Package evaluation of MendelImpute on Julia 1.13.0-DEV.1244 (c841b5fe7d*) started at 2025-10-03T09:33:04.378 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 11.08s ################################################################################ # Installation # Installing MendelImpute... Resolving package versions... Installed libaom_jll ─────────────────────── v3.12.1+0 Installed Libuuid_jll ────────────────────── v2.41.2+0 Installed HarfBuzz_jll ───────────────────── v8.5.1+0 Installed libass_jll ─────────────────────── v0.17.4+0 Installed CommonWorldInvalidations ───────── v1.0.0 Installed Glob ───────────────────────────── v1.3.1 Installed Qt6Base_jll ────────────────────── v6.8.2+1 Installed MultivariateStats ──────────────── v0.10.3 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed Libtiff_jll ────────────────────── v4.7.2+0 Installed MKL_jll ────────────────────────── v2025.2.0+0 Installed InlineStrings ──────────────────── v1.4.5 Installed Cairo_jll ──────────────────────── v1.18.5+0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed PlotThemes ─────────────────────── v3.3.0 Installed NearestNeighbors ───────────────── v0.4.22 Installed Graphite2_jll ──────────────────── v1.3.15+0 Installed OrderedCollections ─────────────── v1.8.1 Installed CpuId ──────────────────────────── v0.3.1 Installed HypothesisTests ────────────────── v0.11.5 Installed libinput_jll ───────────────────── v1.28.1+0 Installed Xorg_libXinerama_jll ───────────── v1.1.6+0 Installed SentinelArrays ─────────────────── v1.4.8 Installed Fontconfig_jll ─────────────────── v2.17.1+0 Installed FileIO ─────────────────────────── v1.17.0 Installed Distances ──────────────────────── v0.10.12 Installed fzf_jll ────────────────────────── v0.61.1+0 Installed BSON ───────────────────────────── v0.3.9 Installed StaticArrayInterface ───────────── v1.8.0 Installed NaNMath ────────────────────────── v1.1.3 Installed QuadGK ─────────────────────────── v2.11.2 Installed GroupSlices ────────────────────── v0.0.3 Installed Widgets ────────────────────────── v0.6.7 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed Opus_jll ───────────────────────── v1.5.2+0 Installed Tables ─────────────────────────── v1.12.1 Installed Arpack ─────────────────────────── v0.5.4 Installed Xorg_libxcb_jll ────────────────── v1.17.1+0 Installed Ogg_jll ────────────────────────── v1.3.6+0 Installed Reexport ───────────────────────── v1.2.2 Installed InverseFunctions ───────────────── v0.1.17 Installed LZO_jll ────────────────────────── v2.10.3+0 Installed Preferences ────────────────────── v1.5.0 Installed Unzip ──────────────────────────── v0.2.0 Installed WoodburyMatrices ───────────────── v1.0.0 Installed DBInterface ────────────────────── v2.6.1 Installed Static ─────────────────────────── v1.3.0 Installed Xorg_xcb_util_wm_jll ───────────── v0.4.2+0 Installed FFMPEG ─────────────────────────── v0.4.4 Installed Missings ───────────────────────── v1.2.0 Installed LERC_jll ───────────────────────── v4.0.1+0 Installed TableTraits ────────────────────── v1.0.1 Installed LLVMOpenMP_jll ─────────────────── v18.1.8+0 Installed LaTeXStrings ───────────────────── v1.4.0 Installed Crayons ────────────────────────── v4.1.1 Installed Xorg_libICE_jll ────────────────── v1.1.2+0 Installed Grisu ──────────────────────────── v1.0.2 Installed SortingAlgorithms ──────────────── v1.2.2 Installed Format ─────────────────────────── v1.3.7 Installed UnPack ─────────────────────────── v1.0.2 Installed EpollShim_jll ──────────────────── v0.0.20230411+1 Installed MacroTools ─────────────────────── v0.5.16 Installed URIs ───────────────────────────── v1.6.1 Installed eudev_jll ──────────────────────── v3.2.14+0 Installed DataStructures ─────────────────── v0.19.1 Installed ManualMemory ───────────────────── v0.1.8 Installed CodecZstd ──────────────────────── v0.8.6 Installed FillArrays ─────────────────────── v1.14.0 Installed DelimitedFiles ─────────────────── v1.9.1 Installed oneTBB_jll ─────────────────────── v2022.0.0+0 Installed VectorizationBase ──────────────── v0.21.72 Installed UnicodeFun ─────────────────────── v0.4.1 Installed x264_jll ───────────────────────── v10164.0.1+0 Installed Xorg_xcb_util_jll ──────────────── v0.4.1+0 Installed Observables ────────────────────── v0.5.5 Installed VCFTools ───────────────────────── v0.2.10 Installed StatsBase ──────────────────────── v0.34.6 Installed Xorg_libXau_jll ────────────────── v1.0.13+0 Installed CodecZlib ──────────────────────── v0.7.8 Installed Xorg_libXfixes_jll ─────────────── v6.0.2+0 Installed HostCPUFeatures ────────────────── v0.1.17 Installed ArrayInterface ─────────────────── v7.20.0 Installed IntelOpenMP_jll ────────────────── v2025.2.0+0 Installed DataValueInterfaces ────────────── v1.0.0 Installed Memento ────────────────────────── v1.4.1 Installed mtdev_jll ──────────────────────── v1.1.7+0 Installed Qt6ShaderTools_jll ─────────────── v6.8.2+1 Installed Libffi_jll ─────────────────────── v3.4.7+0 Installed LayoutPointers ─────────────────── v0.1.17 Installed LoggingExtras ──────────────────── v1.1.0 Installed Pixman_jll ─────────────────────── v0.44.2+0 Installed Expat_jll ──────────────────────── v2.7.1+0 Installed IrrationalConstants ────────────── v0.2.4 Installed Clustering ─────────────────────── v0.15.8 Installed libpng_jll ─────────────────────── v1.6.50+0 Installed libdecor_jll ───────────────────── v0.2.2+0 Installed Xorg_libXcursor_jll ────────────── v1.2.4+0 Installed Contour ────────────────────────── v0.6.3 Installed JLSO ───────────────────────────── v2.7.0 Installed HTTP ───────────────────────────── v1.10.17 Installed ColorVectorSpace ───────────────── v0.11.0 Installed StableRNGs ─────────────────────── v1.0.3 Installed ArrayLayouts ───────────────────── v1.11.2 Installed Xorg_xcb_util_keysyms_jll ──────── v0.4.1+0 Installed Roots ──────────────────────────── v2.2.10 Installed Interpolations ─────────────────── v0.16.2 Installed BitFlags ───────────────────────── v0.1.9 Installed libfdk_aac_jll ─────────────────── v2.0.4+0 Installed BufferedStreams ────────────────── v1.2.2 Installed Scratch ────────────────────────── v1.3.0 Installed SimpleBufferStream ─────────────── v1.2.0 Installed PooledArrays ───────────────────── v1.4.3 Installed PDMats ─────────────────────────── v0.11.35 Installed FFMPEG_jll ─────────────────────── v7.1.1+0 Installed WorkerUtilities ────────────────── v1.6.1 Installed TableOperations ────────────────── v1.2.0 Installed CodecXz ────────────────────────── v0.7.4 Installed DocStringExtensions ────────────── v0.9.5 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed Qt6Declarative_jll ─────────────── v6.8.2+1 Installed CompositionsBase ───────────────── v0.1.2 Installed CommonSolve ────────────────────── v0.2.4 Installed Ghostscript_jll ────────────────── v9.55.1+0 Installed RelocatableFolders ─────────────── v1.0.1 Installed KernelDensity ──────────────────── v0.6.10 Installed SLEEFPirates ───────────────────── v0.6.43 Installed SQLite ─────────────────────────── v1.6.1 Installed AliasTables ────────────────────── v1.1.3 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed ConcurrentUtilities ────────────── v2.5.0 Installed Plots ──────────────────────────── v1.41.1 Installed JLFzf ──────────────────────────── v0.1.11 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed SIMD ───────────────────────────── v3.7.1 Installed Combinatorics ──────────────────── v1.0.3 Installed RecipesBase ────────────────────── v1.3.4 Installed ColorSchemes ───────────────────── v3.31.0 Installed InvertedIndices ────────────────── v1.3.1 Installed DataAPI ────────────────────────── v1.16.0 Installed Xorg_libXi_jll ─────────────────── v1.8.3+0 Installed Measures ───────────────────────── v0.3.2 Installed libevdev_jll ───────────────────── v1.13.4+0 Installed Wayland_jll ────────────────────── v1.24.0+0 Installed Colors ─────────────────────────── v0.13.1 Installed StaticArrays ───────────────────── v1.9.15 Installed StaticArraysCore ───────────────── v1.4.3 Installed Libglvnd_jll ───────────────────── v1.7.1+1 Installed AbstractFFTs ───────────────────── v1.5.0 Installed Xorg_libxkbfile_jll ────────────── v1.1.3+0 Installed AxisAlgorithms ─────────────────── v1.1.0 Installed Latexify ───────────────────────── v0.16.10 Installed ColorTypes ─────────────────────── v0.12.1 Installed StringManipulation ─────────────── v0.4.1 Installed Glib_jll ───────────────────────── v2.86.0+0 Installed SciMLPublic ────────────────────── v1.0.0 Installed Requires ───────────────────────── v1.3.1 Installed Xorg_xkbcomp_jll ───────────────── v1.4.7+0 Installed LogExpFunctions ────────────────── v0.3.29 Installed Vulkan_Loader_jll ──────────────── v1.3.243+0 Installed JSON ───────────────────────────── v0.21.4 Installed Xorg_xcb_util_cursor_jll ───────── v0.1.6+0 Installed PrettyTables ───────────────────── v3.0.11 Installed Parsers ────────────────────────── v2.8.3 Installed Arpack_jll ─────────────────────── v3.5.1+1 Installed Rmath ──────────────────────────── v0.8.0 Installed Distributions ──────────────────── v0.25.120 Installed StatsPlots ─────────────────────── v0.15.8 Installed BioGenerics ────────────────────── v0.1.5 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed Xorg_libXdmcp_jll ──────────────── v1.1.6+0 Installed StatsFuns ──────────────────────── v1.5.0 Installed Xorg_xcb_util_renderutil_jll ───── v0.3.10+0 Installed Xorg_xkeyboard_config_jll ──────── v2.44.0+0 Installed WeakRefStrings ─────────────────── v1.4.2 Installed XZ_jll ─────────────────────────── v5.8.1+0 Installed JLLWrappers ────────────────────── v1.7.1 Installed Xorg_libSM_jll ─────────────────── v1.2.6+0 Installed x265_jll ───────────────────────── v4.1.0+0 Installed Pango_jll ──────────────────────── v1.56.4+0 Installed ThreadingUtilities ─────────────── v0.5.5 Installed BGZFStreams ────────────────────── v0.3.2 Installed DataFrames ─────────────────────── v1.8.0 Installed Xorg_xtrans_jll ────────────────── v1.6.0+0 Installed RecipesPipeline ────────────────── v0.6.12 Installed Accessors ──────────────────────── v0.1.42 Installed VariantCallFormat ──────────────── v0.5.7 Installed JpegTurbo_jll ──────────────────── v3.1.3+0 Installed GR_jll ─────────────────────────── v0.73.17+0 Installed Adapt ──────────────────────────── v4.4.0 Installed FilePathsBase ──────────────────── v0.9.24 Installed JLD2 ───────────────────────────── v0.4.54 Installed Libmount_jll ───────────────────── v2.41.2+0 Installed ConstructionBase ───────────────── v1.6.0 Installed HypergeometricFunctions ────────── v0.3.28 Installed ExceptionUnwrapping ────────────── v0.1.11 Installed Dbus_jll ───────────────────────── v1.16.2+0 Installed Xorg_libX11_jll ────────────────── v1.8.12+0 Installed Compat ─────────────────────────── v4.18.1 Installed PlotUtils ──────────────────────── v1.4.3 Installed TensorCore ─────────────────────── v0.1.1 Installed StatsAPI ───────────────────────── v1.7.1 Installed Statistics ─────────────────────── v1.11.1 Installed TranscodingStreams ─────────────── v0.9.13 Installed LazyArrays ─────────────────────── v1.10.0 Installed LoopVectorization ──────────────── v0.12.172 Installed PrecompileTools ────────────────── v1.3.3 Installed OffsetArrays ───────────────────── v1.17.0 Installed ProgressMeter ──────────────────── v1.11.0 Installed OpenSSL ────────────────────────── v1.5.0 Installed MbedTLS ────────────────────────── v1.1.9 Installed Xorg_xcb_util_image_jll ────────── v0.4.1+0 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed GettextRuntime_jll ─────────────── v0.22.4+0 Installed xkbcommon_jll ──────────────────── v1.9.2+0 Installed Ratios ─────────────────────────── v0.4.5 Installed CPUSummary ─────────────────────── v0.2.7 Installed FriBidi_jll ────────────────────── v1.0.17+0 Installed ChainRulesCore ─────────────────── v1.26.0 Installed MatrixFactorizations ───────────── v2.2.0 Installed Xorg_libXrender_jll ────────────── v0.9.12+0 Installed LAME_jll ───────────────────────── v3.100.3+0 Installed IfElse ─────────────────────────── v0.1.1 Installed CSV ────────────────────────────── v0.10.15 Installed GLFW_jll ───────────────────────── v3.4.0+2 Installed libvorbis_jll ──────────────────── v1.3.8+0 Installed PtrArrays ──────────────────────── v1.3.0 Installed Showoff ────────────────────────── v1.0.3 Installed FixedPointNumbers ──────────────── v0.8.5 Installed SpecialFunctions ───────────────── v2.5.1 Installed FreeType2_jll ──────────────────── v2.13.4+0 Installed FFTW_jll ───────────────────────── v3.3.11+0 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed FFTW ───────────────────────────── v1.10.0 Installed SQLite_jll ─────────────────────── v3.48.0+0 Installed Xorg_libXext_jll ───────────────── v1.3.7+0 Installed MbedTLS_jll ────────────────────── v2.28.6+2 Installed Automa ─────────────────────────── v1.1.0 Installed PolyesterWeave ─────────────────── v0.2.2 Installed Xorg_libXrandr_jll ─────────────── v1.5.5+0 Installed Qt6Wayland_jll ─────────────────── v6.8.2+1 Installed SnpArrays ──────────────────────── v0.3.22 Installed GR ─────────────────────────────── v0.73.17 Installed BGEN ───────────────────────────── v0.1.17 Installed MendelImpute ───────────────────── v1.2.6 Installing 81 artifacts Installed artifact LZO 208.9 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact oneTBB 435.6 KiB Installed artifact xkbcommon 263.7 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact libinput 1.0 MiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Opus 925.5 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Vulkan_Loader 177.3 KiB Installed artifact Dbus 489.8 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact LERC 272.9 KiB Installed artifact libvorbis 271.0 KiB Installed