Package evaluation of GraphDynamicalSystems on Julia 1.13.0-DEV.1244 (c841b5fe7d*) started at 2025-10-03T02:44:45.473 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.92s ################################################################################ # Installation # Installing GraphDynamicalSystems... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [13529e2e] + GraphDynamicalSystems v0.0.3 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.20.0 [15f4f7f2] + AutoHashEquals v2.2.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.7 [0b6fb165] + ChunkCodecCore v1.0.0 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [2b5f629d] + DiffEqBase v6.190.2 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [6e36e845] + DynamicalSystemsBase v3.15.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.14 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.14.0 [f6369f11] + ForwardDiff v1.2.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [13529e2e] + GraphDynamicalSystems v0.0.3 [86223c79] + Graphs v1.13.1 [076d061b] + HashArrayMappedTries v0.2.0 [1fa96474] + HerbConstraints v0.4.6 [2b23ba43] + HerbCore v0.3.12 [4ef9e186] + HerbGrammar v0.6.2 [5bbddadd] + HerbInterpret v0.2.1 [3008d8e8] + HerbSearch v0.4.7 [6d54aada] + HerbSpecification v0.2.1 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.2 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [fa8bd995] + MetaGraphsNext v0.7.4 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [645ca80c] + Neighborhood v0.2.4 [bac558e1] + OrderedCollections v1.8.1 [bbf590c4] + OrdinaryDiffEqCore v1.34.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.5.0 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.37.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [f2b01f46] + Roots v2.2.10 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.120.0 [c0aeaf25] + SciMLOperators v1.7.2 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.5.1 [40b095a5] + StateSpaceSets v2.5.2 [aedffcd0] + Static v1.3.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.6 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.45 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [781d530d] + TruncatedStacktraces v1.4.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.46.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.36s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 410.93s ################################################################################ # Testing # Testing GraphDynamicalSystems Status `/tmp/jl_5BDIfd/Project.toml` [4c88cf16] Aqua v0.8.14 [f3fd9213] Attractors v1.29.0 [6e36e845] DynamicalSystemsBase v3.15.0 [13529e2e] GraphDynamicalSystems v0.0.3 [86223c79] Graphs v1.13.1 [2b23ba43] HerbCore v0.3.12 [c3a54625] JET v0.10.7 [fa8bd995] MetaGraphsNext v0.7.4 [817f1d60] ReTestItems v1.34.0 ⌃ [b002da8f] SoleLogics v0.4.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_5BDIfd/Manifest.toml` [47edcb42] ADTypes v1.18.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.20.0 [f3fd9213] Attractors v1.29.0 [15f4f7f2] AutoHashEquals v2.2.0 [0e736298] Bessels v0.2.8 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 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v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [6e36e845] DynamicalSystemsBase v3.15.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.14 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7a1cc6ca] FFTW v1.10.0 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.1.3 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.14.0 [6a86dc24] FiniteDiff v2.28.1 [f6369f11] ForwardDiff v1.2.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [13529e2e] GraphDynamicalSystems v0.0.3 [86223c79] Graphs v1.13.1 [076d061b] HashArrayMappedTries v0.2.0 [1fa96474] HerbConstraints v0.4.6 [2b23ba43] HerbCore v0.3.12 [4ef9e186] HerbGrammar v0.6.2 [5bbddadd] HerbInterpret v0.2.1 [3008d8e8] HerbSearch v0.4.7 [6d54aada] HerbSpecification v0.2.1 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 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v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.9.9 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.46.