Package evaluation of CellularPotts on Julia 1.13.0-DEV.1265 (cd62cf9a08*) started at 2025-10-06T05:25:01.862 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.9s ################################################################################ # Installation # Installing CellularPotts... Resolving package versions... Installed Cairo_jll ──────────────────── v1.18.5+0 Installed libaom_jll ─────────────────── v3.12.1+0 Installed HarfBuzz_jll ───────────────── v8.5.1+0 Installed Bzip2_jll ──────────────────── v1.0.9+0 Installed Libtiff_jll ────────────────── v4.7.2+0 Installed libass_jll ─────────────────── v0.17.4+0 Installed Libuuid_jll ────────────────── v2.41.2+0 Installed Qt6Base_jll ────────────────── v6.8.2+1 Installed fzf_jll ────────────────────── v0.61.1+0 Installed Graphite2_jll ──────────────── v1.3.15+0 Installed Fontconfig_jll ─────────────── v2.17.1+0 Installed NaNMath ────────────────────── v1.1.3 Installed OrderedCollections ─────────── v1.8.1 Installed PlotThemes ─────────────────── v3.3.0 Installed libinput_jll ───────────────── v1.28.1+0 Installed Xorg_libXinerama_jll ───────── v1.1.6+0 Installed LZO_jll ────────────────────── v2.10.3+0 Installed Opus_jll ───────────────────── v1.5.2+0 Installed Ogg_jll ────────────────────── v1.3.6+0 Installed Xorg_libxcb_jll ────────────── v1.17.1+0 Installed Unzip ──────────────────────── v0.2.0 Installed Tables ─────────────────────── v1.12.1 Installed Reexport ───────────────────── v1.2.2 Installed LERC_jll ───────────────────── v4.0.1+0 Installed Missings ───────────────────── v1.2.0 Installed FFMPEG ─────────────────────── v0.4.4 Installed RegistryInstances ──────────── v0.1.0 Installed TableTraits ────────────────── v1.0.1 Installed Xorg_xcb_util_wm_jll ───────── v0.4.2+0 Installed Preferences ────────────────── v1.5.0 Installed LLVMOpenMP_jll ─────────────── v18.1.8+0 Installed Grisu ──────────────────────── v1.0.2 Installed LaTeXStrings ───────────────── v1.4.0 Installed Crayons ────────────────────── v4.1.1 Installed SortingAlgorithms ──────────── v1.2.2 Installed Format ─────────────────────── v1.3.7 Installed Xorg_libICE_jll ────────────── v1.1.2+0 Installed eudev_jll ──────────────────── v3.2.14+0 Installed EpollShim_jll ──────────────── v0.0.20230411+1 Installed OpenSSH_jll ────────────────── v10.0.2+0 Installed DelimitedFiles ─────────────── v1.9.1 Installed Inflate ────────────────────── v0.1.5 Installed URIs ───────────────────────── v1.6.1 Installed AbstractTrees ──────────────── v0.4.5 Installed MacroTools ─────────────────── v0.5.16 Installed ArnoldiMethod ──────────────── v0.4.0 Installed DataStructures ─────────────── v0.19.1 Installed UnicodeFun ─────────────────── v0.4.1 Installed StatsBase ──────────────────── v0.34.6 Installed Xorg_libXau_jll ────────────── v1.0.13+0 Installed x264_jll ───────────────────── v10164.0.1+0 Installed Xorg_xcb_util_jll ──────────── v0.4.1+0 Installed CodecZlib ──────────────────── v0.7.8 Installed Xorg_libXfixes_jll ─────────── v6.0.2+0 Installed mtdev_jll ──────────────────── v1.1.7+0 Installed DataValueInterfaces ────────── v1.0.0 Installed CEnum ──────────────────────── v0.5.0 Installed LoggingExtras ──────────────── v1.2.0 Installed Libffi_jll ─────────────────── v3.4.7+0 Installed Qt6ShaderTools_jll ─────────── v6.8.2+1 Installed Pixman_jll ─────────────────── v0.44.2+0 Installed Expat_jll ──────────────────── v2.7.1+0 Installed libdecor_jll ───────────────── v0.2.2+0 Installed IrrationalConstants ────────── v0.2.4 Installed StructUtils ────────────────── v2.5.0 Installed Contour ────────────────────── v0.6.3 Installed Xorg_libXcursor_jll ────────── v1.2.4+0 Installed libpng_jll ─────────────────── v1.6.50+0 Installed ColorVectorSpace ───────────── v0.11.0 Installed StableRNGs ─────────────────── v1.0.3 Installed SimpleTraits ───────────────── v0.9.5 Installed libfdk_aac_jll ─────────────── v2.0.4+0 Installed BitFlags ───────────────────── v0.1.9 Installed Xorg_xcb_util_keysyms_jll ──── v0.4.1+0 Installed HTTP ───────────────────────── v1.10.19 Installed IOCapture ──────────────────── v0.2.5 Installed SimpleBufferStream ─────────── v1.2.0 Installed Scratch ────────────────────── v1.3.0 Installed FFMPEG_jll ─────────────────── v7.1.1+0 Installed DocStringExtensions ────────── v0.9.5 Installed Qt6Declarative_jll ─────────── v6.8.2+1 Installed Ghostscript_jll ────────────── v9.55.1+0 Installed JLFzf ──────────────────────── v0.1.11 Installed AliasTables ────────────────── v1.1.3 Installed RelocatableFolders ─────────── v1.0.1 Installed ConcurrentUtilities ────────── v2.5.0 Installed IteratorInterfaceExtensions ── v1.0.0 Installed RecipesBase ────────────────── v1.3.4 Installed DataAPI ────────────────────── v1.16.0 Installed Git_LFS_jll ────────────────── v3.7.0+0 Installed Plots ──────────────────────── v1.41.1 Installed Xorg_libXi_jll ─────────────── v1.8.3+0 Installed libevdev_jll ───────────────── v1.13.4+0 Installed Wayland_jll ────────────────── v1.24.0+0 Installed Colors ─────────────────────── v0.13.1 Installed Measures ───────────────────── v0.3.2 Installed StaticArraysCore ───────────── v1.4.3 Installed Xorg_libxkbfile_jll ────────── v1.1.3+0 Installed Documenter ─────────────────── v1.14.1 Installed ColorSchemes ───────────────── v3.31.0 Installed Libglvnd_jll ───────────────── v1.7.1+1 Installed StaticArrays ───────────────── v1.9.15 Installed Latexify ───────────────────── v0.16.10 Installed Xorg_xkbcomp_jll ───────────── v1.4.7+0 Installed StringManipulation ─────────── v0.4.1 Installed ColorTypes ─────────────────── v0.12.1 Installed Glib_jll ───────────────────── v2.86.0+0 Installed Requires ───────────────────── v1.3.1 Installed LogExpFunctions ────────────── v0.3.29 Installed JSON ───────────────────────── v1.0.1 Installed Vulkan_Loader_jll ──────────── v1.3.243+0 Installed Xorg_xcb_util_cursor_jll ───── v0.1.6+0 Installed Git_jll ────────────────────── v2.51.1+0 Installed Xorg_xcb_util_renderutil_jll ─ v0.3.10+0 Installed Parsers ────────────────────── v2.8.3 Installed PrettyTables ───────────────── v2.4.0 Installed Xorg_xkeyboard_config_jll ──── v2.44.0+0 Installed Xorg_libXdmcp_jll ──────────── v1.1.6+0 Installed XZ_jll ─────────────────────── v5.8.1+0 Installed x265_jll ───────────────────── v4.1.0+0 Installed JLLWrappers ────────────────── v1.7.1 Installed Xorg_libSM_jll ─────────────── v1.2.6+0 Installed Pango_jll ──────────────────── v1.56.4+0 Installed JpegTurbo_jll ──────────────── v3.1.3+0 Installed Xorg_xtrans_jll ────────────── v1.6.0+0 Installed RecipesPipeline ────────────── v0.6.12 Installed GR_jll ─────────────────────── v0.73.17+0 Installed Libmount_jll ───────────────── v2.41.2+0 Installed Graphs ─────────────────────── v1.13.1 Installed Dbus_jll ───────────────────── v1.16.2+0 Installed Xorg_libX11_jll ────────────── v1.8.12+0 Installed ExceptionUnwrapping ────────── v0.1.11 Installed PlotUtils ──────────────────── v1.4.3 Installed TensorCore ─────────────────── v0.1.1 Installed TranscodingStreams ─────────── v0.11.3 Installed Literate ───────────────────── v2.20.1 Installed Statistics ─────────────────── v1.11.1 Installed StatsAPI ───────────────────── v1.7.1 Installed MbedTLS ────────────────────── v1.1.9 Installed OffsetArrays ───────────────── v1.17.0 Installed OpenSSL ────────────────────── v1.5.0 Installed PrecompileTools ────────────── v1.3.3 Installed MarkdownAST ────────────────── v0.1.2 Installed Metis ──────────────────────── v1.5.0 Installed xkbcommon_jll ──────────────── v1.9.2+0 Installed Xorg_xcb_util_image_jll ────── v0.4.1+0 