7 ⌃ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [3263718b] + ImplicitDiscreteSolve v1.2.0 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.6 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.19.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [d8e11817] + MLStyle v0.4.17 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v10.24.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.6 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 ⌅ [2edaba10] ↓ Nemo v0.51.1 ⇒ v0.49.5 [loaded: v0.51.1] [be0214bd] + NonlinearSolveBase v2.0.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bbf590c4] + OrdinaryDiffEqCore v1.34.0 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [9dfe8606] + SCCNonlinearSolve v1.6.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.120.0 [19f34311] + SciMLJacobianOperators v0.1.11 [c0aeaf25] + SciMLOperators v1.7.2 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.9.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.45 ⌃ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.31.0 [0c5d862f] + Symbolics v6.55.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [410a4b4d] + Tricks v0.1.12 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.0 [a7c27f48] + Unityper v0.1.6 ⌅ [e134572f] ↓ FLINT_jll v301.300.102+0 ⇒ v300.200.201+0 [loaded: v301.300.102+0] [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [f50d1b31] + Rmath_jll v0.5.1+0 [9fa8497b] + Future v1.11.0 [a63ad114] + Mmap v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Resolving package versions... Updating `/tmp/jl_3h1e6i/Project.toml` [0c5d862f] + Symbolics v6.55.0 Manifest No packages added to or removed from `/tmp/jl_3h1e6i/Manifest.toml` WARNING: Method definition rrule(typeof(ArrayInterface.restructure), Any, Any) in module ArrayInterfaceChainRulesCoreExt at /home/pkgeval/.julia/packages/ArrayInterface/HGmwH/ext/ArrayInterfaceChainRulesCoreExt.jl:7 overwritten in module ArrayInterfaceChainRulesCoreExt on the same line (check for duplicate calls to `include`). ┌ Warning: Replacing module `ArrayInterfaceChainRulesCoreExt` └ @ Base loading.jl:2589 WARNING: Method definition contiguous_axis(Type{var"#s1"} where var"#s1"<:(StaticArraysCore.StaticArray{S, T, N} where N where T where S<:Tuple)) in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:31 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition stride_rank(Type{T}) where {N, T<:(StaticArraysCore.StaticArray{var"#s1", var"#s2", N} where var"#s2" where var"#s1")} in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:33 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition dense_dims(Type{var"#s2"} where var"#s2"<:StaticArraysCore.StaticArray{S, T, N}) where {S, T, N} in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:36 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition defines_strides(Type{var"#s2"} where var"#s2"<:(StaticArraysCore.MArray{S, T, N, L} where L where N where T where S<:Tuple)) in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:40 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition defines_strides(Type{var"#s2"} where var"#s2"<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T where S<:Tuple)) in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:39 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition axes_types(Type{var"#s3"} where var"#s3"<:(StaticArraysCore.StaticArray{S, T, N} where N where T)) where {S} in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:42 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition known_length(Type{A}) where {A<:(StaticArraysCore.StaticArray{S, T, N} where N where T where S<:Tuple)} in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:24 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition known_length(Type{StaticArrays.SOneTo{N}}) where {N} in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:22 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition known_length(Type{StaticArrays.Length{L}}) where {L} in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:23 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition parent_type(Type{var"#s3"} where var"#s3"<:StaticArraysCore.SizedArray{S, T, M, N, A}) where {S, T, M, N, A} in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:64 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition static_length(StaticArraysCore.StaticArray{S, T, N} where N where T where S<:Tuple) in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:28 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition static_size(StaticArraysCore.StaticArray{S, T, N} where N where T) where {S} in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:45 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition known_last(Type{StaticArrays.SOneTo{N}}) where {N} in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:21 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition static_strides(StaticArraysCore.StaticArray{S, T, N} where N where T) where {S} in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:53 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition static_strides(StaticArraysCore.SizedArray{S, T, M, N, A}) where {S, T, M, N, A<:(Base.SubArray{T, N, P, I, L} where L where I where P where N where T)} in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:63 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition device(Type{var"#s1"} where var"#s1"<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T where S<:Tuple)) in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:30 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition device(Type{var"#s1"} where var"#s1"<:(StaticArraysCore.MArray{S, T, N, L} where L where N where T where S<:Tuple)) in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:29 