Package evaluation of CellularPotts on Julia 1.13.0-DEV.1265 (cd62cf9a08*) started at 2025-10-08T14:35:01.659 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.96s ################################################################################ # Installation # Installing CellularPotts... Resolving package versions... Installed Qt6Base_jll ────────────────── v6.8.2+1 Installed Libuuid_jll ────────────────── v2.41.2+0 Installed Bzip2_jll ──────────────────── v1.0.9+0 Installed Libtiff_jll ────────────────── v4.7.2+0 Installed HarfBuzz_jll ───────────────── v8.5.1+0 Installed Cairo_jll ──────────────────── v1.18.5+0 Installed libass_jll ─────────────────── v0.17.4+0 Installed libaom_jll ─────────────────── v3.12.1+0 Installed Xorg_libXinerama_jll ───────── v1.1.6+0 Installed PlotThemes ─────────────────── v3.3.0 Installed OrderedCollections ─────────── v1.8.1 Installed libinput_jll ───────────────── v1.28.1+0 Installed Graphite2_jll ──────────────── v1.3.15+0 Installed Fontconfig_jll ─────────────── v2.17.1+0 Installed fzf_jll ────────────────────── v0.61.1+0 Installed NaNMath ────────────────────── v1.1.3 Installed Opus_jll ───────────────────── v1.5.2+0 Installed Xorg_libxcb_jll ────────────── v1.17.1+0 Installed Ogg_jll ────────────────────── v1.3.6+0 Installed Tables ─────────────────────── v1.12.1 Installed Unzip ──────────────────────── v0.2.0 Installed LZO_jll ────────────────────── v2.10.3+0 Installed Reexport ───────────────────── v1.2.2 Installed Preferences ────────────────── v1.5.0 Installed Xorg_xcb_util_wm_jll ───────── v0.4.2+0 Installed LLVMOpenMP_jll ─────────────── v18.1.8+0 Installed LERC_jll ───────────────────── v4.0.1+0 Installed Missings ───────────────────── v1.2.0 Installed FFMPEG ─────────────────────── v0.4.4 Installed RegistryInstances ──────────── v0.1.0 Installed TableTraits ────────────────── v1.0.1 Installed SortingAlgorithms ──────────── v1.2.2 Installed Xorg_libICE_jll ────────────── v1.1.2+0 Installed Crayons ────────────────────── v4.1.1 Installed LaTeXStrings ───────────────── v1.4.0 Installed eudev_jll ──────────────────── v3.2.14+0 Installed Grisu ──────────────────────── v1.0.2 Installed EpollShim_jll ──────────────── v0.0.20230411+1 Installed Format ─────────────────────── v1.3.7 Installed Inflate ────────────────────── v0.1.5 Installed OpenSSH_jll ────────────────── v10.0.2+0 Installed MacroTools ─────────────────── v0.5.16 Installed URIs ───────────────────────── v1.6.1 Installed AbstractTrees ──────────────── v0.4.5 Installed ArnoldiMethod ──────────────── v0.4.0 Installed DataStructures ─────────────── v0.19.1 Installed DelimitedFiles ─────────────── v1.9.1 Installed StatsBase ──────────────────── v0.34.6 Installed Xorg_xcb_util_jll ──────────── v0.4.1+0 Installed x264_jll ───────────────────── v10164.0.1+0 Installed UnicodeFun ─────────────────── v0.4.1 Installed Xorg_libXau_jll ────────────── v1.0.13+0 Installed Xorg_libXfixes_jll ─────────── v6.0.2+0 Installed mtdev_jll ──────────────────── v1.1.7+0 Installed Qt6ShaderTools_jll ─────────── v6.8.2+1 Installed CodecZlib ──────────────────── v0.7.8 Installed DataValueInterfaces ────────── v1.0.0 Installed Libffi_jll ─────────────────── v3.4.7+0 Installed Expat_jll ──────────────────── v2.7.1+0 Installed CEnum ──────────────────────── v0.5.0 Installed Pixman_jll ─────────────────── v0.44.2+0 Installed LoggingExtras ──────────────── v1.2.0 Installed StructUtils ────────────────── v2.5.1 Installed libpng_jll ─────────────────── v1.6.50+0 Installed libdecor_jll ───────────────── v0.2.2+0 Installed Xorg_libXcursor_jll ────────── v1.2.4+0 Installed IrrationalConstants ────────── v0.2.4 Installed ColorVectorSpace ───────────── v0.11.0 Installed Contour ────────────────────── v0.6.3 Installed HTTP ───────────────────────── v1.10.19 Installed SimpleTraits ───────────────── v0.9.5 Installed libfdk_aac_jll ─────────────── v2.0.4+0 Installed BitFlags ───────────────────── v0.1.9 Installed StableRNGs ─────────────────── v1.0.3 Installed Xorg_xcb_util_keysyms_jll ──── v0.4.1+0 Installed IOCapture ──────────────────── v0.2.5 Installed FFMPEG_jll ─────────────────── v7.1.1+0 Installed Qt6Declarative_jll ─────────── v6.8.2+1 Installed Scratch ────────────────────── v1.3.0 Installed SimpleBufferStream ─────────── v1.2.0 Installed DocStringExtensions ────────── v0.9.5 Installed Ghostscript_jll ────────────── v9.55.1+0 Installed RelocatableFolders ─────────── v1.0.1 Installed JLFzf ──────────────────────── v0.1.11 Installed AliasTables ────────────────── v1.1.3 Installed Plots ──────────────────────── v1.41.1 Installed ConcurrentUtilities ────────── v2.5.0 Installed IteratorInterfaceExtensions ── v1.0.0 Installed RecipesBase ────────────────── v1.3.4 Installed DataAPI ────────────────────── v1.16.0 Installed Git_LFS_jll ────────────────── v3.7.0+0 Installed Xorg_libXi_jll ─────────────── v1.8.3+0 Installed libevdev_jll ───────────────── v1.13.4+0 Installed Wayland_jll ────────────────── v1.24.0+0 Installed Measures ───────────────────── v0.3.2 Installed Colors ─────────────────────── v0.13.1 Installed ColorSchemes ───────────────── v3.31.0 Installed StaticArraysCore ───────────── v1.4.3 Installed Xorg_libxkbfile_jll ────────── v1.1.3+0 Installed StaticArrays ───────────────── v1.9.15 Installed Libglvnd_jll ───────────────── v1.7.1+1 Installed Documenter ─────────────────── v1.14.1 Installed Latexify ───────────────────── v0.16.10 Installed Xorg_xkbcomp_jll ───────────── v1.4.7+0 Installed ColorTypes ─────────────────── v0.12.1 Installed Glib_jll ───────────────────── v2.86.0+0 Installed StringManipulation ─────────── v0.4.1 Installed Requires ───────────────────── v1.3.1 Installed LogExpFunctions ────────────── v0.3.29 Installed Vulkan_Loader_jll ──────────── v1.3.243+0 Installed Xorg_xcb_util_cursor_jll ───── v0.1.6+0 Installed Git_jll ────────────────────── v2.51.1+0 Installed Xorg_xcb_util_renderutil_jll ─ v0.3.10+0 Installed Parsers ────────────────────── v2.8.3 Installed JSON ───────────────────────── v1.0.1 Installed PrettyTables ───────────────── v2.4.0 Installed Xorg_libXdmcp_jll ──────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ──── v2.44.0+0 Installed Xorg_libSM_jll ─────────────── v1.2.6+0 Installed XZ_jll ─────────────────────── v5.8.1+0 Installed JLLWrappers ────────────────── v1.7.1 Installed x265_jll ───────────────────── v4.1.0+0 Installed Pango_jll ──────────────────── v1.56.4+0 Installed Xorg_xtrans_jll ────────────── v1.6.0+0 Installed RecipesPipeline ────────────── v0.6.12 Installed GR_jll ─────────────────────── v0.73.17+0 Installed Dbus_jll ───────────────────── v1.16.2+0 Installed JpegTurbo_jll ──────────────── v3.1.3+0 Installed Graphs ─────────────────────── v1.13.1 Installed Libmount_jll ───────────────── v2.41.2+0 Installed Xorg_libX11_jll ────────────── v1.8.12+0 Installed ExceptionUnwrapping ────────── v0.1.11 Installed PlotUtils ──────────────────── v1.4.3 Installed TranscodingStreams ─────────── v0.11.3 Installed TensorCore ─────────────────── v0.1.1 Installed Literate ───────────────────── v2.20.1 Installed Statistics ─────────────────── v1.11.1 Installed StatsAPI ───────────────────── v1.7.1 Installed OffsetArrays ───────────────── v1.17.0 Installed PrecompileTools ────────────── v1.3.3 Installed MbedTLS ────────────────────── v1.1.9 Installed OpenSSL ────────────────────── v1.5.0 Installed MarkdownAST ────────────────── v0.1.2 Installed Xorg_xcb_util_image_jll ────── v0.4.1+0 Installed xkbcommon_jll ──────────────── v1.9.2+0 Installed GettextRuntime_jll ─────────── v0.22.4+0 Installed FriBidi_jll ────────────────── v1.0.17+0 Installed Metis ──────────────────────── v1.5.0 Installed GLFW_jll ───────────────────── v3.4.0+2 Installed LAME_jll ───────────────────── v3.100.3+0 Installed LazilyInitializedFields ────── v1.3.0 Installed libvorbis_jll ──────────────── v1.3.8+0 Installed Xorg_libXrender_jll ────────── v0.9.12+0 Installed Git ────────────────────────── v1.5.0 Installed PtrArrays ──────────────────── v1.3.0 Installed FixedPointNumbers ──────────── v0.8.5 Installed Showoff ────────────────────── v1.0.3 Installed Libiconv_jll ───────────────── v1.18.0+0 Installed FreeType2_jll ──────────────── v2.13.4+0 Installed Xorg_libXrandr_jll ─────────── v1.5.5+0 Installed METIS_jll ──────────────────── v5.1.3+0 Installed MbedTLS_jll ────────────────── v2.28.6+2 Installed Xorg_libXext_jll ───────────── v1.3.7+0 Installed Qt6Wayland_jll ─────────────── v6.8.2+1 Installed ANSIColoredPrinters ────────── v0.0.1 Installed GR ─────────────────────────── v0.73.17 Installed CellularPotts ──────────────── v0.3.6 Installing 79 artifacts