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.67.1+0 [3f19e933] p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Scanning for test items in project `GraphDynamicalSystems` at paths: /home/pkgeval/.julia/packages/GraphDynamicalSystems/kQHIZ [ Info: Finished scanning for test items in 6.7 seconds. [ Info: Scheduling 9 tests on pid 131 ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{Bool}, ::Bool) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] _runtests_in_current_env(ti_filter::Function, paths::Tuple{String}, projectfile::String, cfg::ReTestItems._Config) @ ReTestItems ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:510 [2] (::ReTestItems.var"#_runtests##0#_runtests##1"{ReTestItems.TestItemFilter{Returns{Bool}, Nothing, Nothing}, Tuple{String}, ReTestItems._Config, String})() @ ReTestItems ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:381 [3] with_logstate(f::ReTestItems.var"#_runtests##0#_runtests##1"{ReTestItems.TestItemFilter{Returns{Bool}, Nothing, Nothing}, Tuple{String}, ReTestItems._Config, String}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:540 [4] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:651 [5] _runtests(ti_filter::Function, paths::Tuple{String}, cfg::ReTestItems._Config) @ ReTestItems ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:377 [6] runtests(shouldrun::Returns{Bool}, paths::String; nworkers::Int64, nworker_threads::String, worker_init_expr::Expr, testitem_timeout::Float64, retries::Int64, memory_threshold::Float64, debug::Int64, name::Nothing, tags::Nothing, report::Bool, logs::Symbol, verbose_results::Bool, test_end_expr::Expr, validate_paths::Bool, timeout_profile_wait::Int64, gc_between_testitems::Bool, failfast::Bool, testitem_failfast::Bool, failures_first::Bool) @ ReTestItems ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:347 [7] runtests(shouldrun::Function, paths::String) @ ReTestItems ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:298 [8] #runtests#36 @ ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:276 [inlined] [9] runtests @ ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:273 [inlined] [10] runtests(pkg::Module) @ ReTestItems ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:272 [11] top-level scope @ ~/.julia/packages/GraphDynamicalSystems/kQHIZ/test/runtests.jl:3 [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [16] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/GraphDynamicalSystems/kQHIZ/test/runtests.jl:3 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{Bool}, ::Bool) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] _runtests_in_current_env(ti_filter::Function, paths::Tuple{String}, projectfile::String, cfg::ReTestItems._Config) @ ReTestItems ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:434 [2] (::ReTestItems.var"#_runtests##0#_runtests##1"{ReTestItems.TestItemFilter{Returns{Bool}, Nothing, Nothing}, Tuple{String}, ReTestItems._Config, String})() @ ReTestItems ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:381 [3] with_logstate(f::ReTestItems.var"#_runtests##0#_runtests##1"{ReTestItems.TestItemFilter{Returns{Bool}, Nothing, Nothing}, Tuple{String}, ReTestItems._Config, String}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:540 [4] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:651 [5] _runtests(ti_filter::Function, paths::Tuple{String}, cfg::ReTestItems._Config) @ ReTestItems ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:377 [6] runtests(shouldrun::Returns{Bool}, paths::String; nworkers::Int64, nworker_threads::String, worker_init_expr::Expr, testitem_timeout::Float64, retries::Int64, memory_threshold::Float64, debug::Int64, name::Nothing, tags::Nothing, report::Bool, logs::Symbol, verbose_results::Bool, test_end_expr::Expr, validate_paths::Bool, timeout_profile_wait::Int64, gc_between_testitems::Bool, failfast::Bool, testitem_failfast::Bool, failures_first::Bool) @ ReTestItems ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:347 [7] runtests(shouldrun::Function, paths::String) @ ReTestItems ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:298 [8] #runtests#36 @ ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:276 [inlined] [9] runtests @ ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:273 [inlined] [10] runtests(pkg::Module) @ ReTestItems ~/.julia/packages/ReTestItems/0nAwp/src/ReTestItems.jl:272 [11] top-level scope @ ~/.julia/packages/GraphDynamicalSystems/kQHIZ/test/runtests.jl:3 [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [16] _start() @ Base ./client.jl:577 Testing failed after 90.66s ERROR: LoadError: Package GraphDynamicalSystems errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2673 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2522 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:538 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:515 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:168 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:157 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [9] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:156 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:155 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 552.6s: package tests unexpectedly errored