Package evaluation of Stheno on Julia 1.13.0-DEV.1277 (fa66b63fc3*) started at 2025-10-08T03:27:09.240 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.29s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.0 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.14.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.37s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5071.8 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 205.72s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_CpMAel/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_CpMAel/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.12.0 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.14.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.2.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.6 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.3 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#140` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 18m47.9s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1138s / 99.1% 28.1GiB / 99.4% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 717s 63.7% 717s 19.5GiB 69.9% 19.5GiB addition 1 398s 35.3% 398s 11.3GiB 40.6% 11.3GiB Standardised Tests (correlated sum) 1 226s 20.0% 226s 6.20GiB 22.2% 6.20GiB adj_ad 9 25.4s 2.3% 2.83s 0.97GiB 3.5% 110MiB adj_fd 9 8.60s 0.8% 956ms 298MiB 1.0% 33.1MiB Standardised Tests (independent sum) 1 126s 11.2% 126s 4.86GiB 17.4% 4.86GiB adj_ad 9 23.8s 2.1% 2.64s 1.18GiB 4.2% 134MiB adj_fd 9 10.0s 0.9% 1.11s 281MiB 1.0% 31.2MiB Correlated GPs 1 42.4s 3.8% 42.4s 260MiB 0.9% 260MiB Consistency Tests 1 17.3s 1.5% 17.3s 112MiB 0.4% 112MiB Verify mean / kernel numerically 1 2.75s 0.2% 2.75s 37.4MiB 0.1% 37.4MiB Consistency Tests 1 1.54s 0.1% 1.54s 11.7MiB 0.0% 11.7MiB product 1 151s 13.4% 151s 3.76GiB 13.4% 3.76GiB multiply by function 1 87.5s 7.8% 87.5s 2.00GiB 7.2% 2.00GiB Diff Tests 1 48.7s 4.3% 48.7s 1.52GiB 5.4% 1.52GiB adj_ad 9 19.1s 1.7% 2.12s 835MiB 2.9% 92.8MiB adj_fd 9 5.49s 0.5% 610ms 108MiB 0.4% 12.0MiB Consistency Tests 1 5.99s 0.5% 5.99s 96.0MiB 0.3% 96.0MiB multiply by constant 1 63.6s 5.6% 63.6s 1.76GiB 6.3% 1.76GiB Diff Tests 1 47.5s 4.2% 47.5s 1.71GiB 6.1% 1.71GiB adj_ad 9 15.8s 1.4% 1.75s 765MiB 2.7% 85.0MiB adj_fd 9 10.5s 0.9% 1.16s 275MiB 1.0% 30.5MiB Consistency Tests 1 3.90s 0.3% 3.90s 16.5MiB 0.1% 16.5MiB GP mul errors 1 11.9ms 0.0% 11.9ms 37.2KiB 0.0% 37.2KiB compose 1 80.2s 7.1% 80.2s 2.29GiB 8.2% 2.29GiB general 1 48.8s 4.3% 48.8s 1.50GiB 5.4% 1.50GiB Diff Tests 1 43.9s 3.9% 43.9s 1.45GiB 5.2% 1.45GiB adj_ad 9 13.8s 1.2% 1.53s 704MiB 2.5% 78.2MiB adj_fd 9 5.41s 0.5% 601ms 110MiB 0.4% 12.2MiB Consistency Tests 1 3.65s 0.3% 