Installed artifact Xorg_xcb_util_renderutil 32.1 KiB Installed artifact mtdev 79.6 KiB Installed artifact xkbcommon 263.7 KiB Installed artifact LERC 272.9 KiB Installed artifact Expat 274.7 KiB Installed artifact Dbus 489.8 KiB Installed artifact libdecor 44.1 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Pixman 372.2 KiB Installed artifact fzf 3.3 MiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact XZ 1.5 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact Xorg_xcb_util_keysyms 17.8 KiB Installed artifact Qt6ShaderTools 2.1 MiB Installed artifact Xorg_libICE 384.9 KiB Installed artifact libfdk_aac 2.8 MiB Installed artifact GLFW 180.1 KiB Installed artifact LZO 208.9 KiB Installed artifact LAME 292.5 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact METIS 1.1 MiB Installed artifact Xorg_xcb_util_cursor 27.6 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Libuuid 3.7 MiB Installed artifact Xorg_libSM 164.1 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact x265 1.4 MiB Installed artifact eudev 3.9 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact libpng 328.4 KiB Installed artifact libinput 1.0 MiB Installed artifact MbedTLS 2.1 MiB Installed artifact libaom 6.4 MiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Opus 925.5 KiB Installed artifact Libtiff 2.3 MiB Installed artifact libass 427.8 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Xorg_xcb_util_image 54.3 KiB Installed artifact Xorg_xcb_util_wm 147.9 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Vulkan_Loader 177.3 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact x264 2.1 MiB Installed artifact Fontconfig 984.8 KiB Installed artifact OpenSSH 4.2 MiB Installed artifact Wayland 390.6 KiB Installed artifact Cairo 2.2 MiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Pango 1.1 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Git_LFS 9.6 MiB Installed artifact FFMPEG 11.4 MiB Installed artifact Ogg 250.3 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Qt6Base 20.6 MiB Installed artifact libevdev 117.1 KiB Installed artifact libvorbis 271.0 KiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Libffi 44.2 KiB Installed artifact Xorg_xcb_util 39.5 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Ghostscript 31.4 MiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Glib 7.7 MiB Installed artifact Graphite2 120.2 KiB Installed artifact GR 16.2 MiB Installed artifact FreeType2 1.5 MiB Installed artifact Libmount 6.5 MiB Installed artifact Qt6Wayland 2.2 MiB Installed artifact Qt6Declarative 21.6 MiB Installed artifact Git 48.9 MiB Updating `~/.julia/environments/v1.13/Project.toml` [11b7dee7] + CellularPotts v0.3.6 Updating `~/.julia/environments/v1.13/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [11b7dee7] + CellularPotts v0.3.6 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.14.1 [460bff9d] + ExceptionUnwrapping v0.1.11 [c87230d0] + FFMPEG v0.4.4 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [28b8d3ca] + GR v0.73.17 [d7ba0133] + Git v1.5.0 [86223c79] + Graphs v1.13.1 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.19 [b5f81e59] + IOCapture v0.2.5 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.0.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [0e77f7df] + LazilyInitializedFields v1.3.0 [98b081ad] + Literate v2.20.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [d0879d2d] + MarkdownAST v0.1.2 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.2 [2679e427] + Metis v1.5.0 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.3 [91a5bcdd] + Plots v1.41.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [189a3867] + Reexport v1.2.2 [2792f1a3] + RegistryInstances v0.1.0 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.3.0 [992d4aef] + Showoff v1.0.3 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [860ef19b] + StableRNGs v1.0.3 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [892a3eda] + StringManipulation v0.4.1 [ec057cc2] + StructUtils v2.5.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [1cfade01] + UnicodeFun v0.4.1 [41fe7b60] + Unzip v0.2.0 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [ee1fde0b] + Dbus_jll v1.16.2+0 [2702e6a9] + EpollShim_jll v0.0.20230411+1 [2e619515] + Expat_jll v2.7.1+0 [b22a6f82] + FFMPEG_jll v7.1.1+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [0656b61e] + GLFW_jll v3.4.0+2 [d2c73de3] + GR_jll v0.73.