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition known_first(Type{var"#s1"} where var"#s1"<:(StaticArrays.SOneTo{n} where n)) in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:20 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition contiguous_batch_size(Type{var"#s1"} where var"#s1"<:(StaticArraysCore.StaticArray{S, T, N} where N where T where S<:Tuple)) in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:32 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Static.OptionallyStaticUnitRange{F, L} where L<:Union{Int64, Static.StaticInt{N} where N} where F<:Union{Int64, Static.StaticInt{N} where N}})(StaticArrays.SOneTo{N}) where {N} in module StaticArrayInterfaceStaticArraysExt at /home/pkgeval/.julia/packages/StaticArrayInterface/lkDPR/ext/StaticArrayInterfaceStaticArraysExt.jl:17 overwritten in module StaticArrayInterfaceStaticArraysExt on the same line (check for duplicate calls to `include`). ┌ Warning: Replacing module `StaticArrayInterfaceStaticArraysExt` └ @ Base loading.jl:2589 [ Info: Testing started [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 172 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm12SelectionDAG8LegalizeEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm16SelectionDAGISel17CodeGenAndEmitDAGEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm16SelectionDAGISel20SelectAllBasicBlocksERKNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm16SelectionDAGISel20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm22SelectionDAGISelLegacy20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1628 addModule at /source/src/jitlayers.cpp:2119 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3648 _jl_invoke at /source/src/gf.c:4108 [inlined] ijl_apply_generic at /source/src/gf.c:4313 power_series_solution at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/ODE.jl:204 iterate at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/elimination.jl:224 iterate at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/elimination.jl:207 [inlined] choose at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/elimination.jl:281 unknown function (ip: 0x733ca90100c6) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 eliminate_var at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/elimination.jl:308 find_ioprojections at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/io_equation.jl:109 #_find_ioequations#221 at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/io_equation.jl:359 _find_ioequations at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/io_equation.jl:359 [inlined] #219 at ./none (unknown line) [inlined] with_logstate at ./logging/logging.jl:540 with_logger at ./logging/logging.jl:651 [inlined] #find_ioequations#217 at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/io_equation.jl:347 find_ioequations at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/src/io_equation.jl:347 unknown function (ip: 0x733ca8fd4d42) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2954 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3014 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x733cac88d232) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:162 [inlined] macro expansion at /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:160 [inlined] macro expansion at ./timing.jl:689 [inlined] top-level scope at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/runtests.jl:159 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_invoke at /source/src/gf.c:4123 jl_toplevel_eval_flex at /source/src/toplevel.c:731 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2954 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3014 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_68568.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_39417.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x733d03ed5249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) #= 483.7 ms =# precompile(Tuple{Type{Base.Dict{K, V} where V where K}, Base.Generator{Base.Dict{Nemo.QQMPolyRingElem, Array{Int64, 1}}, StructuralIdentifiability.var"#power_series_solution##16#power_series_solution##17"{Nemo.QQField}}}) #= 23.3 ms =# precompile(Tuple{Type{Base.Generator{I, F} where F where I}, StructuralIdentifiability.var"#power_series_solution##2#power_series_solution##3"{Nemo.QQMPolyRing}, Base.Dict{Nemo.QQMPolyRingElem, Nemo.QQFieldElem}}) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1217 wait_forever at ./task.jl:1139 jfptr_wait_forever_55536.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: New variable c, treating as a scalar parameter └ @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/0tPYp/src/pb_representation.jl:94 [ Info: Summary of the model: ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000079e601bee3b0 Total snapshots: 406. Utilization: 0% ╎406 @Base/task.jl:1139 wait_forever() 405╎ 406 @Base/task.jl:1217 wait() [ Info: State variables: x1, x2, x3 [172] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/0tPYp/test/common_ring.jl:1 unknown function (ip: 0x733d03ffcd2f) at /lib/x86_64-linux-gnu/libc.so.6 jl_dylib_DI_for_fptr at /source/src/debuginfo.cpp:1110 jl_getDylibFunctionInfo at /source/src/debuginfo.cpp:1199 [inlined] jl_getFunctionInfo_impl at /source/src/debuginfo.cpp:1295 ijl_lookup_code_address at /source/src/stackwalk.c:616 lookup at ./stacktraces.jl:110 _lookup_corrected at /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:489 #getdict!##0 at /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:478 unknown function (ip: 0x733ca8e64227) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 184779177 (Pool: 184776345; Big: 2832); GC: 77 PkgEval terminated after 2728.14s: test duration exceeded the time limit