Package evaluation of SBMLImporter on Julia 1.13.0-DEV.1265 (cd62cf9a08*) started at 2025-10-06T05:04:58.289 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.3s ################################################################################ # Installation # Installing SBMLImporter... Resolving package versions... Installed CommonWorldInvalidations ───────── v1.0.0 Installed Glob ───────────────────────────── v1.3.1 Installed MKL_jll ────────────────────────── v2025.2.0+0 Installed FastPower ──────────────────────── v1.1.3 Installed SIMDTypes ──────────────────────── v0.1.0 Installed SymbolicUtils ──────────────────── v3.32.0 Installed OrderedCollections ─────────────── v1.8.1 Installed Functors ───────────────────────── v0.5.2 Installed NonlinearSolveSpectralMethods ──── v1.4.0 Installed PreallocationTools ─────────────── v0.4.34 Installed EnzymeCore ─────────────────────── v0.8.14 Installed Optim ──────────────────────────── v1.13.2 Installed CpuId ──────────────────────────── v0.3.1 Installed StaticArrayInterface ───────────── v1.8.0 Installed NaNMath ────────────────────────── v1.1.3 Installed QuadGK ─────────────────────────── v2.11.2 Installed DispatchDoctor ─────────────────── v0.4.26 Installed DiffEqCallbacks ────────────────── v4.9.0 Installed DynamicQuantities ──────────────── v1.10.0 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed FastBroadcast ──────────────────── v0.3.5 Installed NonlinearSolveBase ─────────────── v1.16.1 Installed SBML_jll ───────────────────────── v5.20.1+0 Installed LinearSolve ────────────────────── v3.41.0 Installed SCCNonlinearSolve ──────────────── v1.6.0 Installed JumpProcesses ──────────────────── v9.19.1 Installed EnumX ──────────────────────────── v1.0.5 Installed JuliaFormatter ─────────────────── v2.1.6 Installed NLSolversBase ──────────────────── v7.10.0 Installed BracketingNonlinearSolve ───────── v1.4.0 Installed DiffEqBase ─────────────────────── v6.190.2 Installed Jieko ──────────────────────────── v0.2.1 Installed InverseFunctions ───────────────── v0.1.17 Installed NonlinearSolve ─────────────────── v4.10.0 Installed Reexport ───────────────────────── v1.2.2 Installed Missings ───────────────────────── v1.2.0 Installed Static ─────────────────────────── v1.3.0 Installed Preferences ────────────────────── v1.5.0 Installed MaybeInplace ───────────────────── v0.1.4 Installed SortingAlgorithms ──────────────── v1.2.2 Installed LaTeXStrings ───────────────────── v1.4.0 Installed RecursiveArrayTools ────────────── v3.37.1 Installed Catalyst ───────────────────────── v15.0.8 Installed SBMLImporter ───────────────────── v3.0.7 Installed Format ─────────────────────────── v1.3.7 Installed UnPack ─────────────────────────── v1.0.2 Installed Inflate ────────────────────────── v0.1.5 Installed ADTypes ────────────────────────── v1.18.0 Installed MacroTools ─────────────────────── v0.5.16 Installed MLStyle ────────────────────────── v0.4.17 Installed URIs ───────────────────────────── v1.6.1 Installed DataStructures ─────────────────── v0.18.22 Installed DiffResults ────────────────────── v1.1.0 Installed TermInterface ──────────────────── v2.0.0 Installed ManualMemory ───────────────────── v0.1.8 Installed FillArrays ─────────────────────── v1.14.0 Installed AbstractTrees ──────────────────── v0.4.5 Installed Tricks ─────────────────────────── v0.1.12 Installed SparseMatrixColorings ──────────── v0.4.21 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed oneTBB_jll ─────────────────────── v2022.0.0+0 Installed ExprTools ──────────────────────── v0.1.10 Installed SciMLJacobianOperators ─────────── v0.1.11 Installed IntelOpenMP_jll ────────────────── v2025.2.0+0 Installed CommonSubexpressions ───────────── v0.3.1 Installed ArrayInterface ─────────────────── v7.20.0 Installed StatsBase ──────────────────────── v0.34.6 Installed RandomNumbers ──────────────────── v1.6.0 Installed LayoutPointers ─────────────────── v0.1.17 Installed ConcreteStructs ────────────────── v0.2.3 Installed GPUArraysCore ──────────────────── v0.2.0 Installed IrrationalConstants ────────────── v0.2.4 Installed TruncatedStacktraces ───────────── v1.4.0 Installed IntegerMathUtils ───────────────── v0.1.3 Installed ArrayLayouts ───────────────────── v1.11.2 Installed SimpleTraits ───────────────────── v0.9.5 Installed CompositeTypes ─────────────────── v0.1.4 Installed NonlinearSolveQuasiNewton ──────── v1.9.0 Installed Setfield ───────────────────────── v1.1.2 Installed PDMats ─────────────────────────── v0.11.35 Installed DocStringExtensions ────────────── v0.9.5 Installed BlockArrays ────────────────────── v1.7.2 Installed Moshi ──────────────────────────── v0.3.7 Installed ResettableStacks ───────────────── v1.1.1 Installed CompositionsBase ───────────────── v0.1.2 Installed DifferentiationInterface ───────── v0.6.54 Installed CommonSolve ────────────────────── v0.2.4 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed Ghostscript_jll ────────────────── v9.55.1+0 Installed ForwardDiff ────────────────────── v0.10.39 Installed Bijections ─────────────────────── v0.2.2 Installed FindFirstFunctions ─────────────── v1.4.2 Installed ComponentArrays ────────────────── v0.15.29 Installed Unityper ───────────────────────── v0.1.6 Installed AliasTables ────────────────────── v1.1.3 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed LineSearch ─────────────────────── v0.1.4 Installed Combinatorics ──────────────────── v1.0.2 Installed DynamicPolynomials ─────────────── v0.6.3 Installed FunctionWrappersWrappers ───────── v0.1.3 Installed DomainSets ─────────────────────── v0.7.16 Installed RecipesBase ────────────────────── v1.3.4 Installed SciMLOperators ─────────────────── v1.7.2 Installed DataAPI ────────────────────────── v1.16.0 Installed SciMLStructures ────────────────── v1.7.0 Installed StaticArrays ───────────────────── v1.9.15 Installed TaskLocalValues ────────────────── v0.1.3 Installed StaticArraysCore ───────────────── v1.4.3 Installed MultivariatePolynomials ────────── v0.5.9 Installed SciMLPublic ────────────────────── v1.0.0 Installed FunctionWrappers ───────────────── v1.1.3 Installed Requires ───────────────────────── v1.3.1 Installed Latexify ───────────────────────── v0.16.10 Installed Krylov ─────────────────────────── v0.10.2 Installed Symbolics ──────────────────────── v6.55.0 Installed LogExpFunctions ────────────────── v0.3.29 Installed NonlinearSolveFirstOrder ───────── v1.8.0 Installed DiffRules ──────────────────────── v1.15.1 Installed Rmath ──────────────────────────── v0.8.0 Installed FastClosures ───────────────────── v0.3.2 Installed FiniteDiff ─────────────────────── v2.28.1 Installed JuliaSyntax ────────────────────── v0.4.10 Installed SciMLBase ──────────────────────── v2.120.0 Installed Distributions ──────────────────── v0.25.122 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed TestItems ──────────────────────── v1.0.0 Installed StatsFuns ──────────────────────── v1.5.0 Installed Polyester ──────────────────────── v0.7.18 Installed JLLWrappers ────────────────────── v1.7.1 Installed Unitful ────────────────────────── v1.25.0 Installed MutableArithmetics ─────────────── v1.6.6 Installed SymbolicLimits ─────────────────── v0.2.3 Installed Primes ─────────────────────────── v0.5.7 Installed Accessors ──────────────────────── v0.1.42 Installed ThreadingUtilities ─────────────── v0.5.5 Installed JpegTurbo_jll ──────────────────── v3.1.3+0 Installed Graphs ─────────────────────────── v1.13.1 Installed Adapt ──────────────────────────── v4.4.0 Installed ConstructionBase ───────────────── v1.6.0 Installed RuntimeGeneratedFunctions ──────── v0.5.15 Installed ModelingToolkit ────────────────── v9.82.0 Installed PoissonRandom ──────────────────── v0.4.7 Installed HypergeometricFunctions ────────── v0.3.28 Installed Random123 ──────────────────────── v1.7.1 Installed SBML ───────────────────────────── v1.6.0 Installed Compat ─────────────────────────── v4.18.1 Installed StrideArraysCore ───────────────── v0.5.8 Installed SymbolicIndexingInterface ──────── v0.3.45 Installed Statistics ─────────────────────── v1.11.1 Installed ReactionNetworkImporters ───────── v0.16.1 Installed LazyArrays ─────────────────────── v2.7.0 Installed PrecompileTools ────────────────── v1.3.3 Installed PositiveFactorizations ─────────── v0.2.4 Installed StatsAPI ───────────────────────── v1.7.1 Installed TimerOutputs ───────────────────── v0.5.29 Installed CPUSummary ─────────────────────── v0.2.7 Installed OffsetArrays ───────────────────── v1.17.0 Installed Parameters ─────────────────────── v0.12.3 Installed ExproniconLite ─────────────────── v0.10.14 Installed ChainRulesCore ─────────────────── v1.26.0 Installed IfElse ─────────────────────────── v0.1.1 Installed PtrArrays ──────────────────────── v1.3.0 Installed MuladdMacro ────────────────────── v0.2.4 Installed XML2_jll ───────────────────────── v2.13.9+0 Installed DiffEqNoiseProcess ─────────────── v5.24.1 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed IntervalSets ───────────────────── v0.7.11 Installed SpecialFunctions ───────────────── v2.6.1 Installed SimpleNonlinearSolve ───────────── v2.7.0 Installed CommonMark ─────────────────────── v0.9.1 Installed PolyesterWeave ─────────────────── v0.2.2 Installed LineSearches ───────────────────── v7.4.0 Installing 8 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact oneTBB 435.6 KiB Installed artifact XML2 2.5 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Libiconv 1.9 MiB Installed artifact SBML 5.8 MiB Installed artifact Ghostscript 31.4 MiB Updating `~/.julia/environments/v1.13/Project.toml` [210efffb] + SBMLImporter v3.0.7 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.7.2 ⌃ [70df07ce] + BracketingNonlinearSolve v1.4.0 [2a0fbf3d] + CPUSummary v0.2.7 [479239e8] + Catalyst v15.0.8 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 ⌅ [861a8166] + Combinatorics v1.0.2 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [b0b7db55] + ComponentArrays v0.15.29 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [2b5f629d] + DiffEqBase v6.190.2 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.7.16 ⌃ [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.10.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.14 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.14.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff v2.28.1 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.6 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.19.1 [ba0b0d4f] + Krylov v0.10.2 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.7.0 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [7ed4a6bd] + LinearSolve v3.41.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 ⌅ [961ee093] + ModelingToolkit v9.82.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.6 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 ⌃ [8913a72c] + NonlinearSolve v4.10.0 ⌅ [be0214bd] + NonlinearSolveBase v1.16.1 ⌃ [5959db7a] + NonlinearSolveFirstOrder v1.8.0 ⌃ [9a2c21bd] + NonlinearSolveQuasiNewton v1.9.0 ⌃ [26075421] + NonlinearSolveSpectralMethods v1.4.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [b4db0fb7] + ReactionNetworkImporters v0.16.1 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [e5567a89] + SBML v1.6.0 [210efffb] + SBMLImporter v3.0.7 [9dfe8606] + SCCNonlinearSolve v1.6.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.120.0 [19f34311] + SciMLJacobianOperators v0.1.11 [c0aeaf25] + SciMLOperators v1.7.2 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 ⌃ [727e6d20] + SimpleNonlinearSolve v2.7.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.21 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.45 ⌃ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.32.0 [0c5d862f] + Symbolics v6.55.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.12 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.0 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [bb12108a] + SBML_jll v5.20.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 15.93s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4423.1 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 2039.16s ################################################################################ # Testing # Testing SBMLImporter Status `/tmp/jl_cqFVaQ/Project.toml` [4c88cf16] Aqua v0.8.14 [336ed68f] CSV v0.10.15 [479239e8] Catalyst v15.0.8 [b0b7db55] ComponentArrays v0.15.29 [a93c6f00] DataFrames v1.8.0 [2b5f629d] DiffEqBase v6.190.2 [ccbc3e58] JumpProcesses v9.19.1 ⌅ [961ee093] ModelingToolkit v9.82.0 [6ad6398a] OrdinaryDiffEqBDF v1.10.1 [43230ef6] OrdinaryDiffEqRosenbrock v1.18.1 [aea7be01] PrecompileTools v1.3.3 [b4db0fb7] ReactionNetworkImporters v0.16.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [e5567a89] SBML v1.6.0 [210efffb] SBMLImporter v3.0.7 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.120.0 [efcf1570] Setfield v1.1.2 [276daf66] SpecialFunctions v2.6.1 [f43a241f] Downloads v1.7.