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [61579ee1] + Ghostscript_jll v9.55.1+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.51.1+0 [7746bdde] + Glib_jll v2.86.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + 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To see why use `status --outdated -m` Installation completed after 35.43s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4740.2 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... Precompilation completed after 1637.39s ################################################################################ # Testing # Testing CellularPotts Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_SmFAUl/Project.toml` [6e4b80f9] + BenchmarkTools v1.6.0 [11b7dee7] + CellularPotts v0.3.6 [0c46a032] + DifferentialEquations v7.16.1 Updating `/tmp/jl_SmFAUl/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [a95523ee] + AlmostBlockDiagonals v0.1.10 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.12.0 [aae01518] + BandedMatrices v1.9.5 [6e4b80f9] + BenchmarkTools v1.6.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] + BoundaryValueDiffEq v5.18.0 [7227322d] + BoundaryValueDiffEqAscher v1.8.0 [56b672f2] + BoundaryValueDiffEqCore v1.11.1 [85d9eb09] + BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] + BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] + BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] + BoundaryValueDiffEqShooting v1.9.0 [70df07ce] + BracketingNonlinearSolve v1.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [11b7dee7] + CellularPotts v0.3.6 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + 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v3.37.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.120.0 [19f34311] + SciMLJacobianOperators v0.1.11 [c0aeaf25] + SciMLOperators v1.7.2 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.9.0 [ce78b400] + SimpleUnPack v1.1.0 [9f842d2f] + SparseConnectivityTracer v1.1.0 [0a514795] + SparseMatrixColorings v0.4.21 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.0 [0d7ed370] + StaticArrayInterface v1.8.0 [4c63d2b9] + StatsFuns v1.5.0 [9672c7b4] + SteadyStateDiffEq v2.7.0 [789caeaf] + StochasticDiffEq v6.82.0 [7792a7ef] + StrideArraysCore v0.5.8 [ec057cc2] - StructUtils v2.5.1 ⌅ [c3572dad] + Sundials v4.28.0 ⌃ [2efcf032] + SymbolicIndexingInterface v0.3.44 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [9fa8497b] + Future v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [9abbd945] + Profile v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_SmFAUl/Project.toml` [6e4b80f9] BenchmarkTools v1.6.0 [11b7dee7] CellularPotts v0.3.6 [35d6a980] ColorSchemes v3.31.0 [5ae59095] Colors v0.13.1 [0c46a032] DifferentialEquations v7.16.1 [e30172f5] Documenter v1.14.1 [86223c79] Graphs v1.13.1 [98b081ad] Literate v2.20.1 [2679e427] Metis v1.5.0 [6fe1bfb0] OffsetArrays v1.17.0 [91a5bcdd] Plots v1.41.1 ⌅ [08abe8d2] PrettyTables v2.4.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.6 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_SmFAUl/Manifest.toml` [47edcb42] ADTypes v1.18.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [a95523ee] AlmostBlockDiagonals v0.1.10 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.20.0 [4c555306] ArrayLayouts v1.12.0 [aae01518] BandedMatrices v1.9.5 [6e4b80f9] BenchmarkTools v1.6.0 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] BoundaryValueDiffEq v5.18.0 [7227322d] BoundaryValueDiffEqAscher v1.8.0 [56b672f2] BoundaryValueDiffEqCore v1.11.1 [85d9eb09] BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] BoundaryValueDiffEqShooting v1.9.0 [70df07ce] BracketingNonlinearSolve v1.5.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [11b7dee7] CellularPotts v0.3.6 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [bcd4f6db] DelayDiffEq v5.61.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.190.2 [459566f4] DiffEqCallbacks v4.9.