Installed GLFW_jll ───────────────────── v3.4.0+2 Installed GettextRuntime_jll ─────────── v0.22.4+0 Installed FriBidi_jll ────────────────── v1.0.17+0 Installed LAME_jll ───────────────────── v3.100.3+0 Installed Xorg_libXrender_jll ────────── v0.9.12+0 Installed libvorbis_jll ──────────────── v1.3.8+0 Installed Git ────────────────────────── v1.5.0 Installed PtrArrays ──────────────────── v1.3.0 Installed LazilyInitializedFields ────── v1.3.0 Installed Showoff ────────────────────── v1.0.3 Installed FixedPointNumbers ──────────── v0.8.5 Installed FreeType2_jll ──────────────── v2.13.4+0 Installed MbedTLS_jll ────────────────── v2.28.6+2 Installed Xorg_libXext_jll ───────────── v1.3.7+0 Installed Libiconv_jll ───────────────── v1.18.0+0 Installed ANSIColoredPrinters ────────── v0.0.1 Installed METIS_jll ──────────────────── v5.1.3+0 Installed Xorg_libXrandr_jll ─────────── v1.5.5+0 Installed Qt6Wayland_jll ─────────────── v6.8.2+1 Installed CellularPotts ──────────────── v0.3.6 Installed GR ─────────────────────────── v0.73.17 Installing 79 artifacts Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact FreeType2 1.5 MiB Installed artifact METIS 1.1 MiB Installed artifact x265 1.4 MiB Installed artifact fzf 3.3 MiB Installed artifact Xorg_xcb_util_renderutil 32.1 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Xorg_xcb_util_keysyms 17.8 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Pango 1.1 MiB Installed artifact MbedTLS 2.1 MiB Installed artifact Xorg_libSM 164.1 KiB Installed artifact XZ 1.5 MiB Installed artifact Fontconfig 984.8 KiB Installed artifact Xorg_xcb_util 39.5 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Glib 7.7 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact mtdev 79.6 KiB Installed artifact libinput 1.0 MiB Installed artifact x264 2.1 MiB Installed artifact libdecor 44.1 KiB Installed artifact libevdev 117.1 KiB Installed artifact Expat 274.7 KiB Installed artifact eudev 3.9 MiB Installed artifact LERC 272.9 KiB Installed artifact libpng 328.4 KiB Installed artifact Opus 925.5 KiB Installed artifact Qt6Wayland 2.2 MiB Installed artifact Libmount 6.5 MiB Installed artifact LAME 292.5 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Xorg_libICE 384.9 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Qt6ShaderTools 2.1 MiB Installed artifact OpenSSH 4.2 MiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact LZO 208.9 KiB Installed artifact libass 427.8 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Xorg_xcb_util_cursor 27.6 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Ghostscript 31.4 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Git_LFS 9.6 MiB Installed artifact Libuuid 3.7 MiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Libtiff 2.3 MiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact libvorbis 271.0 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Pixman 372.2 KiB Installed artifact Qt6Declarative 21.6 MiB Installed artifact Wayland 390.6 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Vulkan_Loader 177.3 KiB Installed artifact GLFW 180.1 KiB Installed artifact libaom 6.4 MiB Installed artifact xkbcommon 263.7 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Xorg_xcb_util_wm 147.9 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Dbus 489.8 KiB Installed artifact Xorg_xcb_util_image 54.3 KiB Installed artifact Libffi 44.2 KiB Installed artifact GR 16.2 MiB Installed artifact Ogg 250.3 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Qt6Base 20.6 MiB Installed artifact Cairo 2.2 MiB Installed artifact FFMPEG 11.4 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Git 48.9 MiB Updating `~/.julia/environments/v1.13/Project.toml` [11b7dee7] + CellularPotts v0.3.6 Updating `~/.julia/environments/v1.13/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [11b7dee7] + CellularPotts v0.3.6 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.14.1 [460bff9d] + ExceptionUnwrapping v0.1.11 [c87230d0] + FFMPEG v0.4.4 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [28b8d3ca] + GR v0.73.17 [d7ba0133] + Git v1.5.0 [86223c79] + Graphs v1.13.1 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.19 [b5f81e59] + IOCapture v0.2.5 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.0.