Package evaluation of Stheno on Julia 1.13.0-DEV.1244 (c841b5fe7d*) started at 2025-10-02T20:36:45.711 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.32s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.14.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.92s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 47.12s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_1jjLQn/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_1jjLQn/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.2 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.1 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.14.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.2.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.5 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.38 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.6 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#140` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 18m48.5s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1136s / 99.3% 29.0GiB / 99.5% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 715s 63.4% 715s 20.2GiB 70.0% 20.2GiB addition 1 383s 34.0% 383s 11.7GiB 40.4% 11.7GiB Standardised Tests (correlated sum) 1 207s 18.3% 207s 6.35GiB 22.0% 6.35GiB adj_ad 9 23.2s 2.1% 2.58s 1.00GiB 3.5% 114MiB adj_fd 9 8.41s 0.7% 934ms 310MiB 1.1% 34.5MiB Standardised Tests (independent sum) 1 131s 11.6% 131s 5.01GiB 17.4% 5.01GiB adj_ad 9 24.9s 2.2% 2.76s 1.23GiB 4.3% 140MiB adj_fd 9 10.2s 0.9% 1.14s 294MiB 1.0% 32.7MiB Correlated GPs 1 42.8s 3.8% 42.8s 272MiB 0.9% 272MiB Consistency Tests 1 17.7s 1.6% 17.7s 117MiB 0.4% 117MiB Verify mean / kernel numerically 1 2.85s 0.3% 2.85s 39.5MiB 0.1% 39.5MiB Consistency Tests 1 1.59s 0.1% 1.59s 12.3MiB 0.0% 12.3MiB product 1 155s 13.7% 155s 3.92GiB 13.6% 3.92GiB multiply by function 1 91.0s 8.1% 91.0s 2.09GiB 7.2% 2.09GiB Diff Tests 1 52.5s 4.7% 52.5s 1.58GiB 5.5% 1.58GiB adj_ad 9 20.7s 1.8% 2.30s 874MiB 3.0% 97.1MiB adj_fd 9 6.17s 0.5% 686ms 113MiB 0.4% 12.5MiB Consistency Tests 1 5.89s 0.5% 5.89s 101MiB 0.3% 101MiB multiply by constant 1 63.8s 5.7% 63.8s 1.83GiB 6.3% 1.83GiB Diff Tests 1 47.5s 4.2% 47.5s 1.78GiB 6.2% 1.78GiB adj_ad 9 15.1s 1.3% 1.68s 800MiB 2.7% 88.8MiB adj_fd 9 10.7s 0.9% 1.18s 288MiB 1.0% 31.9MiB Consistency Tests 1 3.93s 0.3% 3.93s 17.4MiB 0.1% 17.4MiB GP mul errors 1 12.9ms 0.0% 12.9ms 40.7KiB 0.0% 40.7KiB compose 1 84.0s 7.4% 84.0s 2.39GiB 8.3% 2.39GiB general 1 51.5s 4.6% 51.5s 1.56GiB 5.4% 1.56GiB Diff Tests 1 45.8s 4.1% 45.8s 1.51GiB 5.2% 1.51GiB adj_ad 9 14.5s 1.3% 1.61s 737MiB 2.5% 81.9MiB adj_fd 9 5.80s 0.5% 644ms 115MiB 0.4% 12.8MiB Consistency Tests 1 4.29s 0.4% 4.29s 