Package evaluation of PointNeighbors on Julia 1.13.0-DEV.1222 (39e1473f3b*) started at 2025-10-02T18:21:00.403 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.08s ################################################################################ # Installation # Installing PointNeighbors... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [1c4d5385] + PointNeighbors v0.6.3 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.4.0 [4fba245c] + ArrayInterface v7.20.0 [a9b6321e] + Atomix v1.1.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.7 [fb6a15b2] + CloseOpenIntervals v0.1.13 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [adafc99b] + CpuId v0.3.1 [46192b85] + GPUArraysCore v0.2.0 [615f187c] + IfElse v0.1.1 [63c18a36] + KernelAbstractions v0.9.38 [10f19ff3] + LayoutPointers v0.1.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [1c4d5385] + PointNeighbors v0.6.3 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [94e857df] + SIMDTypes v0.1.0 [431bcebd] + SciMLPublic v1.0.0 [aedffcd0] + Static v1.3.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [7792a7ef] + StrideArraysCore v0.5.8 [8290d209] + ThreadingUtilities v0.5.5 [013be700] + UnsafeAtomics v0.3.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Installation completed after 4.65s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 201.46s ################################################################################ # Testing # Testing PointNeighbors Status `/tmp/jl_VwdHtX/Project.toml` [6e4b80f9] BenchmarkTools v1.6.0 [91a5bcdd] Plots v1.41.1 [1c4d5385] PointNeighbors v0.6.3 ⌅ [66699cd8] TrixiParticles v0.3.2 [0a316866] TrixiTest v0.1.4 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_VwdHtX/Manifest.toml` [47edcb42] ADTypes v1.18.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.20.0 [a9b6321e] Atomix v1.1.2 [6e4b80f9] BenchmarkTools v1.6.0 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 [3cb15238] ChangePrecision v1.1.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 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Testing Running tests... WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in pushat!(PointNeighbors.DynamicVectorOfVectors{T, ARRAY2D, ARRAY1D, L} where L where ARRAY1D where ARRAY2D where T, Any, Any) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/vector_of_vectors.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#update_grid!#71"(Any, Any, typeof(PointNeighbors.update_grid!), Union{PointNeighbors.GridNeighborhoodSearch{var"#s6", PointNeighbors.SemiParallelUpdate, CL, ELTYPE, PB, UB} where UB where PB where ELTYPE where CL where var"#s6", PointNeighbors.GridNeighborhoodSearch{var"#s7", PointNeighbors.SerialIncrementalUpdate, CL, ELTYPE, PB, UB} where UB where PB where ELTYPE where CL where var"#s7"}, AbstractArray{T, 2} where T) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/nhs_grid.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in push_cell!(PointNeighbors.FullGridCellList{C, LI, MINC, MAXC} where MAXC where MINC where LI where C, Any, Any) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/cell_lists/full_grid.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#initialize_grid!#66"(Any, Any, typeof(PointNeighbors.initialize_grid!), PointNeighbors.GridNeighborhoodSearch{var"#s7", PointNeighbors.ParallelUpdate, CL, ELTYPE, PB, UB} where UB where PB where ELTYPE where CL where var"#s7", AbstractArray{T, 2} where T) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/nhs_grid.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#update_grid!#76"(Any, Any, typeof(PointNeighbors.update_grid!), PointNeighbors.GridNeighborhoodSearch{var"#s109", PointNeighbors.ParallelIncrementalUpdate, CL, ELTYPE, PB, UB} where UB where PB where ELTYPE where CL where var"#s109", AbstractArray{T, 2} where T) at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/src/nhs_grid.jl Precompiling packages... 2437.9 ms ✓ BenchmarkTools 1 dependency successfully precompiled in 3 seconds. 16 already precompiled. Precompiling packages... 126590.0 ms ✓ DataFrames 4753.6 ms ✓ RecursiveArrayTools 2472.2 ms ✓ KernelAbstractions → EnzymeExt 1410.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt 2308.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 2618.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsKernelAbstractionsExt 1705.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 47733.2 ms ✓ SciMLBase 3750.7 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 13751.7 ms ✓ DiffEqBase 3814.9 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 10681.2 ms ✓ DiffEqCallbacks 196056.6 ms ✓ TrixiParticles 13 dependencies successfully precompiled in 423 seconds. 173 already precompiled. Precompiling packages... 5980.9 ms ✓ Accessors → TestExt 1 dependency successfully precompiled in 6 seconds. 21 already precompiled. WARNING: Method definition point_cloud(Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.point_cloud), Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition perturb!