Package evaluation of ParameterEstimation on Julia 1.13.0-DEV.1265 (cd62cf9a08*) started at 2025-10-06T09:48:16.161 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.83s ################################################################################ # Installation # Installing ParameterEstimation... Resolving package versions... Installed MKL_jll ───────────────────────────── v2025.2.0+0 Installed Glob ──────────────────────────────── v1.3.1 Installed CommonWorldInvalidations ──────────── v1.0.0 Installed FastPower ─────────────────────────── v1.1.3 Installed SymbolicUtils ─────────────────────── v3.32.0 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed AlmostBlockDiagonals ──────────────── v0.1.10 Installed Sundials ──────────────────────────── v4.28.0 Installed OrdinaryDiffEqRosenbrock ──────────── v1.18.1 Installed OrderedCollections ────────────────── v1.8.1 Installed Functors ──────────────────────────── v0.5.2 Installed BaryRational ──────────────────────── v1.1.1 Installed Optim ─────────────────────────────── v1.13.2 Installed PreallocationTools ────────────────── v0.4.34 Installed EnzymeCore ────────────────────────── v0.8.14 Installed BoundaryValueDiffEqShooting ───────── v1.9.0 Installed ChainRules ────────────────────────── v1.72.6 Installed CpuId ─────────────────────────────── v0.3.1 Installed OrdinaryDiffEqExponentialRK ───────── v1.8.0 Installed NonlinearSolveSpectralMethods ─────── v1.5.0 Installed ElasticArrays ─────────────────────── v1.2.12 Installed AbstractLattices ──────────────────── v0.3.1 Installed AbstractAlgebra ───────────────────── v0.44.13 Installed OrdinaryDiffEqFIRK ────────────────── v1.16.0 Installed DispatchDoctor ────────────────────── v0.4.26 Installed BoundaryValueDiffEqFIRK ───────────── v1.9.0 Installed FLINT_jll ─────────────────────────── v300.200.201+0 Installed Distances ─────────────────────────── v0.10.12 Installed NaNMath ───────────────────────────── v1.1.3 Installed StaticArrayInterface ──────────────── v1.8.0 Installed QuadGK ────────────────────────────── v2.11.2 Installed DiffEqCallbacks ───────────────────── v4.9.0 Installed DynamicQuantities ─────────────────── v1.10.0 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed StructuralIdentifiability ─────────── v0.5.16 Installed TreeViews 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Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact oneTBB 435.6 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact MPC 209.8 KiB Installed artifact SymEngine 1.7 MiB Installed artifact Sundials 2.1 MiB Installed artifact XML2 2.5 MiB Installed artifact Libiconv 1.9 MiB Installed artifact OpenBLAS32 10.0 MiB Installed artifact Ghostscript 31.4 MiB Installed artifact FLINT 19.3 MiB Updating `~/.julia/environments/v1.13/Project.toml` [b4cd1eb8] + ParameterEstimation v0.4.4 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.18.0 ⌅ [c3fe647b] + AbstractAlgebra v0.44.13 [398f06c4] + AbstractLattices v0.3.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [a95523ee] + AlmostBlockDiagonals v0.1.10 ⌃ [fb37089c] + Arblib v1.4.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [a9b6321e] + 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 25.01s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4509.7 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 2335.33s ################################################################################ # Testing # Testing ParameterEstimation Status `/tmp/jl_XBF1I8/Project.toml` [91aaffc3] BaryRational v1.1.1 [0c46a032] DifferentialEquations v7.16.1 ⌅ [f6369f11] ForwardDiff v0.10.39 [0b43b601] Groebner v0.9.5 [f213a82b] HomotopyContinuation v2.15.1 [7ed4a6bd] LinearSolve v3.41.0 [961ee093] ModelingToolkit v10.24.0 ⌅ [2edaba10] Nemo v0.49.5 [bac558e1] OrderedCollections v1.8.1 [b4cd1eb8] ParameterEstimation v0.4.4 [aea7be01] PrecompileTools v1.3.3 [92933f4c] ProgressMeter v1.11.0 [cf7bdac0] SIAN v1.7.0 [220ca800] StructuralIdentifiability v0.5.16 [fd094767] Suppressor v0.2.8 ⌅ [b36ab563] TaylorDiff v0.2.5 [6aa5eb33] TaylorSeries v0.20.7 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_XBF1I8/Manifest.toml` [47edcb42] ADTypes v1.18.0 ⌅ [c3fe647b] 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[efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1883 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1217 wait_forever at ./task.jl:1139 jfptr_wait_forever_63711.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000778847b54880 Total snapshots: 447. Utilization: 0% ╎447 @Base/task.jl:1139 wait_forever() 446╎ 447 @Base/task.jl:1217 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1217 wait_forever at ./task.jl:1139 jfptr_wait_forever_63711.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007d3fb72931c0 Total snapshots: 414. Utilization: 0% ╎414 @Base/task.jl:1139 wait_forever() 413╎ 414 @Base/task.jl:1217 wait() [1883] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/ParameterEstimation/2RBZa/test/runtests.jl:2 obviously_unequal at /source/src/subtype.c:464 obviously_unequal at /source/src/subtype.c:485 ijl_types_equal at /source/src/subtype.c:2328 jl_specializations_get_linfo_ at /source/src/gf.c:236 jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4101 jl_restore_package_image_from_stream at /source/src/staticdata.c:4353 ijl_restore_incremental at /source/src/staticdata.c:4431 #_include_from_serialized#871 at ./loading.jl:1279 _include_from_serialized at ./loading.jl:1251 [inlined] #_require_search_from_serialized#888 at ./loading.jl:2126 _require_search_from_serialized at ./loading.jl:2020 [inlined] _tryrequire_from_serialized at ./loading.jl:1963 _tryrequire_from_serialized at ./loading.jl:2007 __require_prelocked at ./loading.jl:2753 _require_prelocked at ./loading.jl:2536 macro expansion at ./loading.jl:2464 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2428 jfptr___require_69815.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:908 require at ./loading.jl:2404 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_65790.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:2954 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3014 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_56488.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_42565.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x77885ef6f249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 4404721 (Pool: 4404482; Big: 239); GC: 11 PkgEval terminated after 2749.84s: test duration exceeded the time limit