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [0e77f7df] + LazilyInitializedFields v1.3.0 [98b081ad] + Literate v2.20.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [d0879d2d] + MarkdownAST v0.1.2 [739be429] + MbedTLS v1.1.9 [442fdcdd] + 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Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 34.35s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4657.9 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:76 Precompiling package dependencies... Precompilation completed after 1579.61s ################################################################################ # Testing # Testing CellularPotts Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_xHrwvB/Project.toml` [6e4b80f9] + BenchmarkTools v1.6.0 [11b7dee7] + CellularPotts v0.3.6 [0c46a032] + DifferentialEquations v7.16.1 Updating `/tmp/jl_xHrwvB/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [a95523ee] + AlmostBlockDiagonals v0.1.10 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [aae01518] + BandedMatrices v1.9.4 [6e4b80f9] + BenchmarkTools v1.6.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] + BoundaryValueDiffEq v5.18.0 [7227322d] + BoundaryValueDiffEqAscher v1.8.0 [56b672f2] + BoundaryValueDiffEqCore v1.11.1 [85d9eb09] + BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] + BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] + BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] + BoundaryValueDiffEqShooting v1.9.0 [70df07ce] + BracketingNonlinearSolve v1.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [11b7dee7] + CellularPotts v0.3.6 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 ⌅ [864edb3b] ↓ DataStructures v0.19.1 ⇒ v0.18.22 [bcd4f6db] + DelayDiffEq v5.61.0 [2b5f629d] + DiffEqBase v6.190.2 [459566f4] + DiffEqCallbacks v4.9.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [0c46a032] + DifferentialEquations v7.16.1 [a0c0ee7d] + DifferentiationInterface v0.7.8 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.14 [d4d017d3] + ExponentialUtilities v1.27.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [9d29842c] + FastAlmostBandedMatrices v0.1.5 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 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v3.37.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.120.0 [19f34311] + SciMLJacobianOperators v0.1.11 [c0aeaf25] + SciMLOperators v1.7.2 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.9.0 [ce78b400] + SimpleUnPack v1.1.0 [9f842d2f] + SparseConnectivityTracer v1.1.0 [0a514795] + SparseMatrixColorings v0.4.21 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.0 [0d7ed370] + StaticArrayInterface v1.8.0 [4c63d2b9] + StatsFuns v1.5.0 [9672c7b4] + SteadyStateDiffEq v2.7.0 [789caeaf] + StochasticDiffEq v6.82.0 [7792a7ef] + StrideArraysCore v0.5.8 [ec057cc2] - StructUtils v2.5.0 ⌅ [c3572dad] + Sundials v4.28.0 ⌃ [2efcf032] + SymbolicIndexingInterface v0.3.44 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [9fa8497b] + Future v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [9abbd945] + Profile v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_xHrwvB/Project.toml` [6e4b80f9] BenchmarkTools v1.6.0 [11b7dee7] CellularPotts v0.3.6 [35d6a980] ColorSchemes v3.31.0 [5ae59095] Colors v0.13.1 [0c46a032] DifferentialEquations v7.16.1 [e30172f5] Documenter v1.14.1 [86223c79] Graphs v1.13.1 [98b081ad] Literate v2.20.1 [2679e427] Metis v1.5.0 [6fe1bfb0] OffsetArrays v1.17.0 [91a5bcdd] Plots v1.41.1 ⌅ [08abe8d2] PrettyTables v2.4.