(Any, Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:22 overwritten on the same line (check for duplicate calls to `include`). Precompiling packages... 4869.0 ms ✓ StatsBase 9203.8 ms ✓ ColorSchemes 17698.9 ms ✓ PlotUtils 8487.0 ms ✓ PlotThemes 8719.0 ms ✓ RecipesPipeline 105470.3 ms ✓ Plots 6 dependencies successfully precompiled in 156 seconds. 169 already precompiled. Precompiling packages... 3253.8 ms ✓ KernelAbstractions → SparseArraysExt 1 dependency successfully precompiled in 4 seconds. 38 already precompiled. Precompiling packages... 1993.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1 dependency successfully precompiled in 2 seconds. 36 already precompiled. Precompiling packages... 1629.0 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1 dependency successfully precompiled in 2 seconds. 23 already precompiled. Precompiling packages... 3933.9 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 1 dependency successfully precompiled in 4 seconds. 92 already precompiled. Precompiling packages... 1627.4 ms ✓ ColorVectorSpace → SpecialFunctionsExt 1 dependency successfully precompiled in 2 seconds. 19 already precompiled. Precompiling packages... 20471.4 ms ✓ Plots → FileIOExt 1 dependency successfully precompiled in 22 seconds. 177 already precompiled. WARNING: Method definition point_cloud(Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.point_cloud), Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition perturb!(Any, Any) in module Main at /home/pkgeval/.julia/packages/PointNeighbors/jcoWH/test/point_cloud.jl:22 overwritten on the same line (check for duplicate calls to `include`). TrivialNeighborhoodSearch with 50 = 50 particles finished in 5.584 μs GridNeighborhoodSearch with 50 = 50 particles finished in 4.030 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 1.127 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 76.880 μs GridNeighborhoodSearch with 200 = 200 particles finished in 16.399 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 4.386 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 8.630 μs GridNeighborhoodSearch with 50 = 50 particles finished in 6.740 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 4.251 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 114.729 μs GridNeighborhoodSearch with 200 = 200 particles finished in 28.260 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 17.300 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 20.650 μs GridNeighborhoodSearch with 50 = 50 particles finished in 17.920 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 15.240 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 183.738 μs GridNeighborhoodSearch with 200 = 200 particles finished in 73.310 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 65.009 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 22.000 μs GridNeighborhoodSearch with 50 = 50 particles finished in 17.590 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 14.440 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 159.299 μs GridNeighborhoodSearch with 200 = 200 particles finished in 71.830 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 39.520 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 16.860 μs GridNeighborhoodSearch with 50 = 50 particles finished in 15.740 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 11.849 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 156.199 μs GridNeighborhoodSearch with 200 = 200 particles finished in 64.799 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 49.250 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 3.710 ns GridNeighborhoodSearch with 50 = 50 particles finished in 3.312 μs PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 11.083 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 3.680 ns GridNeighborhoodSearch with 200 = 200 particles finished in 12.260 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 47.819 μs TrivialNeighborhoodSearch with 50 = 50 particles finished in 1.589 ns GridNeighborhoodSearch with 50 = 50 particles finished in 693.950 ns PrecomputedNeighborhoodSearch with 50 = 50 particles finished in 8.705 μs TrivialNeighborhoodSearch with 200 = 200 particles finished in 1.630 ns GridNeighborhoodSearch with 200 = 200 particles finished in 2.697 μs PrecomputedNeighborhoodSearch with 200 = 200 particles finished in 34.825 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 31.759 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 27.840 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 9.400 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 546.755 μs GridNeighborhoodSearch with 20x20 = 400 particles finished in 256.298 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 46.590 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 92.809 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 