34.1MiB 0.1% 34.1MiB Stretch 1 27.2s 2.4% 27.2s 748MiB 2.5% 748MiB scalar stretch 1 26.5s 2.3% 26.5s 735MiB 2.5% 735MiB scalar input 1 25.6s 2.3% 25.6s 732MiB 2.5% 732MiB adj_fd 9 9.42s 0.8% 1.05s 276MiB 0.9% 30.7MiB adj_ad 9 3.46s 0.3% 384ms 142MiB 0.5% 15.8MiB vector input 1 847ms 0.1% 847ms 3.22MiB 0.0% 3.22MiB Vector stretch 1 565ms 0.1% 565ms 9.77MiB 0.0% 9.77MiB Matrix stretch 1 115ms 0.0% 115ms 2.98MiB 0.0% 2.98MiB Shift 1 2.73s 0.2% 2.73s 39.3MiB 0.1% 39.3MiB Shift{Vector{Float64}} 1 1.61s 0.1% 1.61s 14.1MiB 0.0% 14.1MiB Shift{Float64} 1 1.12s 0.1% 1.12s 25.2MiB 0.1% 25.2MiB Select 1 1.40s 0.1% 1.40s 31.3MiB 0.1% 31.3MiB evaluation 1 583ms 0.1% 583ms 20.2MiB 0.1% 20.2MiB idx isa Vector 1 486ms 0.0% 486ms 7.68MiB 0.0% 7.68MiB idx isa Integer 1 332ms 0.0% 332ms 3.37MiB 0.0% 3.37MiB Periodic 1 1.16s 0.1% 1.16s 33.0MiB 0.1% 33.0MiB cross 1 30.6s 2.7% 30.6s 1.42GiB 4.9% 1.42GiB block arrays 1 16.3s 1.4% 16.3s 791MiB 2.7% 791MiB Stheno._collect ∘ _mortar 1 13.8s 1.2% 13.8s 682MiB 2.3% 682MiB BlockMatrix 1 7.34s 0.7% 7.34s 386MiB 1.3% 386MiB adj_fd 1 1.01s 0.1% 1.01s 131MiB 0.4% 131MiB adj_ad 1 46.9ms 0.0% 46.9ms 2.36MiB 0.0% 2.36MiB BlockVector 1 6.46s 0.6% 6.46s 296MiB 1.0% 296MiB adj_fd 1 795ms 0.1% 795ms 12.3MiB 0.0% 12.3MiB adj_ad 1 242ms 0.0% 242ms 15.8MiB 0.1% 15.8MiB fdm stuff 1 2.47s 0.2% 2.47s 109MiB 0.4% 109MiB Correctness tests 1 8.60s 0.8% 8.60s 431MiB 1.5% 431MiB Standardised Tests 1 5.74s 0.5% 5.74s 232MiB 0.8% 232MiB gp 1 198s 17.6% 198s 4.50GiB 15.6% 4.50GiB adj_ad 2 20.8s 1.8% 10.4s 834MiB 2.8% 417MiB sparse gp 1 18.5s 1.6% 18.5s 389MiB 1.3% 389MiB SparseFiniteGP inference 1 13.0s 1.2% 13.0s 265MiB 0.9% 265MiB SparseFiniteGP methods 1 5.05s 0.4% 5.05s 119MiB 0.4% 119MiB SparseFiniteGP Constructors 1 382ms 0.0% 382ms 4.12MiB 0.0% 4.12MiB gp 1 18.0s 1.6% 18.0s 363MiB 1.2% 363MiB GP 1 17.7s 1.6% 17.7s 360MiB 1.2% 360MiB independent GPs 1 325ms 0.0% 325ms 2.58MiB 0.0% 2.58MiB wrapped AbstractGP 1 12.1ms 0.0% 12.1ms 288KiB 0.0% 288KiB adj_fd 2 2.93s 0.3% 1.47s 42.0MiB 0.1% 21.0MiB derived_gp 1 198μs 0.0% 198μs 1.92KiB 0.0% 1.92KiB gaussian_process_probabilistic_programme 1 139s 12.3% 139s 2.23GiB 7.7% 2.23GiB Zygote 1 28.0s 2.5% 28.0s 0.97GiB 3.4% 0.97GiB nested gppp 1 14.5s 1.3% 14.5s 74.6MiB 0.3% 74.6MiB External Consistency 1 14.5s 1.3% 14.5s 92.2MiB 0.3% 92.2MiB split 1 668ms 0.1% 668ms 11.5MiB 0.0% 11.5MiB gppp macro 1 59.6ms 0.0% 59.6ms 570KiB 0.0% 570KiB doctests 1 70.2s 6.2% 70.2s 1.71GiB 5.9% 1.71GiB BlockData 1 5.09s 0.5% 5.09s 215MiB 0.7% 215MiB vcat(::GPPPInput...) 1 1.41s 0.1% 1.41s 78.7MiB 0.3% 78.7MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1280.83s PkgEval succeeded after 1369.61s