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.6 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_xHrwvB/Manifest.toml` [47edcb42] ADTypes v1.18.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [a95523ee] AlmostBlockDiagonals v0.1.10 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.20.0 [4c555306] ArrayLayouts v1.11.2 [aae01518] BandedMatrices v1.9.4 [6e4b80f9] BenchmarkTools v1.6.0 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] BoundaryValueDiffEq v5.18.0 [7227322d] BoundaryValueDiffEqAscher v1.8.0 [56b672f2] BoundaryValueDiffEqCore v1.11.1 [85d9eb09] BoundaryValueDiffEqFIRK v1.9.0 [1a22d4ce] BoundaryValueDiffEqMIRK v1.9.0 [9255f1d6] BoundaryValueDiffEqMIRKN v1.8.0 [ed55bfe0] BoundaryValueDiffEqShooting v1.9.0 [70df07ce] BracketingNonlinearSolve v1.5.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [11b7dee7] CellularPotts v0.3.6 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [bcd4f6db] DelayDiffEq v5.61.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.190.2 [459566f4] DiffEqCallbacks v4.9.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [0c46a032] DifferentialEquations v7.16.1 [a0c0ee7d] DifferentiationInterface v0.7.8 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.14.1 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.14 [460bff9d] ExceptionUnwrapping v0.1.11 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [c87230d0] FFMPEG v0.4.4 [9d29842c] FastAlmostBandedMatrices v0.1.5 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.3 [1a297f60] FillArrays v1.14.0 [6a86dc24] FiniteDiff v2.28.1 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 ⌃ [f6369f11] ForwardDiff v0.10.39 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [28b8d3ca] GR v0.73.17 [c145ed77] GenericSchur v0.5.6 [d7ba0133] Git v1.5.0 [86223c79] Graphs v1.13.1 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.19 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [ccbc3e58] JumpProcesses v9.19.1 [ba0b0d4f] Krylov v0.10.2 [b964fa9f] 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PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Spaces or graphs, who's to say? | 3 3 4.4s Test Summary: | Pass Total Time Periodic grids | 8 8 0.1s Test Summary: | Pass Total Time Neighborhoods | 2 2 0.0s Test Summary: | Pass Total Time Lonely cells | 2 2 7.5s Test Summary: | Pass Total Time Testing positions keyword | 2 2 1.7s Test Summary: | Pass Total Time Adding Cell Properties | 6 6 1.1s Test Summary: | Pass Total Time Add/Delete Cells | 2 2 0.5s Test Summary: | Pass Total Time Penalty tests | 1 1 0.9s Test Summary: | Pass Total Time General Fragment Test | 1 1 3.8s Test Summary: | Pass Total Time Euler Characteristic | 2 2 2.4s Test Summary: | Pass Total Time Show me the CPM | 1 1 0.5s Test Summary: | Pass Total Time Hello World | 1 1 3.5s Test Summary: | Pass Total Time Going 3D | 1 1 4.7s Test Summary: | Pass Total Time Lets Get Moving | 1 1 5.0s Test Summary: | Pass Total Time OnPatrol | 1 1 13.3s Test Summary: | Pass Total Time Over Here | 1 1 3.2s Bringing ODEs To Life: Error During Test at /home/pkgeval/.julia/packages/CellularPotts/EuGHg/test/runtests.jl:294 Got exception outside of a @test LoadError: syntax: invalid assignment location "begin local ##S#334 = nestprob_p # views.jl, line 117 # views.jl, line 117 Base.maybeview(##S#334, 3:Base.lastindex(##S#334)) end" around /home/pkgeval/.julia/packages/BoundaryValueDiffEqFIRK/jSCuy/src/collocation.jl:135 Stacktrace: [1] top-level scope @ ~/.julia/packages/BoundaryValueDiffEqFIRK/jSCuy/src/collocation.jl:117 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [3] top-level scope @ ~/.julia/packages/BoundaryValueDiffEqFIRK/jSCuy/src/BoundaryValueDiffEqFIRK.jl:56 [4] include(mod::Module, _path::String) @ Base ./Base.jl:309 [5] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [6] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [7] macro expansion @ ./loading.jl:2464 [inlined] [8] macro expansion @ ./lock.jl:376 [inlined] [9] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [10] require @ ./loading.jl:2404 [inlined] [11] eval_import_path @ ./module.jl:36 [inlined] [12] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [13] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [14] top-level scope @ ~/.julia/packages/BoundaryValueDiffEq/l3e5k/src/BoundaryValueDiffEq.jl:6 [15] include(mod::Module, _path::String) @ Base ./Base.jl:309 [16] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [17] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [18] macro expansion @ ./loading.jl:2464 [inlined] [19] macro expansion @ ./lock.jl:376 [inlined] [20] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [21] require @ ./loading.jl:2404 [inlined] [22] eval_import_path @ ./module.jl:36 [inlined] [23] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [24] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [25] top-level scope @ ~/.julia/packages/DifferentialEquations/eQbP8/src/DifferentialEquations.jl:12 [26] include(mod::Module, _path::String) @ Base ./Base.jl:309 [27] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [28] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [29] macro expansion @ ./loading.jl:2464 [inlined] [30] macro expansion @ ./lock.jl:376 [inlined] [31] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [32] require @ ./loading.jl:2404 [inlined] [33] eval_import_path @ ./module.jl:36 [inlined] [34] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [35] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [36] top-level scope @ ~/.julia/packages/CellularPotts/EuGHg/docs/src/ExampleGallery/BringingODEsToLife/BringingODEsToLife.jl:6 [37] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [38] top-level scope @ ~/.julia/packages/CellularPotts/EuGHg/test/runtests.jl:296 [39] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1952 [inlined] [40] macro expansion @ ~/.julia/packages/CellularPotts/EuGHg/test/runtests.jl:301 [inlined] [41] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [42] top-level scope @ none:6 [43] eval(m::Module, e::Any) @ Core ./boot.jl:489 [44] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [45] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/BoundaryValueDiffEqFIRK/jSCuy/src/collocation.jl:117 in expression starting at /home/pkgeval/.julia/packages/BoundaryValueDiffEqFIRK/jSCuy/src/BoundaryValueDiffEqFIRK.jl:1 in expression starting at /home/pkgeval/.julia/packages/BoundaryValueDiffEq/l3e5k/src/BoundaryValueDiffEq.jl:1 in expression starting at /home/pkgeval/.julia/packages/DifferentialEquations/eQbP8/src/DifferentialEquations.jl:1 in expression starting at /home/pkgeval/.julia/packages/CellularPotts/EuGHg/docs/src/ExampleGallery/BringingODEsToLife/BringingODEsToLife.jl:6 Test Summary: | Error Total Time Bringing ODEs To Life | 1 1 12m29.3s RNG of the outermost testset: Xoshiro(0xcc947803729c82b4, 0x1dbc63f5c55afe11, 0x95cc970b7e2e8504, 0xec736d8d975d57cc, 0x89f095fd5d237c8f) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/CellularPotts/EuGHg/test/runtests.jl:294 Testing failed after 982.9s ERROR: LoadError: Package CellularPotts errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2673 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 2651.5s: package tests unexpectedly errored