artifact MbedTLS 2.1 MiB Installed artifact Ogg 250.3 KiB Installed artifact SQLite 5.0 MiB Installed artifact Rmath 121.9 KiB Installed artifact Xorg_xcb_util_cursor 27.6 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Xorg_libICE 384.9 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Libffi 44.2 KiB Installed artifact Ghostscript 31.4 MiB Installed artifact Qt6ShaderTools 2.1 MiB Installed artifact libpng 328.4 KiB Installed artifact XZ 1.5 MiB Installed artifact Wayland 390.6 KiB Installed artifact Xorg_xcb_util 39.5 KiB Installed artifact libaom 6.4 MiB Installed artifact Libuuid 3.7 MiB Installed artifact Xorg_xcb_util_wm 147.9 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Xorg_libSM 164.1 KiB Installed artifact Qt6Base 20.6 MiB Installed artifact Glib 7.7 MiB Installed artifact Expat 274.7 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact GLFW 180.1 KiB Installed artifact mtdev 79.6 KiB Installed artifact x264 2.1 MiB Installed artifact Cairo 2.2 MiB Installed artifact Qt6Wayland 2.2 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact fzf 3.3 MiB Installed artifact Pango 1.1 MiB Installed artifact Xorg_xcb_util_image 54.3 KiB Installed artifact Libmount 6.5 MiB Installed artifact LAME 292.5 KiB Installed artifact Pixman 372.2 KiB Installed artifact Xorg_xcb_util_renderutil 32.1 KiB Installed artifact FFTW 2.2 MiB Installed artifact eudev 3.9 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact libass 427.8 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Arpack 147.2 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Libtiff 2.3 MiB Installed artifact libdecor 44.1 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact FFMPEG 11.4 MiB Installed artifact libevdev 117.1 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Xorg_xcb_util_keysyms 17.8 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact x265 1.4 MiB Installed artifact GR 16.2 MiB Installed artifact Qt6Declarative 21.6 MiB Updating `~/.julia/environments/v1.13/Project.toml` [e47305d1] + MendelImpute v1.2.6 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.20.0 [4c555306] + ArrayLayouts v1.11.2 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 ⌅ [6db4b851] + BGEN v0.1.17 [28d598bf] + BGZFStreams v0.3.2 [fbb218c0] + BSON v0.3.9 [47718e42] + BioGenerics v0.1.5 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a10d1c49] + DBInterface v2.6.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.0 [864edb3b] + DataStructures v0.19.1 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [c87230d0] + FFMPEG v0.4.4 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [28b8d3ca] + GR v0.73.17 [c27321d9] + Glob v1.3.1 [42e2da0e] + Grisu v1.0.2 [d853e229] + GroupSlices v0.0.3 [cd3eb016] + HTTP v1.10.17 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.5 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [a98d9a8b] + Interpolations v0.16.2 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.1 [9da8a3cd] + JLSO v2.7.0 [682c06a0] + JSON v0.21.4 [5ab0869b] + KernelDensity v0.6.10 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 ⌅ [5078a376] + LazyArrays v1.10.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [bdcacae8] + LoopVectorization v0.12.172 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 ⌅ [a3b82374] + MatrixFactorizations v2.2.0 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.2 [f28f55f0] + Memento v1.4.1 [e47305d1] + MendelImpute v1.2.6 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.3 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.5.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.3 [91a5bcdd] + Plots v1.41.1 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.0.11 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.10 [fdea26ae] + SIMD v3.7.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [0aa819cd] + SQLite v1.6.1 [431bcebd] + SciMLPublic v1.0.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [992d4aef] + Showoff v1.0.3 [777ac1f9] + SimpleBufferStream v1.2.0 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [860ef19b] + StableRNGs v1.0.3 [aedffcd0] + Static v1.3.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [4c63d2b9] + StatsFuns v1.5.0 [f3b207a7] + StatsPlots v0.15.8 [892a3eda] + StringManipulation v0.4.1 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[458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 37.93s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6529.3 ms ✓ TestEnv 1 dependency successfully precompiled in 7 seconds. 