Package evaluation of BioMakie on Julia 1.13.0-DEV.1265 (cd62cf9a08*) started at 2025-10-06T09:44:05.348 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.5s ################################################################################ # Installation # Installing BioMakie... Resolving package versions... Installed ImageIO ───────────────────── v0.6.9 Installed CommonWorldInvalidations ──── v1.0.0 Installed libaom_jll ────────────────── v3.12.1+0 Installed libass_jll ────────────────── v0.17.4+0 Installed Libuuid_jll ───────────────── v2.41.2+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed MosaicViews ───────────────── v0.3.4 Installed PolygonOps ────────────────── v0.1.2 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed Extents ───────────────────── v0.1.6 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed Xorg_libXinerama_jll ──────── v1.1.6+0 Installed OrderedCollections ────────── v1.8.1 Installed NearestNeighbors ──────────── v0.4.22 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed Colorfy ───────────────────── v1.1.2 Installed TransmuteDims ─────────────── v0.1.17 Installed TensorCast ────────────────── v0.4.9 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed FileIO ────────────────────── v1.17.0 Installed ChainRules ────────────────── v1.72.6 Installed Giflib_jll ────────────────── v5.2.3+0 Installed Distances ─────────────────── v0.10.12 Installed PairwiseListMatrices ──────── v0.11.1 Installed StaticArrayInterface ──────── v1.8.0 Installed QuadGK ────────────────────── v2.11.2 Installed NaNMath ───────────────────── v1.1.3 Installed libinchi_jll ──────────────── v1.6.0+0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Graphics ──────────────────── v1.1.3 Installed AdaptivePredicates ────────── v1.2.0 Installed Opus_jll ──────────────────── v1.5.2+0 Installed PackageExtensionCompat ────── v1.0.2 Installed BioAlignments ─────────────── v3.1.0 Installed ScopedValues ──────────────── v1.5.0 Installed WoodburyMatrices ──────────── v1.0.0 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed Tables ────────────────────── v1.12.1 Installed Ogg_jll ───────────────────── v1.3.6+0 Installed EnumX ─────────────────────── v1.0.5 Installed InverseFunctions ──────────── v0.1.17 Installed LZO_jll ───────────────────── v2.10.3+0 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed Hyperscript ───────────────── v0.0.5 Installed Preferences ───────────────── v1.5.0 Installed Static ────────────────────── v1.3.0 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Imath_jll ─────────────────── v3.1.11+0 Installed GLMakie ───────────────────── v0.11.11 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed TableTraits ───────────────── v1.0.1 Installed MappedArrays ──────────────── v0.4.2 Installed LaTeXStrings ──────────────── v1.4.0 Installed SortingAlgorithms ─────────── v1.2.2 Installed RangeArrays ───────────────── v0.3.2 Installed Grisu ─────────────────────── v1.0.2 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed CRlibm ────────────────────── v1.0.2 Installed Inflate ───────────────────── v0.1.5 Installed Format ────────────────────── v1.3.7 Installed Indexing ──────────────────── v1.1.1 Installed MacroTools ────────────────── v0.5.16 Installed ColorBrewer ───────────────── v0.4.1 Installed DiffResults ───────────────── v1.1.0 Installed URIs ──────────────────────── v1.6.1 Installed DataStructures ────────────── v0.18.22 Installed Quaternions ───────────────── v0.7.6 Installed StridedViews ──────────────── v0.4.1 Installed Packing ───────────────────── v0.5.1 Installed OpenEXR_jll ───────────────── v3.2.4+0 Installed MakieCore ─────────────────── v0.9.5 Installed AbstractTrees ─────────────── v0.4.5 Installed LazyModules ───────────────── v0.3.1 Installed FillArrays ────────────────── v1.14.0 Installed MathTeXEngine ─────────────── v0.6.6 Installed DelimitedFiles ────────────── v1.9.1 Installed oneTBB_jll ────────────────── v2022.0.0+0 Installed ArnoldiMethod ─────────────── v0.4.0 Installed UnicodeFun ────────────────── v0.4.1 Installed x264_jll ──────────────────── v10164.0.1+0 Installed CodecZlib ─────────────────── v0.7.8 Installed StatsBase ─────────────────── v0.34.6 Installed Cairo ─────────────────────── v1.1.1 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed Zygote ────────────────────── v0.7.10 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed Observables ───────────────── v0.5.5 Installed ArrayInterface ────────────── v7.20.0 Installed DataValueInterfaces ───────── v1.0.0 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed TransformsBase ────────────── v1.6.0 Installed CEnum ─────────────────────── v0.5.0 Installed CommonSubexpressions ──────── v0.3.1 Installed Libffi_jll ────────────────── v3.4.7+0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed LoggingExtras ─────────────── v1.2.0 Installed Expat_jll ─────────────────── v2.7.1+0 Installed RealDot ───────────────────── v0.1.0 Installed IrrationalConstants ───────── v0.2.4 Installed GPUArraysCore ─────────────── v0.2.0 Installed coordgenlibs_jll ──────────── v3.0.2+0 Installed libdecor_jll ──────────────── v0.2.2+0 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed libpng_jll ────────────────── v1.6.50+0 Installed Contour ───────────────────── v0.6.3 Installed isoband_jll ───────────────── v0.2.3+0 Installed SimpleTraits ──────────────── v0.9.5 Installed ColorVectorSpace ──────────── v0.11.0 Installed DataValues ────────────────── v0.4.13 Installed HTTP ──────────────────────── v1.10.19 Installed ImageMetadata ─────────────── v0.9.10 Installed RoundingEmulator ──────────── v0.2.1 Installed StableRNGs ────────────────── v1.0.3 Installed ImageShow ─────────────────── v0.3.8 Installed BitFlags ──────────────────── v0.1.9 Installed Interpolations ────────────── v0.15.1 Installed libfdk_aac_jll ────────────── v2.0.4+0 Installed libsixel_jll ──────────────── v1.10.5+0 Installed libwebp_jll ───────────────── v1.6.0+0 Installed Scratch ───────────────────── v1.3.0 Installed FASTX ─────────────────────── v2.1.7 Installed FFMPEG_jll ────────────────── v6.1.3+0 Installed SimpleBufferStream ────────── v1.2.0 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed ShaderAbstractions ────────── v0.5.0 Installed PDMats ────────────────────── v0.11.35 Installed GZip ──────────────────────── v0.6.2 Installed NamedArrays ───────────────── v0.10.5 Installed ImageCore ─────────────────── v0.10.5 Installed AxisArrays ────────────────── v0.4.8 Installed DocStringExtensions ───────── v0.9.5 Installed PNGFiles ──────────────────── v0.4.4 Installed BioSequences ──────────────── v3.5.0 Installed IntervalTrees ─────────────── v1.1.0 Installed JpegTurbo ─────────────────── v0.1.6 Installed CircularArrays ────────────── v1.4.0 Installed ForwardDiff ───────────────── v1.2.1 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed FreeType ──────────────────── v4.1.1 Installed LightXML ──────────────────── v0.9.2 Installed ColorSchemes ──────────────── v3.31.0 Installed PkgVersion ────────────────── v0.3.3 Installed CoordRefSystems ───────────── v0.18.10 Installed RelocatableFolders ────────── v1.0.1 Installed StackViews ────────────────── v0.1.2 Installed StringViews ───────────────── v1.3.5 Installed GLFW ──────────────────────── v3.4.5 Installed KernelDensity ─────────────── v0.6.10 Installed TiledIteration ────────────── v0.5.0 Installed AliasTables ───────────────── v1.1.3 Installed SplitApplyCombine ─────────── v1.2.3 Installed MolecularGraph ────────────── v0.18.0 Installed HashArrayMappedTries ──────── v0.2.0 Installed SparseInverseSubset ───────── v0.1.2 Installed ConcurrentUtilities ───────── v2.5.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Combinatorics ─────────────── v1.0.3 Installed SIMD ──────────────────────── v3.7.2 Installed RecipesBase ───────────────── v1.3.4 Installed DataAPI ───────────────────── v1.16.0 Installed MeshIO ────────────────────── v0.5.3 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed InvertedIndices ───────────── v1.3.1 Installed Netpbm ────────────────────── v1.1.1 Installed Wayland_jll ───────────────── v1.24.0+0 Installed Twiddle ───────────────────── v1.1.2 Installed ImageAxes ─────────────────── v0.6.12 Installed Colors ────────────────────── v0.13.1 Installed StaticArraysCore ──────────── v1.4.3 Installed Xorg_libxkbfile_jll ───────── v1.1.3+0 Installed StaticArrays ──────────────── v1.9.15 Installed AbstractFFTs ──────────────── v1.5.0 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed SciMLPublic ───────────────── v1.0.0 Installed AxisAlgorithms ────────────── v1.1.0 Installed QOI ───────────────────────── v1.0.1 Installed ColorTypes ────────────────── v0.12.1 Installed Requires ──────────────────── v1.3.1 Installed Glib_jll ──────────────────── v2.86.0+0 Installed BaseDirs ──────────────────── v1.3.2 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed JSON ──────────────────────── v0.21.4 Installed Parsers ───────────────────── v2.8.3 Installed AutoHashEquals ────────────── v2.2.0 Installed Rmath ─────────────────────── v0.8.0 Installed FreeTypeAbstraction ───────── v0.10.8 Installed BioGenerics ───────────────── v0.1.5 Installed Distributions ─────────────── v0.25.122 Installed FilePaths ─────────────────── v0.8.3 Installed StatsFuns ─────────────────── v1.5.0 Installed Unitful ───────────────────── v1.25.0 Installed OpenEXR ───────────────────── v0.3.3 Installed GridLayoutBase ────────────── v0.11.2 Installed IRTools ───────────────────── v0.4.15 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed SignedDistanceFields ──────── v0.4.0 Installed JLLWrappers ───────────────── v1.7.1 Installed ZygoteRules ───────────────── v0.2.7 Installed XZ_jll ────────────────────── v5.8.1+0 Installed x265_jll ──────────────────── v4.1.0+0 Installed GeometryBasics ────────────── v0.5.10 Installed ExactPredicates ───────────── v2.2.9 Installed Pango_jll ─────────────────── v1.56.4+0 Installed StructTypes ───────────────── v1.11.0 Installed IterTools ─────────────────── v1.10.0 Installed Lazy ──────────────────────── v0.15.1 Installed Graphs ────────────────────── v1.13.1 Installed TiffImages ────────────────── v0.11.6 Installed Dictionaries ──────────────── v0.4.5 Installed ModernGL ──────────────────── v1.1.8 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed FilePathsBase ─────────────── v0.9.24 Installed MIToS ─────────────────────── v3.1.0 Installed JpegTurbo_jll ─────────────── v3.1.3+0 Installed Dbus_jll ──────────────────── v1.16.2+0 Installed PaddedViews ───────────────── v0.5.12 Installed Adapt ─────────────────────── v4.4.0 Installed BioStructures ─────────────── v4.7.0 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed Meshes ────────────────────── v0.53.30 Installed Libmount_jll ──────────────── v2.41.2+0 Installed TriplotBase ───────────────── v0.1.0 Installed ExceptionUnwrapping ───────── v0.1.11 Installed Sixel ─────────────────────── v0.1.5 Installed TranscodingStreams ────────── v0.11.3 Installed Compat ────────────────────── v4.18.1 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed PlotUtils ─────────────────── v1.4.3 Installed EarCut_jll ────────────────── v2.2.4+0 Installed TensorCore ────────────────── v0.1.1 Installed Statistics ────────────────── v1.11.1 Installed ImageBase ─────────────────── v0.1.7 Installed PrecompileTools ───────────── v1.3.3 Installed StatsAPI ──────────────────── v1.7.1 Installed StringEncodings ───────────── v0.3.7 Installed StructArrays ──────────────── v0.7.1 Installed OffsetArrays ──────────────── v1.17.0 Installed ProgressMeter ─────────────── v1.11.0 Installed MbedTLS ───────────────────── v1.1.9 Installed OpenSSL ───────────────────── v1.5.0 Installed WebP ──────────────────────── v0.1.3 Installed TableTraitsUtils ──────────── v1.0.2 Installed BioSymbols ────────────────── v5.2.0 Installed xkbcommon_jll ─────────────── v1.9.2+0 Installed Animations ────────────────── v0.4.2 Installed ChainRulesCore ────────────── v1.26.0 Installed TupleTools ────────────────── v1.6.0 Installed Ratios ────────────────────── v0.4.5 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed BioMakie ──────────────────── v0.4.4 Installed JSON3 ─────────────────────── v1.14.3 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed GLFW_jll ──────────────────── v3.4.0+2 Installed YAML ──────────────────────── v0.4.14 Installed LAME_jll ──────────────────── v3.100.3+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed Isoband ───────────────────── v0.1.1 Installed IfElse ────────────────────── v0.1.1 Installed libvorbis_jll ─────────────── v1.3.8+0 Installed Makie ─────────────────────── v0.22.10 Installed PtrArrays ─────────────────── v1.3.0 Installed XML2_jll ──────────────────── v2.14.4+0 Installed FastaIO ───────────────────── v1.1.0 Installed IntervalArithmetic ────────── v1.0.0 Installed IntervalSets ──────────────── v0.7.11 Installed FixedPointNumbers ─────────── v0.8.5 