86.409 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 53.990 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.096 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 430.436 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 182.858 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 195.438 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 181.839 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 168.398 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.172 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 756.052 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 559.975 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 200.588 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 141.418 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 116.239 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.200 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 760.183 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 559.415 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 153.758 μs GridNeighborhoodSearch with 10x10 = 100 particles finished in 220.118 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 160.778 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.236 ms GridNeighborhoodSearch with 20x20 = 400 particles finished in 922.921 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 630.174 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 3.209 ns GridNeighborhoodSearch with 10x10 = 100 particles finished in 4.581 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 52.439 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 3.239 ns GridNeighborhoodSearch with 20x20 = 400 particles finished in 18.370 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 364.727 μs TrivialNeighborhoodSearch with 10x10 = 100 particles finished in 1.815 ns GridNeighborhoodSearch with 10x10 = 100 particles finished in 1.454 μs PrecomputedNeighborhoodSearch with 10x10 = 100 particles finished in 51.065 μs TrivialNeighborhoodSearch with 20x20 = 400 particles finished in 1.900 ns GridNeighborhoodSearch with 20x20 = 400 particles finished in 6.055 μs PrecomputedNeighborhoodSearch with 20x20 = 400 particles finished in 455.740 μs TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 92.890 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 176.838 μs PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 35.920 μs TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 1.544 ms GridNeighborhoodSearch with 8x8x8 = 512 particles finished in 1.662 ms PrecomputedNeighborhoodSearch with 8x8x8 = 512 particles finished in 181.828 μs TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 280.607 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 375.566 μs PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 139.119 μs TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 2.901 ms GridNeighborhoodSearch with 8x8x8 = 512 particles finished in 2.835 ms PrecomputedNeighborhoodSearch with 8x8x8 = 512 particles finished in 1.226 ms TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 592.354 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 521.174 μs PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 541.735 μs TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 5.326 ms GridNeighborhoodSearch with 8x8x8 = 512 particles finished in 4.736 ms PrecomputedNeighborhoodSearch with 8x8x8 = 512 particles finished in 2.309 ms TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 585.134 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 493.655 μs PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 471.855 μs TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 5.055 ms GridNeighborhoodSearch with 8x8x8 = 512 particles finished in 4.806 ms PrecomputedNeighborhoodSearch with 8x8x8 = 512 particles finished in 3.247 ms TrivialNeighborhoodSearch with 5x5x5 = 125 particles finished in 951.061 μs GridNeighborhoodSearch with 5x5x5 = 125 particles finished in 912.911 μs PrecomputedNeighborhoodSearch with 5x5x5 = 125 particles finished in 747.472 μs ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1217 wait_forever at ./task.jl:1139 jfptr_wait_forever_62786.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007cf93f9ded10 Total snapshots: 392. Utilization: 0% ╎392 @Base/task.jl:1139 wait_forever() 391╎ 392 @Base/task.jl:1217 wait() TrivialNeighborhoodSearch with 8x8x8 = 512 particles finished in 7.071 ms GridNeighborhoodSearch with 8x8x8 = 512 particles finished in 6.755 ms [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1217 wait_forever at ./task.jl:1139 jfptr_wait_forever_62786.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2271 [inlined] start_task at /source/src/task.c:1281 unknown function (ip: (nil)) at (unknown file) Allocations: 25474072 (Pool: 25473376; Big: 696); GC: 22 PkgEval terminated after 2757.34s: test duration exceeded the time limit