27 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 3 direct dependencies failed to precompile: MendelImpute Failed to precompile MendelImpute [e47305d1-6a61-5370-bc5d-77554d143183] to "/home/pkgeval/.julia/compiled/v1.13/MendelImpute/jl_owsx3h" (ProcessExited(1)). ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3072 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [7] include_string @ ./loading.jl:2928 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [9] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.13/SnpArrays/jl_OfFC4a" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, loadable_exts::Nothing) @ Base ./loading.jl:3357 [3] kwcall(::@NamedTuple{loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3237 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2698 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3928 [11] maybe_cachefile_lock @ ./loading.jl:3925 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2673 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2511 [14] macro expansion @ ./loading.jl:2439 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2403 [17] require @ ./loading.jl:2379 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/MendelImpute/z2M6N/src/MendelImpute.jl:5 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [27] include_string @ ./loading.jl:2928 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [29] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MendelImpute/z2M6N/src/MendelImpute.jl:1 in expression starting at stdin:5 JLD2 Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.13/JLD2/jl_YQTSiY" (ProcessExited(1)). Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_lKb00p"). Fatal error: ERROR: LoadError: MethodError: no method matching stacktrace(::Vector{Base.StackTraces.StackFrame}) The function `stacktrace` exists, but no method is defined for this combination of argument types. Closest candidates are: stacktrace(!Matched::Bool) @ Base stacktraces.jl:206 stacktrace() @ Base stacktraces.jl:206 stacktrace(!Matched::Vector{<:Union{Ptr{Nothing}, Base.InterpreterIP}}, !Matched::Bool) @ Base stacktraces.jl:193 ... Stacktrace: [1] CapturedException(ex::ConcurrencyViolationError, bt_raw::Vector{Base.StackTraces.StackFrame}) @ Base ./task.jl:17 [2] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [3] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [4] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [6] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [7] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [8] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [9] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [10] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:907 [11] mktemp(fn::Function) @ Base.Filesystem ./file.jl:905 [12] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [13] macro expansion @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined] [14] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [15] macro expansion @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined] [16] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] IncludeInto @ ./Base.jl:311 [inlined] [19] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [20] include(mod::Module, _path::String) @ Base ./Base.jl:309 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [22] top-level scope @ stdin:5 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [25] include_string @ ./loading.jl:2928 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [27] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.13/SnpArrays/jl_HSoNt9" (ProcessExited(1)). ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [7] include_string @ ./loading.jl:2928 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [9] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1253.97s ################################################################################ # Testing # Testing MendelImpute Status `/tmp/jl_yOV7Yb/Project.toml` ⌅ [6db4b851] BGEN v0.1.17 [6e4b80f9] BenchmarkTools v1.6.0 [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.0 [b4f34e82] Distances v0.10.12 [5789e2e9] FileIO v1.17.0 [53c48c17] FixedPointNumbers v0.8.5 [d853e229] GroupSlices v0.0.3 ⌅ [033835bb] JLD2 v0.4.54 [9da8a3cd] JLSO v2.7.0 ⌅ [5078a376] LazyArrays v1.10.0 [e47305d1] MendelImpute v1.2.6 [92933f4c] ProgressMeter v1.11.0 [4e780e97] SnpArrays v0.3.22 [276daf66] SpecialFunctions v2.5.1 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.6 [f3b207a7] StatsPlots v0.15.8 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.7 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_yOV7Yb/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack 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OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: The following 3 direct dependencies failed to precompile: MendelImpute Failed to precompile MendelImpute [e47305d1-6a61-5370-bc5d-77554d143183] to "/home/pkgeval/.julia/compiled/v1.13/MendelImpute/jl_qgdfpy" (ProcessExited(1)). ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3072 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [7] include_string @ ./loading.jl:2928 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [9] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.13/SnpArrays/jl_kJVljE" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, loadable_exts::Nothing) @ Base ./loading.jl:3357 [3] kwcall(::@NamedTuple{loadable_exts::Nothing}, ::typeof(Base.compilecache), pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool) @ Base ./loading.jl:3237 [4] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2698 [5] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [6] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [7] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [8] #invokelatest_gr#234 @ ./reflection.jl:1335 [inlined] [9] invokelatest_gr @ ./reflection.jl:1327 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3928 [11] maybe_cachefile_lock @ ./loading.jl:3925 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2673 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2511 [14] macro expansion @ ./loading.jl:2439 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2403 [17] require @ ./loading.jl:2379 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/MendelImpute/z2M6N/src/MendelImpute.jl:5 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [27] include_string @ ./loading.jl:2928 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [29] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MendelImpute/z2M6N/src/MendelImpute.jl:1 in expression starting at stdin:5 JLD2 Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.13/JLD2/jl_MwrO0w" (ProcessExited(1)). Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_xEBEsz"). Fatal error: ERROR: LoadError: MethodError: no method matching stacktrace(::Vector{Base.StackTraces.StackFrame}) The function `stacktrace` exists, but no method is defined for this combination of argument types. Closest candidates are: stacktrace(!Matched::Bool) @ Base stacktraces.jl:206 stacktrace() @ Base stacktraces.jl:206 stacktrace(!Matched::Vector{<:Union{Ptr{Nothing}, Base.InterpreterIP}}, !Matched::Bool) @ Base stacktraces.jl:193 ... Stacktrace: [1] CapturedException(ex::ConcurrencyViolationError, bt_raw::Vector{Base.StackTraces.StackFrame}) @ Base ./task.jl:17 [2] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [3] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [4] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [6] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [7] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [8] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [9] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [10] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:907 [11] mktemp(fn::Function) @ Base.Filesystem ./file.jl:905 [12] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [13] macro expansion @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined] [14] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [15] macro expansion @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined] [16] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] IncludeInto @ ./Base.jl:311 [inlined] [19] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [20] include(mod::Module, _path::String) @ Base ./Base.jl:309 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [22] top-level scope @ stdin:5 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [25] include_string @ ./loading.jl:2928 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [27] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.13/SnpArrays/jl_I4g2fZ" (ProcessExited(1)). ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3072 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2918 [7] include_string @ ./loading.jl:2928 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:342 [9] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 in expression starting at /home/pkgeval/.julia/packages/MendelImpute/z2M6N/test/runtests.jl:1 Testing failed after 133.35s ERROR: LoadError: Package MendelImpute errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2673 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1606.11s: package fails to precompile