Installed Showoff ───────────────────── v1.0.3 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed SpecialFunctions ──────────── v2.6.1 Installed Rotations ─────────────────── v1.7.1 Installed FFTW ──────────────────────── v1.10.0 Installed LazyStack ─────────────────── v0.1.3 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed MbedTLS_jll ───────────────── v2.28.6+2 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed Xorg_libXrandr_jll ────────── v1.5.5+0 Installed IndirectArrays ────────────── v1.0.0 Installed Bessels ───────────────────── v0.2.8 Installed Automa ────────────────────── v1.1.0 Installed Strided ───────────────────── v2.3.2 Installed DelaunayTriangulation ─────── v1.6.4 Installing 71 artifacts Installed artifact CRlibm 169.5 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact FreeType2 1.5 MiB Installed artifact x265 1.4 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Bzip2 503.5 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Pango 1.1 MiB Installed artifact XZ 1.5 MiB Installed artifact libinchi 933.4 KiB Installed artifact MbedTLS 2.1 MiB Installed artifact Imath 182.8 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact libdecor 44.1 KiB Installed artifact EarCut 80.5 KiB Installed artifact FFTW 2.2 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact x264 2.1 MiB Installed artifact Rmath 121.9 KiB Installed artifact LERC 272.9 KiB Installed artifact Expat 274.7 KiB Installed artifact isoband 25.7 KiB Installed artifact coordgenlibs 303.6 KiB Installed artifact libpng 328.4 KiB Installed artifact LAME 292.5 KiB Installed artifact libsixel 177.3 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Opus 925.5 KiB Installed artifact Libmount 6.5 MiB Installed artifact Glib 7.7 MiB Installed artifact Giflib 154.6 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact OpenEXR 1.9 MiB Installed artifact LZO 208.9 KiB Installed artifact libass 427.8 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact libvorbis 271.0 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact FFMPEG 11.0 MiB Installed artifact oneTBB 435.6 KiB Installed artifact GLFW 180.1 KiB Installed artifact XML2 2.5 MiB Installed artifact Pixman 372.2 KiB Installed artifact Libtiff 2.3 MiB Installed artifact Libuuid 3.7 MiB Installed artifact Wayland 390.6 KiB Installed artifact libwebp 2.6 MiB Installed artifact Libffi 44.2 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact xkbcommon 263.7 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Dbus 489.8 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Ogg 250.3 KiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Cairo 2.2 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact libaom 6.4 MiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Installed artifact Xorg_libX11 13.9 MiB Updating `~/.julia/environments/v1.13/Project.toml` [7de43156] + BioMakie v0.4.4 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [15f4f7f2] + AutoHashEquals v2.2.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.3.2 [0e736298] + Bessels v0.2.8 [00701ae9] + BioAlignments v3.1.0 [47718e42] + BioGenerics v0.1.5 [7de43156] + BioMakie v0.4.4 [7e6ae17a] + BioSequences v3.5.0 [de9282ab] + BioStructures v4.7.0 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [159f3aea] + Cairo v1.1.1 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [7a955b69] + CircularArrays v1.4.0 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.1 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [03fe91ce] + Colorfy v1.1.2 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 ⌅ [b46f11dc] + CoordRefSystems v0.18.10 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [e7dc6d0d] + DataValues v0.4.13 [927a84f5] + DelaunayTriangulation v1.6.4 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.9 [460bff9d] + ExceptionUnwrapping v0.1.11 [411431e0] + Extents v0.1.6 [c2308a5c] + FASTX v2.1.7 [7a1cc6ca] + FFTW v1.10.0 [a0c94c4b] + FastaIO v1.1.0 [5789e2e9] + FileIO v1.17.0 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.2.1 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 [f7f18e0c] + GLFW v3.4.5 ⌅ [e9467ef8] + GLMakie v0.11.11 [46192b85] + GPUArraysCore v0.2.0 [92fee26a] + GZip v0.6.2 [5c1252a2] + GeometryBasics v0.5.10 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.13.1 [3955a311] + GridLayoutBase v0.11.2 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [47d2ed2b] + Hyperscript v0.0.5 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [4e3cecfd] + ImageShow v0.3.8 [313cdc1a] + Indexing v1.1.1 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 ⌅ [a98d9a8b] + Interpolations v0.15.1 [d1acc4aa] + IntervalArithmetic v1.0.0 [8197267c] + IntervalSets v0.7.11 [524e6230] + IntervalTrees v1.1.0 [3587e190] + 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nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 38.87s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4721.2 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 976.91s ################################################################################ # Testing # Testing BioMakie Status `/tmp/jl_7dUuyi/Project.toml` [7de43156] BioMakie v0.4.4 [de9282ab] BioStructures v4.7.0 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 ⌅ [e9467ef8] GLMakie v0.11.11 [a09fc81d] ImageCore v0.10.5 [51bafb47] MIToS v3.1.0 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_7dUuyi/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.20.0 [15f4f7f2] AutoHashEquals v2.2.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [0e736298] Bessels v0.2.8 [00701ae9] BioAlignments v3.1.0 [47718e42] BioGenerics v0.1.5 [7de43156] BioMakie v0.4.4 [7e6ae17a] BioSequences v3.5.0 [de9282ab] BioStructures v4.7.0 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [7a955b69] CircularArrays v1.4.0 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [03fe91ce] Colorfy v1.1.2 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 ⌅ [b46f11dc] CoordRefSystems v0.18.10 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [e7dc6d0d] DataValues v0.4.13 [927a84f5] DelaunayTriangulation v1.6.4 [8bb1440f] DelimitedFiles 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libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: Inconsistent dictionary sizes Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] NamedArray @ ~/.julia/packages/NamedArrays/f1tMK/src/namedarraytypes.jl:71 [inlined] [3] NamedArray @ ~/.julia/packages/NamedArrays/f1tMK/src/constructors.jl:43 [inlined] [4] macro expansion @ ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:249 [inlined] [5] MIToS.Information.ContingencyTable{Float64, 2, MIToS.MSA.UngappedAlphabet}(alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:235 [6] ContingencyTable @ ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:260 [inlined] [7] MIToS.Information.ContingencyTable(matrix::Matrix{Float64}, alphabet::MIToS.MSA.UngappedAlphabet) @ MIToS.Information ~/.julia/packages/MIToS/aToo3/src/Information/ContingencyTables.jl:266 [8] top-level scope @ ~/.julia/packages/MIToS/aToo3/src/Information/BLOSUM62.jl:35 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ ~/.julia/packages/MIToS/aToo3/src/Information/Information.jl:113 [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ ~/.julia/packages/MIToS/aToo3/src/MIToS.jl:7 [13] include(mod::Module, _path::String) @ Base ./Base.jl:309 [14] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2777 [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2536 [16] macro expansion @ ./loading.jl:2464 [inlined] [17] macro expansion @ ./lock.jl:376 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2428 [19] require @ ./loading.jl:2404 [inlined] [20] eval_import_path @ ./module.jl:36 [inlined] [21] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [22] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [23] top-level scope @ ~/.julia/packages/BioMakie/8NfoU/test/runtests.jl:7 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ none:6 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [28] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MIToS/aToo3/src/Information/BLOSUM62.jl:35 in expression starting at /home/pkgeval/.julia/packages/MIToS/aToo3/src/Information/Information.jl:1 in expression starting at /home/pkgeval/.julia/packages/MIToS/aToo3/src/MIToS.jl:1 in expression starting at /home/pkgeval/.julia/packages/BioMakie/8NfoU/test/runtests.jl:1 Testing failed after 40.29s ERROR: LoadError: Package BioMakie errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2673 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1123.32s: package tests unexpectedly errored