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [0c46a032] DifferentialEquations v7.16.1 [a0c0ee7d] DifferentiationInterface v0.7.8 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.14 [460bff9d] ExceptionUnwrapping v0.1.11 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [c87230d0] FFMPEG v0.4.4 [9d29842c] FastAlmostBandedMatrices v0.1.5 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.3 [1a297f60] FillArrays v1.14.0 [6a86dc24] FiniteDiff v2.28.1 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 ⌃ [f6369f11] ForwardDiff v0.10.39 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [28b8d3ca] GR v0.73.17 [c145ed77] GenericSchur v0.5.6 [d7ba0133] Git v1.5.0 [86223c79] Graphs v1.13.1 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.19 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [ccbc3e58] JumpProcesses v9.19.1 [ba0b0d4f] Krylov v0.10.2 [b964fa9f] 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PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Spaces or graphs, who's to say? | 3 3 4.6s Test Summary: | Pass Total Time Periodic grids | 8 8 0.1s Test Summary: | Pass Total Time Neighborhoods | 2 2 0.0s Test Summary: | Pass Total Time Lonely cells | 2 2 7.6s Test Summary: | Pass Total Time Testing positions keyword | 2 2 1.6s Test Summary: | Pass Total Time Adding Cell Properties | 6 6 1.1s Test Summary: | Pass Total Time Add/Delete Cells | 2 2 0.5s Test Summary: | Pass Total Time Penalty tests | 1 1 0.9s Test Summary: | Pass Total Time General Fragment Test | 1 1 4.0s Test Summary: | Pass Total Time Euler Characteristic | 2 2 2.4s Test Summary: | Pass Total Time Show me the CPM | 1 1 0.5s Test Summary: | Pass Total Time Hello World | 1 1 3.5s Test Summary: | Pass Total Time Going 3D | 1 1 4.9s Test Summary: | Pass Total Time Lets Get Moving | 1 1 5.3s Test Summary: | Pass Total Time OnPatrol | 1 1 13.9s Test Summary: | Pass Total Time Over Here | 1 1 2.8s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1990 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1217 wait_forever at ./task.jl:1139 jfptr_wait_forever_35554.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1217 wait_forever at ./task.jl:1139 jfptr_wait_forever_35554.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007e536eabafe0 Total snapshots: 91. Utilization: 0% ╎91 @Base/task.jl:1139 wait_forever() 90╎ 91 @Base/task.jl:1217 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1217 wait_forever at ./task.jl:1139 jfptr_wait_forever_35554.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 46655967 (Pool: 46654851; Big: 1116); GC: 71 [1990] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/DifferentialEquations/eQbP8/src/DifferentialEquations.jl:11 _ZN4llvm23MemoryDependenceResults27getNonLocalPointerDepFromBBEPNS_11InstructionERKNS_12PHITransAddrERKNS_14MemoryLocationEbPNS_10BasicBlockERNS_15SmallVectorImplINS_17NonLocalDepResultEEERNS_13SmallDenseMapISA_PNS_5ValueELj16ENS_12DenseMapInfoISA_vEENS_6detail12DenseMapPairISA_SH_EEEEbb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm23MemoryDependenceResults28getNonLocalPointerDependencyEPNS_11InstructionERNS_15SmallVectorImplINS_17NonLocalDepResultEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass19processNonLocalLoadEPNS_8LoadInstE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass18processInstructionEPNS_11InstructionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass12processBlockEPNS_10BasicBlockE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass17iterateOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass7runImplERNS_8FunctionERNS_15AssumptionCacheERNS_13DominatorTreeERKNS_17TargetLibraryInfoERNS_9AAResultsEPNS_23MemoryDependenceResultsERNS_8LoopInfoEPNS_25OptimizationRemarkEmitterEPNS_9MemorySSAE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm7GVNPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1513 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1474 [inlined] operator() at /source/src/jitlayers.cpp:1649 [inlined] addModule at /source/src/jitlayers.cpp:2106 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3648 _jl_invoke at /source/src/gf.c:4108 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] jl_f_invokelatest at /source/src/builtins.c:889 profile_printing_listener at ./Base.jl:337 #start_profile_listener##0 at ./Base.jl:355 jfptr_YY.start_profile_listenerYY.YY.0_16419.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 43599164 (Pool: 43597804; Big: 1360); GC: 35 PkgEval terminated after 2733.77s: test duration exceeded the time limit