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_cqFVaQ/Manifest.toml` [47edcb42] ADTypes v1.18.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 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Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1521 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1217 wait_forever at ./task.jl:1139 jfptr_wait_forever_63711.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007ba0c9d7ac20 Total snapshots: 420. Utilization: 0% ╎420 @Base/task.jl:1139 wait_forever() 419╎ 420 @Base/task.jl:1217 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1497 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1217 wait_forever at ./task.jl:1139 jfptr_wait_forever_63711.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1217 wait_forever at ./task.jl:1139 jfptr_wait_forever_63711.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007956586931c0 Total snapshots: 142. Utilization: 0% ╎142 @Base/task.jl:1139 wait_forever() 141╎ 142 @Base/task.jl:1217 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1217 wait_forever at ./task.jl:1139 jfptr_wait_forever_63711.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 31336914 (Pool: 31335968; Big: 946); GC: 49 [1497] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/fgd6w/test/aqua.jl:4 [1521] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/fgd6w/src/SBMLImporter.jl:3 gc_try_claim_and_push at /source/src/gc-stock.c:1691 [inlined] gc_mark_objarray at /source/src/gc-stock.c:1844 gc_mark_outrefs at /source/src/gc-stock.c:2419 [inlined] gc_mark_loop_serial_ at /source/src/gc-stock.c:2526 gc_mark_loop_serial at /source/src/gc-stock.c:2549 gc_mark_loop at /source/src/gc-stock.c:2737 [inlined] _jl_gc_collect at /source/src/gc-stock.c:3082 ijl_gc_collect at /source/src/gc-stock.c:3491 maybe_collect at /source/src/gc-stock.c:349 [inlined] jl_gc_small_alloc_inner at /source/src/gc-stock.c:725 jl_gc_small_alloc_noinline at /source/src/gc-stock.c:783 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:797 jl_typemap_alloc at /source/src/typemap.c:1498 jl_method_table_add at /source/src/gf.c:2702 jl_add_methods at /source/src/staticdata_utils.c:871 [inlined] jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4281 jl_restore_package_image_from_stream at /source/src/staticdata.c:4353 ijl_restore_incremental at /source/src/staticdata.c:4431 #_include_from_serialized#871 at ./loading.jl:1279 _include_from_serialized at ./loading.jl:1251 [inlined] #_require_search_from_serialized#888 at ./loading.jl:2113 _require_search_from_serialized at ./loading.jl:2020 [inlined] __require_prelocked at ./loading.jl:2670 _require_prelocked at ./loading.jl:2536 macro expansion at ./loading.jl:2464 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2428 jfptr___require_69815.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:908 require at ./loading.jl:2404 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_import at ./module.jl:101 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_eval_module_expr at /source/src/toplevel.c:248 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:650 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2954 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3014 include at ./Base.jl:309 __require_prelocked at ./loading.jl:2777 _require_prelocked at ./loading.jl:2536 _require_prelocked at ./loading.jl:2530 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2528 jfptr___require_69856.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:908 require at ./loading.jl:2526 jfptr_require_31664.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_42565.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7ba0e014c249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 6971945 (Pool: 6971750; Big: 195); GC: 13 _ZN4llvm11InstVisitorINS_16InstCombinerImplEPNS_11InstructionEE5visitERS2_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) unknown function (ip: 0x74d6867fc67f) at (unknown file) unknown function (ip: (nil)) at (unknown file) Allocations: 23225659 (Pool: 23224708; Big: 951); GC: 23 PkgEval terminated after 2750.55s: test duration exceeded the time limit