3.65s 32.3MiB 0.1% 32.3MiB Stretch 1 25.7s 2.3% 25.7s 717MiB 2.5% 717MiB scalar stretch 1 24.9s 2.2% 24.9s 704MiB 2.5% 704MiB scalar input 1 24.1s 2.1% 24.1s 701MiB 2.4% 701MiB adj_fd 9 8.56s 0.8% 951ms 264MiB 0.9% 29.3MiB adj_ad 9 3.28s 0.3% 364ms 136MiB 0.5% 15.1MiB vector input 1 830ms 0.1% 830ms 3.07MiB 0.0% 3.07MiB Vector stretch 1 639ms 0.1% 639ms 9.36MiB 0.0% 9.36MiB Matrix stretch 1 134ms 0.0% 134ms 2.82MiB 0.0% 2.82MiB Shift 1 3.06s 0.3% 3.06s 37.4MiB 0.1% 37.4MiB Shift{Vector{Float64}} 1 1.66s 0.1% 1.66s 13.5MiB 0.0% 13.5MiB Shift{Float64} 1 1.40s 0.1% 1.40s 23.9MiB 0.1% 23.9MiB Select 1 1.57s 0.1% 1.57s 29.8MiB 0.1% 29.8MiB evaluation 1 716ms 0.1% 716ms 19.2MiB 0.1% 19.2MiB idx isa Vector 1 505ms 0.0% 505ms 7.32MiB 0.0% 7.32MiB idx isa Integer 1 353ms 0.0% 353ms 3.19MiB 0.0% 3.19MiB Periodic 1 1.10s 0.1% 1.10s 31.2MiB 0.1% 31.2MiB cross 1 29.4s 2.6% 29.4s 1.38GiB 4.9% 1.38GiB block arrays 1 16.3s 1.4% 16.3s 782MiB 2.7% 782MiB Stheno._collect ∘ _mortar 1 13.1s 1.2% 13.1s 658MiB 2.3% 658MiB BlockMatrix 1 6.82s 0.6% 6.82s 375MiB 1.3% 375MiB adj_fd 1 898ms 0.1% 898ms 130MiB 0.5% 130MiB adj_ad 1 49.1ms 0.0% 49.1ms 2.19MiB 0.0% 2.19MiB BlockVector 1 6.31s 0.6% 6.31s 283MiB 1.0% 283MiB adj_fd 1 782ms 0.1% 782ms 11.7MiB 0.0% 11.7MiB adj_ad 1 213ms 0.0% 213ms 15.0MiB 0.1% 15.0MiB fdm stuff 1 3.17s 0.3% 3.17s 125MiB 0.4% 125MiB Correctness tests 1 7.77s 0.7% 7.77s 408MiB 1.4% 408MiB Standardised Tests 1 5.34s 0.5% 5.34s 220MiB 0.8% 220MiB gp 1 188s 16.7% 188s 4.30GiB 15.4% 4.30GiB sparse gp 1 19.1s 1.7% 19.1s 371MiB 1.3% 371MiB SparseFiniteGP inference 1 13.7s 1.2% 13.7s 254MiB 0.9% 254MiB SparseFiniteGP methods 1 4.90s 0.4% 4.90s 113MiB 0.4% 113MiB SparseFiniteGP Constructors 1 382ms 0.0% 382ms 3.87MiB 0.0% 3.87MiB adj_ad 2 18.8s 1.7% 9.40s 795MiB 2.8% 397MiB gp 1 16.7s 1.5% 16.7s 347MiB 1.2% 347MiB GP 1 16.4s 1.5% 16.4s 345MiB 1.2% 345MiB independent GPs 1 288ms 0.0% 288ms 2.46MiB 0.0% 2.46MiB wrapped AbstractGP 1 12.0ms 0.0% 12.0ms 271KiB 0.0% 271KiB adj_fd 2 2.70s 0.2% 1.35s 40.3MiB 0.1% 20.2MiB derived_gp 1 169μs 0.0% 169μs 1.92KiB 0.0% 1.92KiB gaussian_process_probabilistic_programme 1 138s 12.3% 138s 2.14GiB 7.7% 2.14GiB Zygote 1 27.6s 2.5% 27.6s 0.94GiB 3.3% 0.94GiB nested gppp 1 14.7s 1.3% 14.7s 71.5MiB 0.2% 71.5MiB External Consistency 1 14.0s 1.2% 14.0s 88.8MiB 0.3% 88.8MiB split 1 618ms 0.1% 618ms 10.9MiB 0.0% 10.9MiB gppp macro 1 54.2ms 0.0% 54.2ms 539KiB 0.0% 539KiB doctests 1 75.7s 6.7% 75.7s 1.73GiB 6.2% 1.73GiB BlockData 1 7.48s 0.7% 7.48s 228MiB 0.8% 228MiB vcat(::GPPPInput...) 1 1.76s 0.2% 1.76s 78.6MiB 0.3% 78.6MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1157.89s PkgEval succeeded after 1803.33s